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2024-11-21 21:48:33, GGRNA : RefSeq release 226 (Sep, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), mRNA. (2604 bp)
hand calcium-binding domain-containing protein 2-like" /codon_start=1 /product="dynein regulatory complex protein 8" /protein_id="NP_001099447.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGEPFSQEEMEEMLSAAIDPESNTINYRDYITMMVIDEN" misc_feature 289..627 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" exon 257..336 /gene="Efcab2" /gene_synonym="RGD1308593" /inference="alignment:Splign:2.1.0" exon 337..416 /gene="...
AA_position 90
Synonym: RGD1308593
NM_001105977.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus TPD52 like 1 (Tpd52l1), mRNA. (1272 bp)
exon 1..122 /gene="Tpd52l1" /inference="alignment:Splign:2.1.0" CDS 104..595 /gene="Tpd52l1" /note="tumor protein D52-like 1" /codon_start=1 /product="tumor protein D53" /protein_id="NP_001037760.1" /db_xref="GeneID:689256" /db_xref="RGD:1594796" /translation="MEAQAQGLLETEPLQGRDGDAIGSADLSSMLSEEEKDELKAELVQLEEEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSRSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTAISRKFGDMRYSIRHSISMPAMRNSPTFKSFEERVETTVTSLKV" misc_feature 194..556 /gene="Tpd52l1" /note="Tumour protein D52 family; Region: TPD52; pfam04201" /db_xref="CDD:461225" exon 123..238 /gene="Tpd52l1" /inference="alignment:...
AA_position 36
NM_001044295.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus microfibril associated protein 5 (Mfap5), mRNA. (881 bp)
codon_start=1 /product="microfibrillar-associated protein 5 precursor" /protein_id="NP_001102114.1" /db_xref="GeneID:362429" /db_xref="RGD:1307919" /translation="MLVFGQKALLLVVALSIPSDWLPLGVSGQRGDDVPETFTDDPNLVNDPSTDDTVLADITPSTDDLASAGDKNTTAECRDEKFACTRLYSVHRPVRQCVHQACFTSLRRMYIINNEICSRLVCKEHEAMKDELCRQMAGLPPRRLRRSNYFRLPPCENMNLQRPDGP" sig_peptide 148..231 /gene="Mfap5" /inference="COORDINATES: ab initio prediction:SignalP:6.0" misc_feature 151..555 /gene="Mfap5" /note="Microfibril-associated glycoprotein (MAGP); Region: MAGP; pfam05507" /db_xref="CDD:461667" exon 206..241 /gene="Mfap5" /inference="...
AA_position 129
NM_001108644.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus stem-loop binding protein like (Slbpl), mRNA. (941 bp)
uncharacterized protein LOC100363294" /protein_id="NP_001257345.2" /db_xref="GeneID:100363294" /db_xref="RGD:2323347" /translation="MSLSSRMEMVSVGVTTEPCHARWEVETDEVVLRRRQKQIDYGKCTPGYQSFLQQVPRAQRQPGFHPQTPNKNRRYSRRSWDAQIRQWRRALHTWDPPSQPLHDRQAEGKAAGNFLRPVDTAPLDDLLDNWPQDPESSENWDRGEKEAQFAYLKVPASCPPQLKDELLHH" misc_feature 344..553 /gene="Slbpl" /gene_synonym="SLBP2" /note="Histone RNA hairpin-binding protein RNA-binding domain; Region: SLBP_RNA_bind; pfam15247" /db_xref="CDD:464587" exon 331..435 /gene="Slbpl" /gene_synonym="SLBP2" /inference="alignment:Splign:2.1.0" exon 436..588 /gene="Slbpl" /gene_...
AA_position 163
Synonym: SLBP2
NM_001270416.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus C-type lectin domain family 12, member A (Clec12a), mRNA. (1441 bp)
domain family 12 member A" /protein_id="NP_001128188.1" /db_xref="GeneID:680338" /db_xref="RGD:1592991" /translation="MSEEIVYADLKFQDSDKKEESQKSDKCGRKVPSAGSYSQHKTVLILILLCLLLFIGVVALGCIFYTTLETEMIKSNQLQRVKEELQENVSLQLMHNLNNSKKIKTLSAMLQNIATQLCQELSKKEPGHKCKPCPKASDWYKDSCYSRFQKYATWQESVEFCSARNASLLKVKNKDELEFIKSKELYNYWLALPPSKMYRSYELLSEKMFLSEGFKRSTYDITKMSCGFIRGEYVYYTNCDEEKYTMCEETASKVQVESVLSDLPEGSIL" misc_feature 598..945 /gene="Clec12a" /note="C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs); Region: CLECT_NK_receptors_like; cd03593" /db_xref="CDD:153063" misc_...
AA_position 174
NM_001134716.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus nucleophosmin 1 (Npm1), transcript variant 3, mRNA. (775 bp)
protein NO38; nucleolar phosphoprotein B23; nucleophosmin (nucleolar phosphoprotein B23, numatrin)" /codon_start=1 /product="nucleophosmin isoform 3" /protein_id="NP_001417038.1" /db_xref="GeneID:25498" /db_xref="RGD:3192" /translation="MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIVEAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVEEDAESEDEDEEDVKLLGMSGKRSAPGGGNKVPQKKVKLDEDDDEDDEDDEDDEE" misc_feature 94..444 /gene="Npm1" /gene_synonym="B23NP" /note="propagated from UniProtKB/Swiss-Prot (P13084.1); Region: Necessary for interaction with APEX1. /evidence=ECO:0000250" misc_...
AA_position 54
Synonym: B23NP
NM_001430109.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus Ly49 stimulatory receptor 5 (Ly49s5), mRNA. (1443 bp)
stimulatory receptor 5" /protein_id="NP_001012767.1" /db_xref="GeneID:503662" /db_xref="RGD:1359728" /translation="MSEQEVPCSTVRFKKSSGLRYQVRPKETQRPREAGCRVPWQLTVIAIGILLSLRLVAVAMLVTNIFQFSHEKHELQKTRNRHPNCSTMEKDINLKEETLRTMSVECTSSNALLDLFNREQNRWYKKTKTVLASPQHPARCVEMHWFCHGIKCYYFIMDIRTWHECKQTCQNYNLSFLKIDDKDELKFLQDHIIRDSYWVGLSYNNIKKEWSWIDSSPLNCDLLACKPLQKTGYCIYFSMTGLHYDDCGKRHLCICEKGMDKIPAPLCSVKERSQSAV" misc_feature 282..635 /gene="Ly49s5" /note="Ly49-like protein, N-terminal region; Region: Ly49; pfam08391" /db_xref="CDD:462461" misc_feature 594..941 /gene="Ly49s5" /note="C-type lectin-like domain (CTLD)...
AA_position 182
NM_001012749.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus Ly-49 stimulatory receptor 3 (Ly49s3), mRNA. (1420 bp)
stimulatory receptor 3" /protein_id="NP_714948.1" /db_xref="GeneID:266768" /db_xref="RGD:628683" /translation="MSKQDVPCSTVRFKKSSGLQYQVRPEETQRPREAGWRVPWQLTVIATGILLSLRLVAVAMLVTNIFQYSNENHELQKTHKRQHNSSTMEKDIKLKEEMLRNMSVESVHYNAFLDLINREQNRWYKKTKTVLASPQHTGGCDEMHWFCYGIKCYYFTMDIRIWRECKQTCQNYSLSFLKIDDKDELKFLQDHIIRDNYWIGSSYNNKKKEWAWIDNSPFDLDFVARTLLRKTGYCLYFSMSGLHDDDCGKRYLCICEKGMDKFPAPLCSVKETSHSAV" misc_feature 249..602 /gene="Ly49s3" /note="Ly49-like protein, N-terminal region; Region: Ly49; pfam08391" /db_xref="CDD:462461" misc_feature 561..908 /gene="Ly49s3" /note="C-type lectin-like domain (CTLD) of...
AA_position 182
NM_153726.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus ring finger protein 41 (Rnf41), transcript variant 4, mRNA. (2015 bp)
protein ligase NRDP1" /codon_start=1 /product="E3 ubiquitin-protein ligase NRDP1 isoform 2" /protein_id="NP_001012195.1" /db_xref="GeneID:362814" /db_xref="RGD:1309557" /translation="MGYDVTRFQGDVDEDLICPICSGVLEEPVQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDSLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLEETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVEEI" misc_feature 168..236 /gene="Rnf41" /note="RING finger (Really Interesting New Gene) domain and U-box domain...
AA_position 106
NM_001012195.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus twinfilin actin-binding protein 2 (Twf2), mRNA. (1582 bp)
in-frame stop codon" CDS 153..1202 /gene="Twf2" /codon_start=1 /product="twinfilin-2" /protein_id="NP_001128710.1" /db_xref="GeneID:684352" /db_xref="RGD:1591460" /translation="MAHQTGIHATEELKEFFAKARAGSIRLIKVIIEDEQLVLGASQEPVGRWDQDYDRAVLPLLDAQEPCYLLFRLDSQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDELFGTVKDDLSLAGYQKHLSSCAAPAPLTSAERELQQIRINEVKTEISVESKHQTLQGLAFPLQPEAQRALQQLKQKTVNYIQLKLDLERETIELVHTEPTNVAQLPSRVPRDAARYHFFLYKHTHEGDSLESVVFIYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFQLEIAKKIEIGDGAELTAEFLYDEVHPKQHAFKQAFAKPKGPGGKRGHKRLIRGPGENGEDS" misc_feature 162..578 /gene="Twf2" /note="N-terminal ADF domain of...
AA_position 118
NM_001135238.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus nucleophosmin 1 (Npm1), transcript variant 2, mRNA. (1182 bp)
protein NO38; nucleolar phosphoprotein B23; nucleophosmin (nucleolar phosphoprotein B23, numatrin)" /codon_start=1 /product="nucleophosmin isoform 2" /protein_id="NP_001417037.1" /db_xref="GeneID:25498" /db_xref="RGD:3192" /translation="MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIVEAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVEEDAESEDEDEEDVKLLGMSGKRSAPGGGNKVPQKKVKLDEDDDEDDEDDEDDEDDDDDDFDEEETEEKVPVKKSVRDTPAKNAQKSNQNGKDLKPSTPRSKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKAH" misc_feature 94..648 /gene="Npm1" /gene_synonym="B23NP" /note="propagated from UniProtKB/Swiss-Prot...
AA_position 54
Synonym: B23NP
NM_001430108.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus calreticulin 4 (Calr4), transcript variant 5, mRNA. (1264 bp)
RGD:1591090" /translation="MLRLGKNRPGQMPEPKGPGPAGLSRAQVQTDGEDVSGGCRGPDICGFGNNRLQVILYHRGKYHENNKTLKCRDWQDSEFIPDPDAKKPDDWNEAMDGVWEGPLIPNVKYKGEWKPRIIDNPNYQGEWIHPEIDNPKYRPDPTICHYHNISVLGLDLWQVKSGSIFDNFLLTNDEEFAEEVGNMTWGLRKDVEQQWRELYEEMEKQKEAEEAKKKREKQRAKQEDIWGLDEEDEEENEEDAEEEAEERPKQEGSGERASVDQKEAHFEQKDEL" misc_feature 771 /gene="Calr4" /note="recombination and DNA strand exchange inhibitor protein; Reviewed; Region: PRK00409" /db_xref="CDD:234750" exon 224..318 /gene="Calr4" /inference="alignment:Splign:2.1.0" exon 319..432 /gene="Calr4" /inference="alignment:Splign:2.1.0" exon 433..576 /gene="...
AA_position 269
NM_001431276.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus small nuclear ribonucleoprotein polypeptide A (Snrpa), mRNA. (1170 bp)
alignment:Splign:2.1.0" misc_feature 71..73 /gene="Snrpa" /note="upstream in-frame stop codon" CDS 86..931 /gene="Snrpa" /codon_start=1 /product="U1 small nuclear ribonucleoprotein A" /protein_id="NP_001008304.1" /db_xref="GeneID:292729" /db_xref="RGD:1307416" /translation="MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAAAPVVGAVQPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK" misc_feature 104..370 /gene="Snrpa" /note...
AA_position 23
NM_001008303.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus nucleophosmin 1 (Npm1), transcript variant 1, mRNA. (1307 bp)
nucleolar protein NO38; nucleolar phosphoprotein B23; nucleophosmin (nucleolar phosphoprotein B23, numatrin)" /codon_start=1 /product="nucleophosmin isoform 1" /protein_id="NP_037124.1" /db_xref="GeneID:25498" /db_xref="RGD:3192" /translation="MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIVEAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVEEDAESEDEDEEDVKLLGMSGKRSAPGGGNKVPQKKVKLDEDDDEDDEDDEDDEDDDDDDFDEEETEEKVPVKKSVRDTPAKNAQKSNQNGKDLKPSTPRSKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQEAIQDLWQWRKSL" misc_feature 94..648 /gene="Npm1" /gene_synonym="B23NP" /note...
AA_position 54
Synonym: B23NP
NM_012992.4 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X34, mRNA. (1999 bp)
gene="Efcab2" /gene_synonym="RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X32" /protein_id="XP_063128233.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQSIQVFP" polyA_site 1999 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 90
Synonym: RGD1308593
XM_063272163.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus kinetochore-localized astrin/SPAG5 binding protein (Knstrn), mRNA. (1490 bp)
db_xref="RGD:1303240" /translation="MATHKAEAQETDFRTTGPPTDLEQCPFPPSSRKFPFESVAADSTEGWAVAAEHHLKRSGEDGGWEQPASGVEPSRPTTMASSKTVCDAQPHSMPSCGLSADTQTRATSKLPVKSKDAEMLRHLHTGGLEPDVTKVTKPRRENGQGKAAETASRRNIRSSYKPLSKQKPEEDLKDKNELLEAVNKQLHQKLTETQGELKDLTQKVELLEKFQDNCLAILESKGLNSGQETQESKQEPSTDPTDSMLLLETLKDELKLFNETAKKQMEELQALKVKLKLKEKERIQFLEQQTLGKDEASDFTIILEEMEQLLEM" misc_feature 70..165 /gene="Knstrn" /gene_synonym="C15orf23; SKAP; Traf4af1" /note="propagated from UniProtKB/Swiss-Prot (Q6AXN6.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 232..597 /gene="Knstrn" /gene_synonym="...
AA_position 251
Synonym: C15orf23; SKAP; Traf4af1
NM_001004264.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus nuclear factor I/C (Nfic), mRNA. (1565 bp)
db_xref="RGD:62016" CDS 1..1320 /gene="Nfic" /note="olfactory epithelium nuclear factor I-C" /codon_start=1 /product="nuclear factor 1 C-type" /protein_id="NP_113755.1" /db_xref="GeneID:29228" /db_xref="RGD:62016" /translation="MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKAEVKQKWASRLLAKLRKDIRPECREDFVLAVTGKKAPGCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAACAHPVLCVQPHHIGVAVKELDLYLAYFVRERDAEQSSSPRTGVGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTGPNFSLGELQGHLAYDLNPASAGMRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYTSPNSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVHSGIARSPHPSSA...
AA_position 58
NM_031567.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus glia maturation factor, beta (Gmfb), transcript variant X2, mRNA. (1129 bp)
includes similarity to: 3 long SRA reads" /db_xref="GeneID:81661" /db_xref="RGD:70910" CDS 511..864 /gene="Gmfb" /codon_start=1 /product="glia maturation factor beta isoform X2" /protein_id="XP_063130762.1" /db_xref="GeneID:81661" /db_xref="RGD:70910" /translation="MKIDKDKRLVVLDEELEGVSPDELKDELPERQPRTFIVYSYKYQHDDGRVSYPLCFIFSSPLGCKPEQQMMYAGSKNKLVQTAELTKVLSRSDVLIDFPSQYSGRAKQPDAQVFSCS" polyA_site 1129 /gene="Gmfb" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 25
XM_063274692.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus trafficking protein particle complex subunit 6B (Trappc6b), transcript variant X2, mRNA. (1113 bp)
CDS 222..587 /gene="Trappc6b" /gene_synonym="RGD1309325" /codon_start=1 /product="trafficking protein particle complex subunit 6B isoform X2" /protein_id="XP_038967906.1" /db_xref="GeneID:299075" /db_xref="RGD:1309325" /translation="MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLSAGKQYLEHASKANSR" misc_feature 228..>572 /gene="Trappc6b" /gene_synonym="RGD1309325" /note="Trs33 subunit of the TRAPP complex; Region: TRAPPC6A_Trs33; cd14944" /db_xref="CDD:271347" misc_feature order(234..236,243..245,255..257,528..533,561..563) /gene="...
AA_position 59
Synonym: RGD1309325
XM_039111978.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus TPD52 like 1 (Tpd52l1), transcript variant X6, mRNA. (1205 bp)
to: 6 ESTs, 80 long SRA reads" /db_xref="GeneID:689256" /db_xref="RGD:1594796" CDS 204..599 /gene="Tpd52l1" /codon_start=1 /product="tumor protein D53 isoform X6" /protein_id="XP_063130668.1" /db_xref="GeneID:689256" /db_xref="RGD:1594796" /translation="MEAQAQGLLETEPLQGRDGDAIGSADLSSMLSEEEKDELKAELVQLEEEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSRSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTAISRKFGDMRRK" polyA_site 1205 /gene="Tpd52l1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 36
XM_063274598.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus solute carrier family 25 member 15 (Slc25a15), mRNA; nuclear gene for mitochondrial product. (1639 bp)
protein_id="NP_001041345.1" /db_xref="GeneID:306574" /db_xref="RGD:1311488" /translation="MKSNPAIQAAIDLTAGAAGGTACVLTGQPFDTMKVKMQTFPDLYRGLTDCCLRTYSQVGFRGFYKGTSPALIANIAENSVLFMCYGFCQQVVRKVVGLDRQAKLSDLQNAAAGSFASAFAALVLCPTELVKCRLQTMYEMETSGKIAASQNTVWSVVKEIFRKDGPLGFYHGLSSTLLREVPGYFFFFGGYELSRSFFASGRSKDELGPIPLMLSGGFGGICLWLAVYPVDCIKSRIQVLSMTGKQTGLIRTFLSIVKNEGGYRLSESRLYDVSFVQPKTCLSGVHYVGILKLGLREGITALYSGLKPTMIRAFPANGALFLAYEYSRKLMMSQLEAC" misc_feature 85..342 /gene="Slc25a15" /gene_synonym="Ab1-114; Ornt1" /note="Mitochondrial carrier protein; Region: Mito_carr; pfam00153" /db_xref="CDD:395101" misc_...
AA_position 204
Synonym: Ab1-114; Ornt1
NM_001047880.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus centrosomal protein 41 (Cep41), transcript variant 1, mRNA. (2481 bp)
of 41 kDa; testis specific gene A14; testis specific, 14; testis-specific gene A14 protein; centrosomal protein 41kDa" /codon_start=1 /product="centrosomal protein of 41 kDa isoform 1" /protein_id="NP_001020941.1" /db_xref="GeneID:500069" /db_xref="RGD:1562034" /translation="MSDSPIDGSPQPEPDYRYKKDELFKRIKVTTFAQLVIQVASLSDQTLEVTAEEIQRLEDSDSATSEADTDIAAKTNGKGSPEEQSPSPVQFINSTGAGDASRSTLQSVISGVGELDVDKGLVKKEEPSGKDKPYPDCPFLLLDVRDRDSYQQCHIVGAYSYPIATLSRTMNPYSNDILEYKNAHGKIIILYDDDERLASQAATTMCERGFENLFMLSGGLKVLAQKFPEGLVTGSLPASCQQALPFGSVRKRPGPKMPALPAENKWRFTPEDLKKIECYLEADQGPANNPSRLNQNNSAGRDLKVPAGRGGQNLPTGCPTSHSN...
AA_position 20
Synonym: Tsga14
NM_001025770.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X31, mRNA. (1919 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X29" /protein_id="XP_063128230.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MTPLGPKNAGLSSWGVGRRPPRVEGLPPPRPPRAARRVCDGISQATGSAPRWRRKRTRRVQVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQSIQVFP" polyA_site 1919 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 114
Synonym: RGD1308593
XM_063272160.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X29, mRNA. (2077 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X27" /protein_id="XP_038946475.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQSIQVFP" misc_feature 1319..>1639 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" polyA_site 2077 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 116
Synonym: RGD1308593
XM_039090547.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus calreticulin 4 (Calr4), transcript variant 3, mRNA. (1474 bp)
GPDICGFGNNRLQVILYHRGKYHENNKTLKCRINKDTHLYTLILRPNATYEVKIDNEKVTGGELEADWDFLPPKKIKDPYARKPRKWDERLQIEDPEDKKPEDWQDSEFIPDPDAKKPDDWNEAMDGVWEGPLIPNVKYKGEWKPRIIDNPNYQGEWIHPEIDNPKYRPDPTICHYHNISVLGLDLWQVKSGSIFDNFLLTNDEEFAEEVGNMTWGLRKDVEQQWRELYEEMEKQKEAEEAKKKREKQRAKQEDIWGLDEEDEEENEEDAEEEAEERPKQEGSGERASVDQKEAHFEQKDEL" misc_feature 981 /gene="Calr4" /note="recombination and DNA strand exchange inhibitor protein; Reviewed; Region: PRK00409" /db_xref="CDD:234750" exon 224..318 /gene="Calr4" /inference="alignment:Splign:2.1.0" exon 319..528 /gene="Calr4" /inference="alignment:Splign:2.1.0" exon 529..642 /gene="...
AA_position 339
NM_001431274.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit (Mettl14), mRNA. (2649 bp)
N6-adenosine-methyltransferase subunit" /codon_start=1 /product="N6-adenosine-methyltransferase non-catalytic subunit" /protein_id="NP_001386178.1" /db_xref="GeneID:295428" /db_xref="RGD:1304822" /translation="MDSRLQEIRERQKLRRQLLAQQLGAESADSIGAVLNSKDEQREIAETRETCRASYDTSAPNSKRKCLDEGETDEDKVEEYKDELEMQQEEENLPYEEEIYKDSSTFLKGTQSLNPHNDYCQHFVDTGHRPQNFIRDVGLADRFEEYPKLRELIRLKDELIAKSNTPPMYLQADIEAFDIRELTPKFDVILLEPPLEEYYRETGIAANEKCWTWDDIMKLEIDEIAAPRSFIFLWCGSGEGLDLGRVCLRKWGYRRCEDICWIKTNKNNPGKTKTLDPKAVFQRTKEHCLMGIKGTVKRSTDGDFIHANVDIDLIITEEPEIGNIEKPVEIFHIIEHFCLGRRRLHLFGRDSTIRPGWLTVGPTLTNSNYNAETYASYFSAPNSYLTGCTE...
AA_position 81
Synonym: RGD1304822
NM_001399249.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus glia maturation factor, beta (Gmfb), mRNA. (1424 bp)
CDS 84..512 /gene="Gmfb" /note="GMF-beta; DNA for thyroid hormone receptor binding site (276bp)" /codon_start=1 /product="glia maturation factor beta" /protein_id="NP_112294.1" /db_xref="GeneID:81661" /db_xref="RGD:70910" /translation="MSESLVVCDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDKRLVVLDEELEGVSPDELKDELPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPLGCKPEQQMMYAGSKNKLVQTAELTKVFEIRNTEDLTEEWLREKLGFFH" misc_feature 87..89 /gene="Gmfb" /note="N-acetylserine. /evidence=ECO:0000269|Ref.4; propagated from UniProtKB/Swiss-Prot (Q63228.2); acetylation site" misc_feature 108..473 /gene="Gmfb" /note="ADF-homology domain of...
AA_position 58
NM_031032.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus glycosylation dependent cell adhesion molecule 1 (Glycam1), mRNA. (584 bp)
gene="Glycam1" /note="SGP50; glyCAM-1; sulfated 50 kDa glycoprotein; endothelial ligand FOR L-selectin" /codon_start=1 /product="glycosylation-dependent cell adhesion molecule 1 precursor" /protein_id="NP_036926.2" /db_xref="GeneID:25258" /db_xref="RGD:2712" /translation="MKFFTVLLFASLAATSLAAVPGSKDELHLRTQPTDAIPASQFTPSSHISKESTSSKDLSKESSIFNEELVSEDNVGTESTKPQSQEAQDGLRSGSSQQEETTSAATSEGKLTMLSQAVQKELGKVIEGFISGVEDIISGASGTVRP" sig_peptide 22..78 /gene="Glycam1" /note="/evidence=ECO:0000255; propagated from UniProtKB/Swiss-Prot (Q04807.1)" mat_peptide 79..459 /gene="Glycam1" /product="Glycosylation-...
AA_position 24
NM_012794.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus MPN domain containing (Mpnd), mRNA. (1566 bp)
gene="Mpnd" /inference="alignment:Splign:2.1.0" CDS 22..1485 /gene="Mpnd" /codon_start=1 /product="MPN domain-containing protein" /protein_id="NP_001078875.1" /db_xref="GeneID:681944" /db_xref="RGD:1589335" /translation="MAAPESLSSTATAEEAPEEDEDEAETEDPERGTGSGGRSGSLGGSGGSTAGPGLALGGALTRRAVTLRVLLKDELLEPGEGVLSIYYLGRKFIGDLKLDGRIVWQENGQVFNSPSAWATHCKKLVNPAKKSGCGWASVKYKGQKLDKYKAAWLRRHQLHMPVAAADESPTSEGEEEELLLEEEEEDVLAGVSSEYKGHRPPGKGSLEPEATPPGKRVDKVRVPVRYCMLGSRDSARNPHTLVEVTSFAAINKFQPFNVAVSSNVLFLLDFHCHLTRSEVVGYLGGRWDINNQMLTVLRAFPCRSRLGDPDTAATVEEEIHQVLFLRGLSLVGWYHSHPHSPAAPSLQDIDAQMEYQLRLQGSNNGFQPCLALLCSPYYS...
AA_position 72
NM_001085406.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X28, mRNA. (1964 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X26" /protein_id="XP_063128229.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MTPLGPKNAGLSSWGVGRRPPRVEGLPPPRPPRAARRVCDGISQATGSAPRWRRKRTRRVQVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGVLFPWRLPLELELHGQSIQVFP" polyA_site 1964 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 114
Synonym: RGD1308593
XM_063272159.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X27, mRNA. (1924 bp)
gene_synonym="RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X25" /protein_id="XP_063128228.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MGSPRRRAPHQDGGGKGPGEYREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGEPFSQEEMEEMLSAAIDPESNTINYRDYITMMVIDEN" polyA_site 1924 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 99
Synonym: RGD1308593
XM_063272158.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X26, mRNA. (2122 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X24" /protein_id="XP_038946473.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGVLFPWRLPLELELHGQSIQVFP" misc_feature 1319..>1636 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" polyA_site 2122 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 116
Synonym: RGD1308593
XM_039090545.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus glia maturation factor, beta (Gmfb), transcript variant X1, mRNA. (849 bp)
long SRA reads" /db_xref="GeneID:81661" /db_xref="RGD:70910" CDS 132..584 /gene="Gmfb" /codon_start=1 /product="glia maturation factor beta isoform X1" /protein_id="XP_063130761.1" /db_xref="GeneID:81661" /db_xref="RGD:70910" /translation="MSESLVVCDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDKRLVVLDEELEGVSPDELKDELPERQPRTFIVYSYKYQHDDGRVSYPLCFIFSSPLGCKPEQQMMYAGSKNKLVQTAELTKVLSRSDVLIDFPSQYSGRAKQPDAQVFSCS" polyA_site 849 /gene="Gmfb" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 58
XM_063274691.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus TPD52 like 1 (Tpd52l1), transcript variant X5, mRNA. (808 bp)
ESTs, 14 long SRA reads, 7 Proteins" /db_xref="GeneID:689256" /db_xref="RGD:1594796" CDS 206..658 /gene="Tpd52l1" /codon_start=1 /product="tumor protein D53 isoform X5" /protein_id="XP_063130664.1" /db_xref="GeneID:689256" /db_xref="RGD:1594796" /translation="MEAQAQGLLETEPLQGRDGDAIGSADLSSMLSEEEKDELKAELVQLEEEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSRSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTAISRKFGDMRNSPTFKSFEERVETTVTSLKV" ORIGIN //...
AA_position 36
XM_063274594.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X25, mRNA. (1976 bp)
gene="Efcab2" /gene_synonym="RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X23" /protein_id="XP_038946472.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGVLFPWRLPLELELHGEPFSQEEMEEMLSAAIDPESNTINYRDYITMMVIDEN" misc_feature 1319..1702 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" polyA_site 1976 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence...
AA_position 90
Synonym: RGD1308593
XM_039090544.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus syntrophin, alpha 1 (Snta1), mRNA. (2135 bp)
RGD:1307068" /translation="MASGRRAPRTGLLELRSGAGSGAGGERWQRVLLTLAEDALTVSPADGEPGPEPEPAQLNGAAEPGAASPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSVGWDSPPASPLQRQPSSPGPQPRNLNEAKHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDTLFLRAKDEASARSWAGAIQAQISTFIPWVKDELQALLTATGTAGSQDIKQIGWLTEQLPSGGTAPTLALLTEKELLLYCSLPQTREALSRPARTAPLIATRLVHSGPSKGSVPYDAELSFALRTGTRHGVDTHLFSVESPQELAAWTRQLVDGCHRAAEGVQEVSTACTWNGRPCNLSVHIDKGFTLWAAEPGATRAVLLRQPFEKLQMSSDDGMSLLFLDFGGAEGEIQLDLHSCPKTMVFIIHSFLSAKVTRLGLLA" misc_feature 348..596 /gene="Snta1" /note="PDZ domain of syntrophins,...
AA_position 270
NM_001100901.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus ring finger protein 122 (Rnf122), transcript variant 1, mRNA. (1744 bp)
is encoded by transcript variant 1" /codon_start=1 /product="RING finger protein 122 isoform 1" /protein_id="NP_001386200.1" /db_xref="GeneID:502091" /db_xref="RGD:1561238" /translation="MHPFQWCNGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFISKLRNQAQSERYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIAGPTETSQSIGILLDELV" misc_feature 603..743 /gene="Rnf122" /gene_synonym="RGD1561238" /note="RING finger, H2 subclass, found in RING finger protein 122 (RNF122) and similar proteins; Region: RING-H2_RNF122; cd16676" /db_xref="CDD:438338" misc_feature order...
AA_position 103
Synonym: RGD1561238
NM_001399271.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X24, mRNA. (1761 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X22" /protein_id="XP_038946471.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGSNIWIVANELQTDQGVSNDDRWGLFEGNG" misc_feature 1319..>1636 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" ORIGIN //...
AA_position 116
Synonym: RGD1308593
XM_039090543.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X23, mRNA. (2019 bp)
gene="Efcab2" /gene_synonym="RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X21" /protein_id="XP_063128227.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQRALFLVSLSKCFPDCKWLGGQSLLPVGTLSLLQLERSSASSAQLPDAQPDLSHVT" polyA_site 2019 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 90
Synonym: RGD1308593
XM_063272157.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus zinc finger and BTB domain containing 43 (Zbtb43), mRNA. (5108 bp)
NP_001012094.1" /db_xref="GeneID:311872" /db_xref="RGD:1310287" /translation="MPTNVYSSQIGHQGQSKVRFHQSPTCRTTLNKIGDEMEPGTNSFQVEFPDFSSTILQKLNQQRQQGQLCDVSIVVQGHIFQAHKAVLAASSPYFCDQVLLKNSRRIVLPDVMNPRVFENILLFSYTGRLVMPAPEIVSYLTAASFLQMWHVVDKCTEVLEGNPTVLCQKLNHGSDHQSPSSSNYNGLAESFELGSGGHTDFPKAQELRDGENEEESTKDELSSQVTEHEYLPSNSSTEHDRLSTEMASQDGEEGTNDSTEFHYTRPLYSKPSIMPHRRWIHVKPERLEQPWDGMDVHAAYDEHQVSESVNTMQTDHSAQPSGAEEEFQIVEKKVEVEFDEHAEGSNYDEQVDFYGSSMEEFSGEKLGGGLIGHKQETALAAGYSENIEMVMGIKEEASHLGFSATDKLYPCQCGKSFTHKSQRDRHMSMHLGLRPYGCSVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTKSYEAAKAGQNTTEAN" misc_feature...
AA_position 218
Synonym: Zfp297b
NM_001012094.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus trafficking protein particle complex subunit 6B (Trappc6b), mRNA. (1165 bp)
gene_synonym="RGD1309325" /note="trafficking protein particle complex 6B" /codon_start=1 /product="trafficking protein particle complex subunit 6B" /protein_id="NP_001100203.1" /db_xref="GeneID:299075" /db_xref="RGD:1309325" /translation="MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQKL" misc_feature 185..646 /gene="Trappc6b" /gene_synonym="RGD1309325" /note="Trs33 subunit of the TRAPP complex; Region: TRAPPC6A_Trs33; cd14944" /db_xref="CDD:271347" misc_feature order...
AA_position 59
Synonym: RGD1309325
NM_001106733.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus calreticulin 4 (Calr4), transcript variant 4, mRNA. (1570 bp)
DKGLQTTEDAKFYALSARFKPFSNENETLVVQFSVKHEQGIDCGGGYVKLFPATLNQEDMHSESQYYIMFGPDICGFGNNRLQVILYHRGKYHENNKTLKCRDWQDSEFIPDPDAKKPDDWNEAMDGVWEGPLIPNVKYKGEWKPRIIDNPNYQGEWIHPEIDNPKYRPDPTICHYHNISVLGLDLWQVKSGSIFDNFLLTNDEEFAEEVGNMTWGLRKDVEQQWRELYEEMEKQKEAEEAKKKREKQRAKQEDIWGLDEEDEEENEEDAEEEAEERPKQEGSGERASVDQKEAHFEQKDEL" misc_feature 223..918 /gene="Calr4" /note="Calreticulin family; Region: Calreticulin; pfam00262" /db_xref="CDD:459737" misc_feature 1077 /gene="Calr4" /note="recombination and DNA strand exchange inhibitor protein; Reviewed; Region: PRK00409" /db_xref="CDD:234750" exon 224..325 /gene="Calr4" /...
AA_position 371
NM_001431275.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X22, mRNA. (1871 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X20" /protein_id="XP_063128226.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MTPLGPKNAGLSSWGVGRRPPRVEGLPPPRPPRAARRVCDGISQATGSAPRWRRKRTRRVQVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQRALFLASLFPKRKWKKCCLLQLILNQTPLITETT" polyA_site 1871 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 114
Synonym: RGD1308593
XM_063272156.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X21, mRNA. (2000 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X19" /protein_id="XP_063128225.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGEPFSQEEMEEMLSAAIDPESNTINYRDYITMMVIDEN" polyA_site 2000 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 113
Synonym: RGD1308593
XM_063272155.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X20, mRNA. (1851 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X18" /protein_id="XP_063128224.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MTPLGPKNAGLSSWGVGRRPPRVEGLPPPRPPRAARRVCDGISQATGSAPRWRRKRTRRVQVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGEPFSQEEMEEMLSAAIDPESNTINYRDYITMMVIDEN" polyA_site 1851 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 114
Synonym: RGD1308593
XM_063272154.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X19, mRNA. (1969 bp)
gene_synonym="RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X17" /protein_id="XP_038946466.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MGSPRRRAPHQDGGGKGPGEYREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGVLFPWRLPLELELHGEPFSQEEMEEMLSAAIDPESNTINYRDYITMMVIDEN" misc_feature 1255..1695 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" polyA_site 1969 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence...
AA_position 99
Synonym: RGD1308593
XM_039090538.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X18, mRNA. (2029 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X16" /protein_id="XP_038946465.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQRALFLASLFPKRKWKKCCLLQLILNQTPLITETT" misc_feature 1319..>1642 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" polyA_site 2029 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN...
AA_position 116
Synonym: RGD1308593
XM_039090537.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X17, mRNA. (2009 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X15" /protein_id="XP_006250381.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGEPFSQEEMEEMLSAAIDPESNTINYRDYITMMVIDEN" misc_feature 1319..1735 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" polyA_site 2009 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]"...
AA_position 116
Synonym: RGD1308593
XM_006250319.5 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus microfibril associated protein 5 (Mfap5), transcript variant X1, mRNA. (1039 bp)
codon_start=1 /product="microfibrillar-associated protein 5 isoform X1" /protein_id="XP_017448192.1" /db_xref="GeneID:362429" /db_xref="RGD:1307919" /translation="MLVFGQKALLLVVALSIPSDWLPLGVSGQRGDDVPETFTDDPNLVNDPSTDDTVLADITPSTDDLASAGDKNTTAECRDEKFACTRLYSVHRPVRQCVHQACFTSLRRMYIINNEICSRLVCKEHEAMKDELCRQMAGLPPRRLRRSNYFRLPPCENMNLQRPDGP" misc_feature 345..749 /gene="Mfap5" /note="Microfibril-associated glycoprotein (MAGP); Region: MAGP; pfam05507" /db_xref="CDD:461667" polyA_site 1039 /gene="Mfap5" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 129
XM_017592703.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X16, mRNA. (2012 bp)
gene_synonym="RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X14" /protein_id="XP_063128223.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MGSPRRRAPHQDGGGKGPGEYREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQRALFLVSLSKCFPDCKWLGGQSLLPVGTLSLLQLERSSASSAQLPDAQPDLSHVT" polyA_site 2012 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 99
Synonym: RGD1308593
XM_063272153.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

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Redirect URI : http://ggrna.dbcls.jp/rn/aa%3aKDEL
lang : en | div : | spe : rn | query_string : aa:KDEL | format : html | download : 

0.000 | 0.000 | search_start;
0.207 | 0.207 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(aa:KDEL)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.367 | 0.160 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(aa:KDEL)?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.373 | 0.006 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]