LOCUS       NM_001409408            1645 bp    mRNA    linear   PLN 01-JAN-2023
DEFINITION  Oryza sativa Japonica Group S-adenosylmethionine synthase 3-like
            (LOC4325163), mRNA.
ACCESSION   NM_001409408 XM_015758863
VERSION     NM_001409408.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1645)
  AUTHORS   Li W, Han Y, Tao F and Chong K.
  TITLE     Knockdown of SAMS genes encoding S-adenosyl-l-methionine
            synthetases causes methylation alterations of DNAs and histones and
            leads to late flowering in rice
  JOURNAL   J Plant Physiol 168 (15), 1837-1843 (2011)
   PUBMED   21757254
  REMARK    GeneRIF: RNA interference (RNAi) transgenic rice with downregulated
            transcripts of OsSAMS1, 2 and 3 showed pleiotropic phenotypes,
            including dwarfism, reduced fertility, delayed germination, as well
            as late flowering[SAMs1,2,3]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK241882.1 and CI410906.1.
            
            On Jul 18, 2022 this sequence version replaced XM_015758863.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK241882.1, CI639395.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMN02298007
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1402              AK241882.1         2-1403
            1403-1645           CI410906.1         193-435
FEATURES             Location/Qualifiers
     source          1..1645
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="1"
                     /map="1"
     gene            1..1645
                     /gene="LOC4325163"
                     /gene_synonym="METK3; OsJ_001358"
                     /note="S-adenosylmethionine synthase 3-like"
                     /db_xref="GeneID:4325163"
     exon            1..119
                     /gene="LOC4325163"
                     /gene_synonym="METK3; OsJ_001358"
                     /inference="alignment:Splign:2.1.0"
     exon            120..1645
                     /gene="LOC4325163"
                     /gene_synonym="METK3; OsJ_001358"
                     /inference="alignment:Splign:2.1.0"
     CDS             130..1320
                     /gene="LOC4325163"
                     /gene_synonym="METK3; OsJ_001358"
                     /EC_number="2.5.1.6"
                     /note="P0706B05.41; putative S-adenosyl-L-methionine
                     synthetase; AdoMet synthase 3; LOC_Os01g18860; MAT 3;
                     Methionine adenosyltransferase 3"
                     /codon_start=1
                     /product="S-adenosylmethionine synthase 3"
                     /protein_id="NP_001396337.1"
                     /db_xref="GeneID:4325163"
                     /translation="

MAEVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGACAWLRPDGKTQVTVEYQNDNGAMVPLRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILRIVTENFDFRPGMIIINLDLMRGGNGRYLKTAAYGHFGREDPDFTWEVVKPLKWEEPSA"

     misc_feature    142..1296
                     /gene="LOC4325163"
                     /gene_synonym="METK3; OsJ_001358"
                     /note="S-adenosylmethionine synthase; Region: PLN02243"
                     /db_xref="CDD:177886"
     misc_feature    order(151..159,163..165,265..267,271..273,277..279,
                     292..294,298..306,502..513,517..519,643..645,649..651,
                     655..657,706..708,712..714,829..831,838..840,871..879,
                     883..894,901..903,916..939,943..945,955..957,1051..1053,
                     1057..1071,1084..1089,1093..1095)
                     /gene="LOC4325163"
                     /gene_synonym="METK3; OsJ_001358"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:350837"
     misc_feature    order(163..165,181..189,259..261,304..306,433..435,
                     442..447,499..504,637..639,643..645,718..720,841..843,
                     847..852,856..858,874..876,892..897,937..945,955..957,
                     967..969,973..975,1066..1068)
                     /gene="LOC4325163"
                     /gene_synonym="METK3; OsJ_001358"
                     /note="active site"
                     /db_xref="CDD:350837"
     misc_feature    order(163..165,181..186,637..639,643..645,895..897)
                     /gene="LOC4325163"
                     /gene_synonym="METK3; OsJ_001358"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:350837"
ORIGIN      

gcggcgaacaaaccgggccggatctctcctcactcctccgccacctcaaagctctccgttcaaaccgtcccgcgccgccgcggccgctgcaacccgcgcgcgcggactcctgcctctcggtcgaaggagatggctgaggttgacaccttcctcttcacttccgagtccgtcaatgagggacaccctgacaagctctgcgaccagatatccgatgcggtgcttgatgcgtgccttgctgaagaccctgaaagcaaggttgcctgtgagacctgcaccaagaccaacatggtcatggtgtttggtgagatcactaccaaggccaatgttgactatgagaagatcgtcagggatacttgccgcggcatcggctttgtgtccaatgatgtaggccttgatgctgaacactgtaaggtgcttgtcaacattgagcagcaatcccctgacatcgcacagggtgtccatgggcacttcaccaagcgcccagaggagattggtgccggtgaccaggggcatatgtttggatatgcaaccgatgagacccctgaattgatgccactcagccatgttcttgctaccaagctcggtgcccgtctcaccgaggtccgcaagaacggggcatgcgcatggctgaggcctgatgggaagacgcaagtgacagtggagtaccagaacgacaatggcgccatggtccctctccgcgtccacaccgtgctcatctccacccagcacgatgagaccgtgaccaacgacgaaatcgcggctgacctgaaggagcatgtcatcaagcctgtcatcccagagcagtaccttgatgagaagaccatcttccatctcaacccgtcaggtcgcttcgtcatcggtggacctcatggagatgcaggtctcaccgggcgcaagatcatcatcgacacctacggtggctggggagcacacggtggtggcgcgttctccggcaaggacccgaccaaggttgaccggagcggagcctacattgcaaggcaggcggccaagagcatcgttgccaatggcctcgctcgccgctgcattgtccaggtgtcgtatgccattggcgtgccggaaccgctctcggtgttcgtcgacacttacggcacgggcaagatccctgacagggagatcctcaggattgtcacggagaacttcgatttcaggccaggcatgatcatcatcaacctcgacctgatgaggggtggcaatggccgctacctgaagacggcggcttacgggcacttcgggagggaggaccctgacttcacctgggaggtggtgaaacccctcaagtgggaggagccttctgcataaacaaacacttgcagcctctaaaactgttttggaaatgtttccattgattttggagatgtttttatctacacttcagcctctgaacttaatcagaccgtcactacatgtatctattttcactgccttagtagcaggcaggtatgtttaaggtcttatgctgcttagtgttcttgtgttaaagaagcttgtgtggtgagtggtggaggggatgatgaaactataaagaaactgaagcctctcattggtccttgtcttgtgcgcagtgcacttctgtccaaatctggtgtcttgcttgatctctgaataattaagcaagctctcttgc

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