LOCUS       NM_001422370             886 bp    mRNA    linear   PLN 24-NOV-2023
DEFINITION  Oryza sativa Japonica Group serotonin N-acetyltransferase 2,
            chloroplastic-like (LOC4344423), mRNA; nuclear gene for chloroplast
            product.
ACCESSION   NM_001422370 XM_015793212
VERSION     NM_001422370.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 886)
  AUTHORS   Hwang OJ and Back K.
  TITLE     Simultaneous Suppression of Two Distinct Serotonin
            N-Acetyltransferase Isogenes by RNA Interference Leads to Severe
            Decreases in Melatonin and Accelerated Seed Deterioration in Rice
  JOURNAL   Biomolecules 10 (1), 141 (2020)
   PUBMED   31952365
  REMARK    GeneRIF: Simultaneous Suppression of Two Distinct Serotonin
            N-Acetyltransferase Isogenes by RNA Interference Leads to Severe
            Decreases in Melatonin and Accelerated Seed Deterioration in Rice.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 886)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI298090.1 and AK068156.1.
            
            On Jun 9, 2023 this sequence version replaced XM_015793212.2.
            
            ##Evidence-Data-START##
            Transcript is intronless :: AK068156.1, CF326118.1 [ECO:0000345]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-360               CI298090.1         1-360
            361-886             AK068156.1         359-884
FEATURES             Location/Qualifiers
     source          1..886
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="8"
                     /map="8"
     gene            1..886
                     /gene="LOC4344423"
                     /gene_synonym="OsJ_25726; OsSNAT2; P0015C07.5; SNAT2"
                     /note="serotonin N-acetyltransferase 2,
                     chloroplastic-like"
                     /db_xref="GeneID:4344423"
     exon            1..886
                     /gene="LOC4344423"
                     /gene_synonym="OsJ_25726; OsSNAT2; P0015C07.5; SNAT2"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    22..24
                     /gene="LOC4344423"
                     /gene_synonym="OsJ_25726; OsSNAT2; P0015C07.5; SNAT2"
                     /note="upstream in-frame stop codon"
     CDS             31..633
                     /gene="LOC4344423"
                     /gene_synonym="OsJ_25726; OsSNAT2; P0015C07.5; SNAT2"
                     /EC_number="2.3.1.87"
                     /note="Os08g0102000; B1147B12.22; putative ORF174;
                     LOC_Os08g01170"
                     /codon_start=1
                     /product="serotonin N-acetyltransferase 2, chloroplastic"
                     /protein_id="NP_001409299.1"
                     /db_xref="GeneID:4344423"
                     /translation="

MQMQAARPRVGVRPRGGIRPFPLPTLSFNNNSNRSACACACAVSVSDSELAARGFAVRRSSTGLDVGALNEVFARVGFPRRQEERLRRALEHSEVVWLEDSASSSAGRPVAFARAAGDGVFNAVVWDVVVEPSCQGLGLGRAVMERLVADLRGKGVSNIALYAEPRVVGFYRLLGFAMDPDAIRGMAFYRSRQQIQNTSS"

     transit_peptide 31..153
                     /gene="LOC4344423"
                     /gene_synonym="OsJ_25726; OsSNAT2; P0015C07.5; SNAT2"
                     /note="Chloroplast. /evidence=ECO:0000255; propagated from
                     UniProtKB/Swiss-Prot (Q6Z1Y6.1)"
     mat_peptide     154..630
                     /gene="LOC4344423"
                     /gene_synonym="OsJ_25726; OsSNAT2; P0015C07.5; SNAT2"
                     /product="Serotonin N-acetyltransferase 2, chloroplastic.
                     /id=PRO_0000437953"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6Z1Y6.1)"
     misc_feature    262..558
                     /gene="LOC4344423"
                     /gene_synonym="OsJ_25726; OsSNAT2; P0015C07.5; SNAT2"
                     /note="Acetyltransferase (GNAT) family; Region:
                     Acetyltransf_1; pfam00583"
                     /db_xref="CDD:395465"
     misc_feature    order(412..420,448..453)
                     /gene="LOC4344423"
                     /gene_synonym="OsJ_25726; OsSNAT2; P0015C07.5; SNAT2"
                     /note="Coenzyme A binding pocket [chemical binding]; other
                     site"
                     /db_xref="CDD:173926"
ORIGIN      

attgtcatgcagatgcagaggtagaggcagatgcagatgcaggcggcgcggccccgcgttggtgtccgtcctcgcggtggcattcggccgtttccactgcccaccttgagcttcaacaacaactccaacaggagtgcgtgtgcgtgtgcgtgtgcggtgtcggtgtcggactctgagcttgcggcgcgcgggttcgcggtgcggcgcagctcgacggggctggacgtgggggcgctgaacgaggtgttcgcgcgggtggggttcccgcggcggcaggaggagcggctgcggcgagcgctggagcacagcgaggtggtgtggctggaggactcggcgtcgtcgtcggcggggcggccggtggcgttcgcgcgcgcggcgggggacggcgtgttcaacgcggtggtctgggacgtggtggtggagccgtcgtgccagggcctcggcctcggccgcgccgtcatggagcgcctcgtcgccgacctgcgaggcaagggcgtctccaacatcgcgctctacgccgagccccgcgtcgtgggattctaccgcctcctcggcttcgccatggaccccgacgccatcaggggcatggccttctaccgctcaaggcaacaaatacaaaacacctcctcctagctccttttctatcttcttcttctccgatcaatatatccaaaacacatattggattgcatattaatttgcatgtgtatgtatgtatattcaagctgattattattgtctagacacacacacacacatgcagagtgaaatcaactcatcaaatacatatgtagttgcagctgattgcaaccagtaatccattccattcatcacacttgctaattacacttcattcttgttttacctctctctctctctctctctt

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