2024-04-19 11:49:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001006955 2145 bp mRNA linear ROD 22-MAR-2023 DEFINITION Rattus norvegicus claudin domain containing 1 (Cldnd1), mRNA. ACCESSION NM_001006955 XM_213635 VERSION NM_001006955.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 2145) AUTHORS Matsuoka H, Tamura A, Kinehara M, Shima A, Uda A, Tahara H and Michihara A. TITLE Levels of tight junction protein CLDND1 are regulated by microRNA-124 in the cerebellum of stroke-prone spontaneously hypertensive rats JOURNAL Biochem Biophys Res Commun 498 (4), 817-823 (2018) PUBMED 29530526 REMARK GeneRIF: When miR-124 is increased, CLDND1 mRNA translation is downregulated in the brain. REFERENCE 2 (bases 1 to 2145) AUTHORS Mineta K, Yamamoto Y, Yamazaki Y, Tanaka H, Tada Y, Saito K, Tamura A, Igarashi M, Endo T, Takeuchi K and Tsukita S. TITLE Predicted expansion of the claudin multigene family JOURNAL FEBS Lett 585 (4), 606-612 (2011) PUBMED 21276448 REFERENCE 3 (bases 1 to 2145) AUTHORS Teckchandani A, Toida N, Goodchild J, Henderson C, Watts J, Wollscheid B and Cooper JA. TITLE Quantitative proteomics identifies a Dab2/integrin module regulating cell migration JOURNAL J Cell Biol 186 (1), 99-111 (2009) PUBMED 19581412 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000222.1. On Jun 11, 2015 this sequence version replaced NM_001006955.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: BC083649.1, FQ100577.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN12840129, SAMN16676810 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression ##RefSeq-Attributes-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-192 JACYVU010000222.1 21199054-21199245 c 193-502 JACYVU010000222.1 21197387-21197696 c 503-613 JACYVU010000222.1 21195707-21195817 c 614-751 JACYVU010000222.1 21194399-21194536 c 752-2145 JACYVU010000222.1 21192894-21194287 c FEATURES Location/Qualifiers source 1..2145 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="11" /map="11q12" gene 1..2145 /gene="Cldnd1" /note="claudin domain containing 1" /db_xref="GeneID:288182" /db_xref="RGD:1359273" exon 1..192 /gene="Cldnd1" /inference="alignment:Splign:2.1.0" exon 193..502 /gene="Cldnd1" /inference="alignment:Splign:2.1.0" CDS 211..972 /gene="Cldnd1" /codon_start=1 /product="claudin domain-containing protein 1" /protein_id="NP_001006956.2" /db_xref="GeneID:288182" /db_xref="RGD:1359273" /translation="
MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYQSPAQENSSDANRIAWEDFMGDEADEKTYNDALFRYNGNLGLWRRCITIPKNTHWYAPPERTESFEVVTKCMSFTLNEQFMEKYVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACVCRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLGLPKNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA"
misc_feature 259..912 /gene="Cldnd1" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" exon 503..613 /gene="Cldnd1" /inference="alignment:Splign:2.1.0" exon 614..751 /gene="Cldnd1" /inference="alignment:Splign:2.1.0" exon 752..2145 /gene="Cldnd1" /inference="alignment:Splign:2.1.0" ORIGIN
gttcctacaagtcccacaaggcccctcggctcagggccgctttggcccggcctagggtggaggcggaggcggaggcgcgggagttatggagggggcgggctctgcagggaagtgcgtcagaggaggcgcggggagagtaggttgctgtggtcggagctggagggcgaagccggtggagtgagaggatgggcgagcagtctgaatgccagaatggataaccgtttcgctacagcctttgtgattgcctgtgtgcttagtcttatctccaccatctacatggccgcctccataggcacagacttctggtatgagtatcaaagtcctgctcaagagaattctagtgatgcgaatagaattgcctgggaagatttcatgggcgatgaggcggatgagaagacctacaacgatgctctgttccggtacaacggcaacttgggattgtggagacgctgtatcaccattcccaaaaacactcactggtatgctccgccggaaaggacagagtcatttgaagtggttacaaaatgcatgagtttcacactaaacgaacagttcatggagaagtatgttgatcctggaaaccacaacagtggcattgacctgcttcggacctacctctggcgctgccagttcctcttaccgtttgttagcttgggtctgatgtgcttcggggctttgattggactttgtgcctgtgtgtgccgcagcctgtaccccaccattgccacaggcattctccatctccttgcaggtctgtgtacgctgggctccgtgagttgttatgttgctggcattgagctgctccatcagaaactagggctgcccaagaacgtatctggggaatttggatggtccttctgcctggcctgcgtctcagctcccttacagttcatggcttctgctctcttcatctgggctgcccacaccaaccggaaggagtacaccttaatgaaggcttatcgtgtggcgtgaagggaggctgccgccgatgattactatttctactatttcttttttactgttgaggttttcccttgtcttcctctcagttgtctttaatttttatttttgtggatacgccattttattctaaaagtcctttttatttatatacagtgccactaaataccatttaaaatgtatgtggttttctttgagtggctcagtcattttaccaaactgatctaggttcagtcagagttcagacagaaagaactttagagatgtgacccagatttgtaaaagaatattagcagtggaaaattgaccccaaacagggtctgctaatgtctgctaaatccagtagtgtagtaactgtgtgtgaaactagaaacgaatttctgtatgatatcggttatcactgtcagaacttcataatcactttcctgtatttagtcagctagcagaaccagcgttcctaaagatgtgtgcatacaaaattgggaaattatctaacatctgtgtccctaaactttggtacattacttcattcgaggtgaaatatggcagctgcttatactgtgattgtctacaagaaaaaaaagtgaaaaatgtttacttgaaattgtagcttttaactgcaaaatttcaattcaatgagaaaagctggttatactttttttttttttaaaactgaaactcattaggattttcagtgccaccaaaccattgtggatttttgctgctcccccctccccccatctggacacaccaggcttattaaagagtactttctttttaacggagaagaatcacagccaattccccaactgttttgtcccagctgagtactatatgggaggtcctatcaatatcgaccccccagagctgggggtcctaccaccacaagatctaaagctgtggccacctactgacctccagttgtgggtctttatttcttgtggtgaaatgatgtgcctttccttgcccagatcccttcctggtgtgtatcaacattactcactgtcttctaattcagtcatttttttataatatgtctgtaaacattgaacttacaaatcttatttatttactccattattgtagcacttcacagattaaaaaaagtgtgactcagtactttcttaccaaatcctaaatctgtcttttttaaaaaataaaaaataaaaaagaaagagaaccatg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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