2024-05-04 17:23:44, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001408871 1135 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus claudin 34B (Cldn34b), mRNA. ACCESSION NM_001408871 XM_001056750 VERSION NM_001408871.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 1135) AUTHORS Gaudet P, Livstone MS, Lewis SE and Thomas PD. TITLE Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium JOURNAL Brief Bioinform 12 (5), 449-462 (2011) PUBMED 21873635 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000391.1. On Jun 29, 2022 this sequence version replaced XM_001056750.5. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMEA5760383, SAMEA5760389 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-154 JACYVU010000391.1 122642-122795 c 155-234 JACYVU010000391.1 118273-118352 c 235-1135 JACYVU010000391.1 116771-117671 c FEATURES Location/Qualifiers source 1..1135 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="X" /map="Xq21" gene 1..1135 /gene="Cldn34b" /note="claudin 34B" /db_xref="GeneID:680342" /db_xref="RGD:1592987" exon 1..154 /gene="Cldn34b" /inference="alignment:Splign:2.1.0" exon 155..234 /gene="Cldn34b" /inference="alignment:Splign:2.1.0" misc_feature 158..160 /gene="Cldn34b" /note="upstream in-frame stop codon" exon 235..1135 /gene="Cldn34b" /inference="alignment:Splign:2.1.0" CDS 260..886 /gene="Cldn34b" /note="claudin-34; rCG36429-like" /codon_start=1 /product="claudin 34B" /protein_id="NP_001395800.1" /db_xref="GeneID:680342" /db_xref="RGD:1592987" /translation="
MLMKNCHHQMGGFALTTVAWLLCCISIGLPQWQVWHYEDPVILKPTVAFVGIWRTCIFHTDSNSSNNRLCHQYSYRDSFVPLYIRINQHLLLVSSFLGLFGKITTIIALSNVSMGRVRRNATCNPFSLSGILNIIASSFLYLAVLFNYIAIVRKWRVSFPPSFHMPSHPHTQKMGSAMALAIIAAVFFLLSGTICLSSNLGKSPHSKI"
misc_feature 311..850 /gene="Cldn34b" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN
taggccagtactaataggccaggtgctcataagccaacaaggagactcaaaggataagggagagtcactgtttccttgtcagctccactggcatactttactgattgccctgtcacatcacctaccaacagttaacttgaagacagcaactgtgtattgatgtgatactgtattgcacacagccaatgaaaaggaagtaataaaaaagctgaaaacttccagacttgctgctagttcacaagtattcactgtcaccattatgttgatgaaaaattgccatcaccaaatgggaggttttgctttgaccacagtggcctggctactttgttgcatatccataggcctccctcagtggcaagtgtggcactatgaagaccctgtgatcctcaagcctacagtggcttttgtgggcatatggagaacctgcattttccacactgacagcaactccagcaacaacagattatgtcaccaatacagctaccgtgattccttcgttcctttgtatattcgaataaaccagcacttgctgctggtttctagctttcttgggctctttgggaaaatcaccaccattattgctctttcgaatgtgagtatgggaagagtacggaggaatgccacctgcaatccattcagcctttcagggattctgaacatcattgctagcagctttctttaccttgctgttttgtttaattacatagccatcgtgcgcaaatggagggtttccttcccaccatctttccatatgccttcccacccacacactcagaagatgggaagtgccatggctttggcaattatagctgcagttttctttctactaagtggcacaatttgcctttcttcaaatttaggcaagtcgccccattccaaaatttaaaagtaaattactacctaacatagccttgaaatgccagcaaagatagtgactagtcttccttcatgtgtctatataaattttcaaacatcttgaaaggatgccaattgtggcctgtgacaaagaaagagtccagttgacttccccttatatttttgggcttctttgtgtcatcttaattcattatttggattgtgggattttgttaaataaaaatctcatttaatgggtagtaataaatttgtgttttac
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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