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Previous release (v1)
2025-03-02 01:47:19, GGRNA : RefSeq release 228 (Jan, 2025)
Summary:
Results:
Matches are highlighted with green background.
Overlapping matches are dark colored.
gene="Cldn4" /note="upstream in-frame stop codon" CDS 192..824 /gene="Cldn4" /codon_start=1 /product="claudin-4" /protein_id="NP_001012022.1" /db_xref="GeneID:304407" /db_xref="RGD:1307932" /translation="MASMGLQVLGISLAVLGWLGVILSCSLPMWRVTAFIGSNIVTAQTSWEGLWMNCVVQSTGQMQCKMYDSMLALPQDLQAARALMVISIIVGALGMLLSVVGGKCTNCMEDETVKAKVMITAGAVFIVASMLIMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWAASGLLLLGGGLLCCNCPPRRNEKPYSAKYSAARSVPASNYV" misc_feature 201..701 /gene="Cldn4" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN // REFERENCE 1 (bases 1 to 1824) AUTHORS Jie,H...
CDS 196..819 /gene="Cldn11" /codon_start=1 /product="claudin-11" /protein_id="NP_445909.2" /db_xref="GeneID:84588" /db_xref="RGD:71081" /translation="MVATCLQVVGFVTSFVGWIGIIVTTSTNDWVVTCSYTIPTCRKMDELGSKGLWADCVMATGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGHEPGVAKYRRAQLAGVLLILLALCAIVATIWFPVCAHREITIVSFGYSLYAGWIGAVMCLVGGCVIVCCSGDAQSFGENRFYYSSGSSSPTHAKSAHV" misc_feature 199..261 /gene="Cldn11" /note="propagated from UniProtKB/Swiss-Prot (Q99P82.1); transmembrane region" misc_feature 211..711 /gene="Cldn11" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD...
note="claudin 24" /db_xref="GeneID:502083" /db_xref="RGD:1562043" CDS 1..663 /gene="Cldn24" /gene_synonym="RGD1562043" /note="claudin 22 like" /codon_start=1 /product="putative claudin-24" /protein_id="NP_001103614.1" /db_xref="GeneID:502083" /db_xref="RGD:1562043" /translation="MAFIFKTAMQSVALSLSLLGWVLAITTTYLPHWKNLNLELNEMENWTMGLWKSCVIQEEVGRQCKDFDSFLALPAELQISRILMSLSNGLGLLGLLASGCGLDCLRLGETRKGLKRRLLILGGTLLWTSGVMVLVPVSWVAHMTVQEFWDETVPEIVPRWEFGEALFLGWFAGLCLVLGGCVLHCAACWRPAPPASGHYAVAGLGDHSSYLENGTAQPKV" misc_feature 19..540 /gene="Cldn24" /gene_synonym="RGD1562043" /note="PMP-22/EMP/MP20/Claudin...
CDS 1..660 /gene="Cldn20" /codon_start=1 /product="claudin-20 precursor" /protein_id="NP_001102864.1" /db_xref="GeneID:680178" /db_xref="RGD:1595446" /translation="MASAGLQLLAFILAVSGVSGVLAATLLPNWKVNADAGSTIVTAIVQVHGLWMDCTWYSTGMFSCTLKYSILSLPVYVQAARATMVLACILSALGICTAIVGMKCTHLGGDAHTKSHISFAGGVCFITAGISALIPTVWYTKEIISNFLDLTVPESHKYEPGGAVYIGFISAMLLLIAGIIFCISYIKKNQEPWIYPPKQRLTSTWQPKNRLAYNLKDYV" sig_peptide 1..69 /gene="Cldn20" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 13..543 /gene="Cldn20" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD...
Cldn8" /note="claudin 8" /db_xref="GeneID:304124" /db_xref="RGD:1308575" exon 1..2250 /gene="Cldn8" /inference="alignment:Splign:2.1.0" CDS 3..680 /gene="Cldn8" /codon_start=1 /product="claudin-8" /protein_id="NP_001032863.1" /db_xref="GeneID:304124" /db_xref="RGD:1308575" /translation="MATYALQMAALVLGGVGMVGTVAVTIMPQWRVSAFIESNIVVFENRWEGLWMNCMRHANIRMQCKVYDSLLALSPDLQASRGLMCAASVLSFLAFMTAILGMKCTRCTGEDENVKSRILLTAGIIFFITGLVVLIPVSWVANAIIRDFYNPLVDVAQKRELGEALYIGWTTALVLIAGGALFCCVFCCTERSNSYKYSVPSHRTTQRSFHAEKRSPSIYSKSQYV" misc_feature 15..548 /gene="Cldn8" /note="PMP-22/EMP/MP20/Claudin family; Region:...
note="upstream in-frame stop codon" CDS 481..1200 /gene="Cldn14" /codon_start=1 /product="claudin-14" /protein_id="NP_001013447.1" /db_xref="GeneID:304073" /db_xref="RGD:1309165" /translation="MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTGIYQCQIYRSLLALPRDLQAARALMVISCLLSGMACACAVVGMKCTRCAKGTPAKTTFAVLGGALFLLAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTLLCLSCQDEGPYRPYQPQSRAGATTTATAPAYRPPAAYKDNRAPSVTSAAHSGYRLNDYV" misc_feature 547..1023 /gene="Cldn14" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN // REFERENCE 1...
Cldn17" /note="upstream in-frame stop codon" CDS 140..814 /gene="Cldn17" /codon_start=1 /product="claudin-17" /protein_id="NP_001100582.1" /db_xref="GeneID:304125" /db_xref="RGD:1307462" /translation="MAFYPVQIAGLVLGFFGLVGTVGTTLLPQWRVSAFIGSNIIIFERIWEGLWMNCIQQAMVTLQCKFYNSILALPPVLEAARALMCVAMALSLVALIIGICGMKQIECTSSSERVKAYLLGTSGVLFIVTGIFVLIPVSWTANIIIRDFYDPTIHAGQKRELGGALFLGWATAAVLFIAGGLLCGYCCCNRKEQWHGYPVSAYRVPPKDSQRKVTVPRKTSTSYV" misc_feature 155..685 /gene="Cldn17" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN // REFERENCE 1 (bases 1 to 1177)...
stop codon" CDS 103..990 /gene="Cldn23" /codon_start=1 /product="claudin-23" /protein_id="NP_001028234.1" /db_xref="GeneID:290789" /db_xref="RGD:1309001" /translation="MRTPVVMTLGMVLTPCGLLLNLVSTLAPGWRLLKGFRDQPVDVVLYQGLWDICREQSSRERECGQPDQWNYFGTQPVQVARGLMITSLATTALGLLLASLGVRCWQEEPHFGLAGLSGVVLFAAGLFSLIPVSWYNHFLADPDVLAAPAQPVTVQVSYSLVLGYLGSCLLLLGGFSLALSFAPWCEERCCRCRKAPPAGPRRSSISTVYVDWPEPALTPAIKYYSEGQHRPPPAQQRDTGKLKVGFPMPRPPPKAYTNPMDVLEGEEKKTASSQDGSSSRSTRPCQNSLPCDSDL" misc_feature 115..>513 /gene="Cldn23" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919"...
alignment:Splign:2.1.0" CDS 119..622 /gene="Cldnd2" /gene_synonym="RGD1566413" /codon_start=1 /product="claudin domain-containing protein 2" /protein_id="NP_001102613.1" /db_xref="GeneID:499140" /db_xref="RGD:1566413" /translation="MGVKKSLQTGGNLLNLLSSVLTVLSTTTSYWIRQQGGHSGLWQECTHGVCSNMPCQNTLAVTTACMVLAAAFSIVALGMGIRIQCQEAESLRSQNTIVLLFLSGLLLLIALTVYTAKNAWKPEVFFSWSYFFGWLALPFSFIAGFCFLLADMIMQSTEAISGFPVCL" misc_feature 185..550 /gene="Cldnd2" /gene_synonym="RGD1566413" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" exon 288..428 /gene="Cldnd2" /gene_synonym...
product="claudin-12" /protein_id="NP_001094283.1" /db_xref="GeneID:5" /db_xref="RGD:1561053" /translation="MGCRDVHAATVLSFLCGIASVAGLFAGTLLPNWRKLRLITFNRNEKNLTIYTGLWVKCARYDGSSDCLMYDRTWYLSVDQLDLRVLQFALPLSILIAMGALLLCLIGMCNTAFKSSVPNIKLAKCLVNSAGCHLVAGLLFFLAGTVSLSPSIWAIFYNSHLNKKFEPVFTFDYAVFVTIASSGGLFMTALLLFVWYCACKSLSSPFWQPLYSHPPGMHTYSQPYSSRSRLSAIEIDIPVVSHST" ORIGIN // REFERENCE 1 (bases 1 to 3480) AUTHORS Castro Dias M, Coisne C, Baden P, Enzmann G, Garrett L, Becker L, Holter SM, Hrabe de Angelis M, Deutsch U and Engelhardt B. CONSRTM German Mouse Clinic Consortium TITLE Claudin-12 is not required...
gene="Cldn19" /gene_synonym="claudin-19" /note="upstream in-frame stop codon" CDS 85..720 /gene="Cldn19" /gene_synonym="claudin-19" /codon_start=1 /product="claudin-19" /protein_id="NP_001008514.1" /db_xref="GeneID:298487" /db_xref="RGD:1305000" /translation="MANSGLQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCKLYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPTAKGRVAISGGALFLLAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWASAGLAILGGSFLCCTCPEPERANSIPQPYRSGPSTAAREYV" misc_feature 94..630 /gene="Cldn19" /gene_synonym="claudin-19" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin;...
xref="RGD:1305000" CDS 426..1100 /gene="Cldn19" /gene_synonym="claudin-19" /codon_start=1 /product="claudin-19 isoform X1" /protein_id="XP_006238818.1" /db_xref="GeneID:298487" /db_xref="RGD:1305000" /translation="MANSGLQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCKLYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPTAKGRVAISGGALFLLAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWASAGLAILGGSFLCCTCPEPERANSIPQPYRSGPSTAAREPVVKLSTSVKGPLGV" misc_feature 435..971 /gene="Cldn19" /gene_synonym="claudin-19" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919"...
Cldn22" /note="claudin 22" /db_xref="GeneID:306454" /db_xref="RGD:1305271" exon 1..1027 /gene="Cldn22" /inference="alignment:Splign:2.1.0" CDS 64..726 /gene="Cldn22" /codon_start=1 /product="claudin-22" /protein_id="NP_001103613.1" /db_xref="GeneID:306454" /db_xref="RGD:1305271" /translation="MGLVFRTATQSAALLLSLLGWVLSCLTNYLPHWKNLNLELNEMENWTMGLWKSCVIQEEVGRQCKDFDSFLALPAELQISRILMSLSNGLGLLGLLASGCGLDCLRLGETRKGLKRRLLILGGTLLWTSGVMVLVPVSWVAHMTVQEFWDETVPEIVPRWEFGEALFLGWFAGFCLVLGGCVLHCAACWRPAPPASGHYAVAGLGDHQQHLELKQANPEV" misc_feature <208..612 /gene="Cldn22" /note="PMP-22/EMP/MP20/Claudin family; Region...
stop codon" CDS 441..1100 /gene="Cldn3" /note="RVP1; ventral prostate.1 protein" /codon_start=1 /product="claudin-3" /protein_id="NP_113888.2" /db_xref="GeneID:65130" /db_xref="RGD:68425" /translation="MSMGLEITGTSLAVLGWLCTIVCCALPMWRVSAFIGSSIITAQITWEGLWMNCVVQSTGQMQCKMYDSLLALPQDLQAARALIVVSILLAAFGLLVALVGAQCTNCVQDETAKAKITIVAGVLFLLAAVLTLVPVSWSANTIIRDFYNPLVPEAQKREMGTGLYVGWAAAALQLLGGALLCCSCPPREKYAPTKILYSAPRSTGPGTGTGTAYDRKDYV" misc_feature 447..941 /gene="Cldn3" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" misc_feature 465..527 /gene="Cldn3" /note="...
gene="Cldn9" /note="upstream in-frame stop codon" CDS 364..1017 /gene="Cldn9" /codon_start=1 /product="claudin-9" /protein_id="NP_001011889.1" /db_xref="GeneID:287099" /db_xref="RGD:1308999" /translation="MASTGLELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVVALLLALLGLLVAITGAQCTTCVEDEGAKARIVLTAGVLLLLSGILVLIPVCWTAHAIIQDFYNPLVAEALKRELGASLYLGWAAAALLMLGGGLLCCTCPPSHFERPRGPRLGYSIPSRSGASGLDKRDYV" misc_feature 373..852 /gene="Cldn9" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN // REFERENCE 1 (bases 1 to 1432) AUTHORS...
gene="Cldn6" /inference="alignment:Splign:2.1.0" CDS 132..791 /gene="Cldn6" /codon_start=1 /product="claudin-6" /protein_id="NP_001095834.1" /db_xref="GeneID:287098" /db_xref="RGD:1308837" /translation="MASTGLQILGIVLTLLGWVNALVSCALPMWKVTAFIGNSIVVAQMVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVITLLIVLLGLLLYLAGAKCTTCVEDKNSKSRLVLISGVIFVISGVLTLIPICWTAHAIIQDFYNPLVADAQKRELGASLYLGWAASGLLLIGGGLLCCACSSGGTQGPSHYVARYSSPVPHSRGPSEYPSKNYV" misc_feature 141..641 /gene="Cldn6" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN // REFERENCE 1 (bases 1 to 1544) AUTHORS...
Cldn34b" /inference="alignment:Splign:2.1.0" CDS 260..886 /gene="Cldn34b" /note="claudin-34; rCG36429-like" /codon_start=1 /product="claudin 34B" /protein_id="NP_001395800.1" /db_xref="GeneID:680342" /db_xref="RGD:1592987" /translation="MLMKNCHHQMGGFALTTVAWLLCCISIGLPQWQVWHYEDPVILKPTVAFVGIWRTCIFHTDSNSSNNRLCHQYSYRDSFVPLYIRINQHLLLVSSFLGLFGKITTIIALSNVSMGRVRRNATCNPFSLSGILNIIASSFLYLAVLFNYIAIVRKWRVSFPPSFHMPSHPHTQKMGSAMALAIIAAVFFLLSGTICLSSNLGKSPHSKI" misc_feature 311..850 /gene="Cldn34b" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN // REFERENCE...
CDS 349..1041 /gene="Cldn2" /gene_synonym="RGD1560247" /codon_start=1 /product="claudin-2" /protein_id="NP_001100316.1" /db_xref="GeneID:300920" /db_xref="RGD:1560247" /translation="MASLGVQLVGYILGLLGLLGTSIAMLLPNWRTSSYVGASIVTAVGFSKGLWMECATHSTGITQCDIYSTLLGLPADIQAAQAMMVTSSAMSSLACIISVVGMRCTVFCQESRAKDRVAVVGGVFFILGGILGFIPVAWNLHGILRDFYSPLVPDSMKFEIGEALYLGIISALFSLVAGVILCFSCSPQGNRTNYYDGYQAQPLATRSSPRSAQQPKAKSEFNSYSLTGYV" misc_feature 361..891 /gene="Cldn2" /gene_synonym="RGD1560247" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN // REFERENCE 1...
gene="Cldn5" /note="claudin 5" /db_xref="GeneID:65131" /db_xref="RGD:68431" exon 1..1427 /gene="Cldn5" /inference="alignment:Splign:2.1.0" CDS 143..799 /gene="Cldn5" /codon_start=1 /product="claudin-5" /protein_id="NP_113889.1" /db_xref="GeneID:65131" /db_xref="RGD:68431" /translation="MGSAALEILGLVLCLVGWVGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYESVLALSAEVQAARALTVGAVLLALVALFVTLTGAQCTTCVAPGPVKARVALTGGALYALCGLLALVPLCWFANIVVREFYDPTVPVSQKYELGAALYIGWAASALLMCGGGLVCCGAWVCTGRPEFSFPVKYSAPRRTTANGDYDKKNYV" misc_feature 155..682 /gene="Cldn5" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_...
db_xref="GeneID:103691506" /db_xref="RGD:9242288" CDS 1..588 /gene="LOC103691506" /codon_start=1 /product="claudin-4-like" /protein_id="XP_008767408.1" /db_xref="GeneID:103691506" /db_xref="RGD:9242288" /translation="MASLGQQAVIEFSGSDIIRQSTIWKGLWKSCVAQEGHQTQCKAYDSLLGRPESWQKSRVLMVTCIITAGLGLLLCVVRSKCLKCVEEENTKAKIRMGAGALCLLAGLLVTVSVSWVTHDIMQGFSSRLIPSVQKGKMGAVLYIGWASSGLLLLGGPLLSCNCSPLTDRRHSVRYQAASSSIVCNSGLNPPNAATL" misc_feature <64..438 /gene="LOC103691506" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...
db_xref="GeneID:680190" /db_xref="RGD:1595434" CDS 183..809 /gene="Cldn34b3" /codon_start=1 /product="claudin-34-like" /protein_id="XP_001056075.1" /db_xref="GeneID:680190" /db_xref="RGD:1595434" /translation="MLMKNCHYQMGGFALTTVAWLLCCISIGLPQWQVWHYEDPVILKPTVAFVGIWRACIFHTDSNSSNNRLCHQYNYRDSFVPLYIRINQHLLLVSSFLGLFGKITTIIALSNVSMGRVRRNATCNPFSLSGILNIIASSFLYLAVLFNYIAIVRKWGVAFPPSFHMPSHPDIQKMGSAMALAIIAAVFFLLSGTICLSSNLGKSPHSKI" misc_feature 234..773 /gene="Cldn34b3" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" polyA_site 1036 /gene="Cldn34b3" /experiment="...
db_xref="GeneID:315953" /db_xref="RGD:1359696" CDS 109..705 /gene="Cldn18" /codon_start=1 /product="claudin-18 isoform X1" /protein_id="XP_038937476.1" /db_xref="GeneID:315953" /db_xref="RGD:1359696" /translation="MCASRGRFVIAMLQAVRALMIVGIVLGVIGILVSIFALKCIRIGSMDDSAKAKMTLTSGIMFIISGVCAIIGVSVFANMLVTNFWMSTANMYSGMGGMVQTVQTRYTFGAALFVGWIAGGLTLIGGVMMCIACRGLTPDDRNFKAVSYHASGQNVAYKPGGFKASTGFGSNARNKKIYDGGARTEDDEQSHPTKYDYV" misc_feature <145..492 /gene="Cldn18" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" polyA_site 2554 /gene="Cldn18" /experiment="COORDINATES...
xref="GeneID:100362173" /db_xref="RGD:2318711" CDS 206..841 /gene="Cldn34b4" /codon_start=1 /product="claudin-34-like" /protein_id="XP_006257019.1" /db_xref="GeneID:100362173" /db_xref="RGD:2318711" /translation="MLIKKRYNSQMGGFALTTLAWIICCISIGLPQWRVWHFQDPEVFKPTTAFVGMWRVCTFQHNDNFSNIRICHRYNYHDTFIPLDIRVTQQLLLVASFLGLVGKATTIISLWNVCGGRVRTNTTYNPFGLSGILNIIASSFLCLAVLFNYISIILQEGIVFPPSFNVPSQPDTQEIGSAMALAIIAAVFFLLSGTILLTSTFPREKPMHSKY" misc_feature 260..799 /gene="Cldn34b4" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" polyA_site 1047 /gene="Cldn34b4" /...
xref="GeneID:100362173" /db_xref="RGD:2318711" CDS 282..917 /gene="Cldn34b4" /codon_start=1 /product="claudin-34-like" /protein_id="XP_002730287.1" /db_xref="GeneID:100362173" /db_xref="RGD:2318711" /translation="MLIKKRYNSQMGGFALTTLAWIICCISIGLPQWRVWHFQDPEVFKPTTAFVGMWRVCTFQHNDNFSNIRICHRYNYHDTFIPLDIRVTQQLLLVASFLGLVGKATTIISLWNVCGGRVRTNTTYNPFGLSGILNIIASSFLCLAVLFNYISIILQEGIVFPPSFNVPSQPDTQEIGSAMALAIIAAVFFLLSGTILLTSTFPREKPMHSKY" misc_feature 336..875 /gene="Cldn34b4" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" polyA_site 1123 /gene="Cldn34b4" /...
db_xref="RGD:1309165" CDS 426..1145 /gene="Cldn14" /codon_start=1 /product="claudin-14 isoform X1" /protein_id="XP_006248120.1" /db_xref="GeneID:304073" /db_xref="RGD:1309165" /translation="MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTGIYQCQIYRSLLALPRDLQAARALMVISCLLSGMACACAVVGMKCTRCAKGTPAKTTFAVLGGALFLLAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTLLCLSCQDEGPYRPYQPQSRAGATTTATAPAYRPPAAYKDNRAPSVTSAAHSGYRLNDYV" misc_feature 492..968 /gene="Cldn14" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" polyA_site 1361 /gene="Cldn14" /...
db_xref="RGD:1309165" CDS 286..1005 /gene="Cldn14" /codon_start=1 /product="claudin-14 isoform X1" /protein_id="XP_006248121.1" /db_xref="GeneID:304073" /db_xref="RGD:1309165" /translation="MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTGIYQCQIYRSLLALPRDLQAARALMVISCLLSGMACACAVVGMKCTRCAKGTPAKTTFAVLGGALFLLAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTLLCLSCQDEGPYRPYQPQSRAGATTTATAPAYRPPAAYKDNRAPSVTSAAHSGYRLNDYV" misc_feature 352..828 /gene="Cldn14" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" polyA_site 1221 /gene="Cldn14" /...
db_xref="RGD:1309165" CDS 503..1222 /gene="Cldn14" /codon_start=1 /product="claudin-14 isoform X1" /protein_id="XP_038944338.1" /db_xref="GeneID:304073" /db_xref="RGD:1309165" /translation="MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTGIYQCQIYRSLLALPRDLQAARALMVISCLLSGMACACAVVGMKCTRCAKGTPAKTTFAVLGGALFLLAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTLLCLSCQDEGPYRPYQPQSRAGATTTATAPAYRPPAAYKDNRAPSVTSAAHSGYRLNDYV" misc_feature 569..1045 /gene="Cldn14" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" polyA_site 1438 /gene="Cldn14" /...
xref="GeneID:287098" /db_xref="RGD:1308837" CDS 1582..2241 /gene="Cldn6" /codon_start=1 /product="claudin-6 isoform X1" /protein_id="XP_008765733.1" /db_xref="GeneID:287098" /db_xref="RGD:1308837" /translation="MASTGLQILGIVLTLLGWVNALVSCALPMWKVTAFIGNSIVVAQMVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVITLLIVLLGLLLYLAGAKCTTCVEDKNSKSRLVLISGVIFVISGVLTLIPICWTAHAIIQDFYNPLVADAQKRELGASLYLGWAASGLLLIGGGLLCCACSSGGTQGPSHYVARYSSPVPHSRGPSEYPSKNYV" misc_feature 1591..2091 /gene="Cldn6" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" polyA_site 2996 /gene="Cldn6" /...
LOCUS NM_001109402 1008 bp mRNA linear ROD 24-JUN-2024 DEFINITION Rattus norvegicus claudin 34D (Cldn34d), mRNA. ACCESSION NM_001109402 XM_001056879 VERSION NM_001109402.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473966.2. On Oct 4, 2007 this sequence...
GeneID:304388" /db_xref="RGD:1310678" CDS 1591..2274 /gene="Cldn15" /codon_start=1 /product="claudin-15 isoform X1" /protein_id="XP_006249217.1" /db_xref="GeneID:304388" /db_xref="RGD:1310678" /translation="MSIAVETFGFFMSALGLLMLGVTLPNSYWRVSTVHGNVITTNTIFENLWYSCATDSLGVSNCWDFPSMLALSGYVQGCRALMITAILLGFLGLFLGMVGLRCTNVGNIDLSRKAKLLAIAGAFHILAGACGMVAISWYAVNITTDFFNPLYVGTKYELGSALYLGWSASLLSILGGICVFSTCCCDSKEDPATRVGLPYKPSTVVTARATSDESDVSFGKYGKNAYV" misc_feature 1600..2121 /gene="Cldn15" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" polyA_site 3402 /gene="Cldn15" /...
in-frame stop codon" CDS 400..1035 /gene="Cldn7" /gene_synonym="cld-7" /codon_start=1 /product="claudin-7" /protein_id="NP_113890.1" /db_xref="GeneID:65132" /db_xref="RGD:68432" /translation="MANSGLQLLGFSMAMLGWVGLIASTAIPQWQMSSYAGDNIITAQAMYKGLWMECVTQSTGMMSCKMYDSVLALPAATQATRALMIVSLVLGFLAMFVATMGMKCTRCGGDDKVKKARIAMTGGIIFIVAGLAALVACSWIGHQIVTDFYNPLTPMNIKYEFGPAIFIGWAGSALVLLGGALLSCSCPGSESKAAYRAPRSYPKSNSSKEYV" misc_feature 409..912 /gene="Cldn7" /gene_synonym="cld-7" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; pfam00822" /db_xref="CDD:395662" misc_feature 421..483 /gene="Cldn7" /gene_...
CDS 159..989 /gene="Cldnd1" /codon_start=1 /product="claudin domain-containing protein 1 isoform X2" /protein_id="XP_006248268.1" /db_xref="GeneID:288182" /db_xref="RGD:1359273" /translation="MGGDRLENKTSVSVASWSSLNARMDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYQSPAQENSSDANRIAWEDFMGDEADEKTYNDALFRYNGNLGLWRRCITIPKNTHWYAPPERTESFEVVTKCMSFTLNEQFMEKYVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACVCRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLGLPKNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA" misc_feature 276..929 /gene="Cldnd1" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919"...
CDS 494..1186 /gene="Cldn2" /gene_synonym="RGD1560247" /codon_start=1 /product="claudin-2 isoform X1" /protein_id="XP_006234324.1" /db_xref="GeneID:300920" /db_xref="RGD:1560247" /translation="MASLGVQLVGYILGLLGLLGTSIAMLLPNWRTSSYVGASIVTAVGFSKGLWMECATHSTGITQCDIYSTLLGLPADIQAAQAMMVTSSAMSSLACIISVVGMRCTVFCQESRAKDRVAVVGGVFFILGGILGFIPVAWNLHGILRDFYSPLVPDSMKFEIGEALYLGIISALFSLVAGVILCFSCSPQGNRTNYYDGYQAQPLATRSSPRSAQQPKAKSEFNSYSLTGYV" misc_feature 506..1036 /gene="Cldn2" /gene_synonym="RGD1560247" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" polyA_site 3180 /...
LOCUS NM_001398571 735 bp mRNA linear ROD 31-MAR-2024 DEFINITION Rattus norvegicus claudin 25 (Cldn25), mRNA. ACCESSION NM_001398571 XM_002729920 VERSION NM_001398571.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT INFERRED REFSEQ: This record is predicted by genome sequence analysis and is not yet supported by experimental evidence. The reference sequence was...
AUTHORS Linares,G.R., Brommage,R., Powell,D.R., Xing,W., Chen,S.T., Alshbool,F.Z., Lau,K.H., Wergedal,J.E. and Mohan,S. TITLE Claudin 18 is a novel negative regulator of bone resorption and osteoclast differentiation JOURNAL J Bone Miner Res 27 (7), 1553-1565 (2012) PUBMED 22437732 REFERENCE 2 (bases 1 to 1574) AUTHORS Krause,G., Winkler,L., Mueller,S.L., Haseloff,R.F., Piontek,J. and Blasig,I.E. TITLE Structure and function of claudins JOURNAL Biochim Biophys Acta 1778 (3), 631-645 (2008) PUBMED 18036336 REMARK Review article REFERENCE 3 (bases 1 to 1574) AUTHORS Fernandez,A....
gene="Cldn1" /note="claudin 1" /db_xref="GeneID:65129" /db_xref="RGD:68422" exon 1..402 /gene="Cldn1" /inference="alignment:Splign:2.1.0" CDS 180..815 /gene="Cldn1" /codon_start=1 /product="claudin-1" /protein_id="NP_113887.3" /db_xref="GeneID:65129" /db_xref="RGD:68422" /translation="MANAGLQLLGFILASLGWIGSIVSTALPQWKIYSYAGDNIVTAQAIYEGLWMSCVSQSTGQIQCKVFDSLLNLNSTLQATRALMVIGILLGLIAIFVSTIGMKCMRCLEDDEVQKMWMAVIGGIIFVISGLATLVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGALLSCSCPRKTTSYPTPRPYPKPTPSSGKDYV" misc_feature 192..725 /gene="Cldn1" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin;...
stop codon" CDS 250..1110 /gene="Cldn10" /codon_start=1 /product="claudin-10" /protein_id="NP_001099528.1" /db_xref="GeneID:290485" /db_xref="RGD:1308027" /translation="MSRAQISALVCGVGGFGALVAATTSNEWKVTTRASSVITATWVYQGLWMNCAAGSMASTALEIIAFVVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYFANLWKMCVTDSTGVANCKDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGVVFILSGLCSMTGCSLYANKITTEFFDPLFMEQKYELGAALFIGWAGASLCIIGGVIFCFSISDNNKTPRMGYTYNGPTSVMSSRTKYQGGEGDFKTTGPSKQFDKNAYV" misc_feature 424..951 /gene="Cldn10" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" exon...
LOCUS NM_001408916 858 bp mRNA linear ROD 31-MAR-2024 DEFINITION Rattus norvegicus claudin 34C4 (Cldn34c4), mRNA. ACCESSION NM_001408916 XM_006257208 VERSION NM_001408916.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ0121.1. On Jul...
LOCUS XM_063280263 1206 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus claudin 34A (Cldn34a), transcript variant X2, mRNA. ACCESSION XM_063280263 VERSION XM_063280263.1 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic...
LOCUS NM_001109366 3973 bp mRNA linear ROD 24-JUN-2024 DEFINITION Rattus norvegicus claudin 34A (Cldn34a), mRNA. ACCESSION NM_001109366 XM_001064790 XM_001068935 XM_039099990 VERSION NM_001109366.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
LOCUS XM_063268546 4221 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus claudin 6 (Cldn6), transcript variant X2, mRNA. ACCESSION XM_063268546 VERSION XM_063268546.1 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic...
Splign:2.1.0" CDS 211..972 /gene="Cldnd1" /codon_start=1 /product="claudin domain-containing protein 1" /protein_id="NP_001006956.2" /db_xref="GeneID:288182" /db_xref="RGD:1359273" /translation="MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYQSPAQENSSDANRIAWEDFMGDEADEKTYNDALFRYNGNLGLWRRCITIPKNTHWYAPPERTESFEVVTKCMSFTLNEQFMEKYVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACVCRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLGLPKNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA" misc_feature 259..912 /gene="Cldnd1" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" exon 503..613 /gene...
LOCUS XM_063280262 1104 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus claudin 34A (Cldn34a), transcript variant X1, mRNA. ACCESSION XM_063280262 VERSION XM_063280262.1 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic...
LOCUS XM_063274174 1965 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus claudin 10 (Cldn10), transcript variant X1, mRNA. ACCESSION XM_063274174 VERSION XM_063274174.1 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic...
LOCUS XM_039087376 800 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus claudin domain containing 2 (Cldnd2), transcript variant X1, mRNA. ACCESSION XM_039087376 VERSION XM_039087376.2 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived...
LOCUS XM_008773232 1258 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus claudin 34D (Cldn34d), transcript variant X1, mRNA. ACCESSION XM_008773232 VERSION XM_008773232.4 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic...
LOCUS XM_063279887 2972 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus claudin 2 (Cldn2), transcript variant X2, mRNA. ACCESSION XM_063279887 VERSION XM_063279887.1 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic...
LOCUS XM_039100424 889 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus claudin 34C4 (Cldn34c4), transcript variant X1, mRNA. ACCESSION XM_039100424 VERSION XM_039100424.2 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic...
LOCUS XM_063270411 2035 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus claudin domain containing 1 (Cldnd1), transcript variant X3, mRNA. ACCESSION XM_063270411 VERSION XM_063270411.1 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived...
gene="Cldn15" /codon_start=1 /product="claudin-15" /protein_id="NP_001100605.1" /db_xref="GeneID:304388" /db_xref="RGD:1310678" /translation="MSIAVETFGFFMSALGLLMLGVTLPNSYWRVSTVHGNVITTNTIFENLWYSCATDSLGVSNCWDFPSMLALSGYVQGCRALMITAILLGFLGLFLGMVGLRCTNVGNIDLSRKAKLLAIAGAFHILAGACGMVAISWYAVNITTDFFNPLYVGTKYELGSALYLGWSASLLSILGGICVFSTCCCDSKEDPATRVGLPYKPSTVVTARATSDESDVSFGKYGKNAYV" misc_feature 215..283 /gene="Cldn15" /note="propagated from UniProtKB/Swiss-Prot (D3ZQJ0.1); transmembrane region" misc_feature 221..742 /gene="Cldn15" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_...
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0.000 | 0.000 | search_start;
0.075 | 0.075 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:claudin)%7C(nt:claudin)%7C(aa:claudin))?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.145 | 0.070 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:claudin)%7C(nt:claudin)%7C(aa:claudin))?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.150 | 0.006 | cgi_end;
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