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2024-03-28 18:08:34, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

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Rattus norvegicus transmembrane protein 40 (Tmem40), transcript variant 1, mRNA. (1123 bp)
gene_synonym="RGD1306976" /note="isoform 1 is encoded by transcript variant 1" /codon_start=1 /product="transmembrane protein 40 isoform 1" /protein_id="NP_001399832.1" /db_xref="GeneID:680858" /db_xref="RGD:1587025" /translation="MEASGSSSQSPNSSAVHRETEDLNHSSDEDKHSRGPRKHRRKSHRDSSPGADHGELEVLKDELQLYGGAAGEMVLAGESGLRRRGSGSAEGEVEASQLNRLNIKKDDEFFHFVLLCFAIGALLVCYHYYSDWFMSLGVGLLTFASLETIGIYFGLVYRIHSVLQGFIPLLQKFRLPGFRRTN" misc_feature 228..587 /gene="Tmem40" /gene_synonym="RGD1306976" /note="Transmembrane protein 40 family; Region: TMEM40; pfam15817" /db_xref="CDD:374141" exon 118..192 /gene="Tmem40" /...
AA_position 60
Synonym: RGD1306976
NM_001412903.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus transmembrane protein 40 (Tmem40), transcript variant 3, mRNA. (1183 bp)
Tmem40" /gene_synonym="RGD1306976" /note="isoform 3 is encoded by transcript variant 3" /codon_start=1 /product="transmembrane protein 40 isoform 3" /protein_id="NP_001178502.1" /db_xref="GeneID:680858" /db_xref="RGD:1587025" /translation="MEASGSSSQSPNSSAVHRETEDLNHPETEFHKQHGKARERYERDKGADHGELEVLKDELQLYGGAAGEMVLAGESGLRRRGSGSAEGEVEASQLNRLNIKKDDEFFHFVLLCFAIGALLVCYHYYSDWFMSLGVGLLTFASLETIGIYFGLVYRIHSVLQGFIPLLQKFRLPGFRRTN" misc_feature 288..647 /gene="Tmem40" /gene_synonym="RGD1306976" /note="Transmembrane protein 40 family; Region: TMEM40; pfam15817" /db_xref="CDD:374141" exon 118..252 /gene="...
AA_position 80
Synonym: RGD1306976
NM_001191573.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus glycosylation dependent cell adhesion molecule 1 (Glycam1), mRNA. (584 bp)
gene="Glycam1" /note="SGP50; glyCAM-1; sulfated 50 kDa glycoprotein; endothelial ligand FOR L-selectin" /codon_start=1 /product="glycosylation-dependent cell adhesion molecule 1 precursor" /protein_id="NP_036926.2" /db_xref="GeneID:25258" /db_xref="RGD:2712" /translation="MKFFTVLLFASLAATSLAAVPGSKDELHLRTQPTDAIPASQFTPSSHISKESTSSKDLSKESSIFNEELVSEDNVGTESTKPQSQEAQDGLRSGSSQQEETTSAATSEGKLTMLSQAVQKELGKVIEGFISGVEDIISGASGTVRP" sig_peptide 22..78 /gene="Glycam1" /note="/evidence=ECO:0000255; propagated from UniProtKB/Swiss-Prot (Q04807.1)" mat_peptide 79..459 /gene="Glycam1" /product="Glycosylation-...
AA_position 24
NM_012794.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus stem-loop binding protein like (Slbpl), mRNA. (941 bp)
uncharacterized protein LOC100363294" /protein_id="NP_001257345.2" /db_xref="GeneID:100363294" /db_xref="RGD:2323347" /translation="MSLSSRMEMVSVGVTTEPCHARWEVETDEVVLRRRQKQIDYGKCTPGYQSFLQQVPRAQRQPGFHPQTPNKNRRYSRRSWDAQIRQWRRALHTWDPPSQPLHDRQAEGKAAGNFLRPVDTAPLDDLLDNWPQDPESSENWDRGEKEAQFAYLKVPASCPPQLKDELLHH" misc_feature 344..553 /gene="Slbpl" /gene_synonym="SLBP2" /note="Histone RNA hairpin-binding protein RNA-binding domain; Region: SLBP_RNA_bind; pfam15247" /db_xref="CDD:434569" exon 331..435 /gene="Slbpl" /gene_synonym="SLBP2" /inference="alignment:Splign:2.1.0" exon 436..588 /gene="Slbpl" /gene_...
AA_position 163
Synonym: SLBP2
NM_001270416.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus similar to human chromosome 5 open reading frame 24 (C17h5orf24), mRNA. (4397 bp)
Splign:2.1.0" CDS 230..799 /gene="C17h5orf24" /gene_synonym="RGD1566359" /codon_start=1 /product="UPF0461 protein C5orf24 homolog" /protein_id="NP_001387699.1" /db_xref="GeneID:498701" /db_xref="RGD:1566359" /translation="MMHPVAGGNPAFCGPGKPPCLSDDAAMRAADQFDLYSSQQSKYSHTVSHKPMLCQRQDPLNEAHLQPTSGRNTEIKDELKKKKNLNRSGKRGRPSGTTKSAGYRTSTGRPLGTTKAAGFKTSPGRPLGTTKAAGYKVSPGRPPGSIKALSRLADLGYGCGTAAFPYPMMHSRVVHGVQETSGEVKPPSE" misc_feature 230..796 /gene="C17h5orf24" /gene_synonym="RGD1566359" /note="Family of unknown function (DUF5568); Region: DUF5568; pfam17724" /db_xref="CDD:435992" ORIGIN // REFERENCE 1...
AA_position 76
Synonym: RGD1566359
NM_001400770.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus mitochondrial ribosomal protein L15 (Mrpl15), transcript variant 3, mRNA; nuclear gene for mitochondrial product. (1109 bp)
GeneID:297799" /db_xref="RGD:1304796" /translation="MAGMAFGRGTSLDLLRSLPRVSLANLKPSLNSRKRERRPRDRRRGRKCGRGHKGERQRGTRPRLGFEGGQTPFYIRIPKYGFNEGHRHQYQPLSLRRLQYLIDLGRVDPTQPIDLTQLVNGRGVTIQPLKRDYGVQLVEEGADTFQAKVNIEVQMASELAIAAIEKNGGVVTTAFYDPRSLEILCKPVPFFLRGQPIPKRMLPPEALVPYYTDAKNRGYLADPAKFPEARLELAMKYGYVLPDVTKDELFRMLSTRKDPRQIFFGLAPGWIVNMADKKILKPTDENLLKYYSS" misc_feature 222..584 /gene="Mrpl15" /note="Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; Region: Ribosomal_L27A; pfam00828" /db_xref="CDD:425890" exon 174..328 /gene="Mrpl15" /inference="alignment:Splign:2.1.0" exon 329..488 /gene="Mrpl15" /inference...
AA_position 246
NM_001399007.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), mRNA. (2604 bp)
hand calcium-binding domain-containing protein 2-like" /codon_start=1 /product="dynein regulatory complex protein 8" /protein_id="NP_001099447.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGEPFSQEEMEEMLSAAIDPESNTINYRDYITMMVIDEN" misc_feature <355..639 /gene="Efcab2" /gene_synonym="RGD1308593" /note="Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]; Region: FRQ1; COG5126" /db_xref="CDD:227455" exon 257..336 /gene="Efcab2" /gene_synonym="RGD1308593" /...
AA_position 90
Synonym: RGD1308593
NM_001105977.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus trafficking protein particle complex subunit 6B (Trappc6b), mRNA. (1165 bp)
gene_synonym="RGD1309325" /note="trafficking protein particle complex 6B" /codon_start=1 /product="trafficking protein particle complex subunit 6B" /protein_id="NP_001100203.1" /db_xref="GeneID:299075" /db_xref="RGD:1309325" /translation="MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQKL" misc_feature 185..646 /gene="Trappc6b" /gene_synonym="RGD1309325" /note="Trs33 subunit of the TRAPP complex; Region: TRAPPC6A_Trs33; cd14944" /db_xref="CDD:271347" misc_feature order...
AA_position 59
Synonym: RGD1309325
NM_001106733.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus TPD52 like 1 (Tpd52l1), mRNA. (1272 bp)
exon 1..122 /gene="Tpd52l1" /inference="alignment:Splign:2.1.0" CDS 104..595 /gene="Tpd52l1" /note="tumor protein D52-like 1" /codon_start=1 /product="tumor protein D53" /protein_id="NP_001037760.1" /db_xref="GeneID:689256" /db_xref="RGD:1594796" /translation="MEAQAQGLLETEPLQGRDGDAIGSADLSSMLSEEEKDELKAELVQLEEEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSRSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTAISRKFGDMRYSIRHSISMPAMRNSPTFKSFEERVETTVTSLKV" misc_feature 194..556 /gene="Tpd52l1" /note="tumor protein D52 family; Region: TPD52; pfam04201" /db_xref="CDD:427780" exon 123..238 /gene="Tpd52l1" /inference="alignment:...
AA_position 36
NM_001044295.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus ring finger protein 41 (Rnf41), transcript variant 4, mRNA. (2015 bp)
protein ligase NRDP1" /codon_start=1 /product="E3 ubiquitin-protein ligase NRDP1 isoform 2" /protein_id="NP_001012195.1" /db_xref="GeneID:362814" /db_xref="RGD:1309557" /translation="MGYDVTRFQGDVDEDLICPICSGVLEEPVQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDSLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLEETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVEEI" misc_feature 168..236 /gene="Rnf41" /note="RING finger (Really Interesting New Gene) domain and U-box domain...
AA_position 106
NM_001012195.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus nuclear factor I/B (Nfib), transcript variant 3, mRNA. (8801 bp)
by transcript variant 3; olfactory epithelium nuclear factor I-B; nuclear factor 1 B-type" /codon_start=1 /product="nuclear factor 1 B-type isoform 3" /protein_id="NP_001385868.1" /db_xref="GeneID:29227" /db_xref="RGD:62015" /translation="MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFLAYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPNSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSTSPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTPP...
AA_position 58
NM_001398939.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus ring finger protein 41 (Rnf41), transcript variant 1, mRNA. (2297 bp)
NRDP1" /codon_start=1 /product="E3 ubiquitin-protein ligase NRDP1 isoform 1" /protein_id="NP_001387996.1" /db_xref="GeneID:362814" /db_xref="RGD:1309557" /translation="MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDSLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLEETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVEEI" misc_feature 421..549 /gene="Rnf41" /note="Modified RING finger, HC subclass (C3HC3D-type), found in neuregulin...
AA_position 126
NM_001401067.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus ring finger protein 41 (Rnf41), transcript variant 3, mRNA. (2307 bp)
NRDP1" /codon_start=1 /product="E3 ubiquitin-protein ligase NRDP1 isoform 1" /protein_id="NP_001387998.1" /db_xref="GeneID:362814" /db_xref="RGD:1309557" /translation="MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDSLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLEETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVEEI" misc_feature 431..559 /gene="Rnf41" /note="Modified RING finger, HC subclass (C3HC3D-type), found in neuregulin...
AA_position 126
NM_001401069.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus ring finger protein 41 (Rnf41), transcript variant 2, mRNA. (2389 bp)
NRDP1" /codon_start=1 /product="E3 ubiquitin-protein ligase NRDP1 isoform 1" /protein_id="NP_001387997.1" /db_xref="GeneID:362814" /db_xref="RGD:1309557" /translation="MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDSLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLEETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVEEI" misc_feature 513..641 /gene="Rnf41" /note="Modified RING finger, HC subclass (C3HC3D-type), found in neuregulin...
AA_position 126
NM_001401068.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X19, mRNA. (791 bp)
GeneID:289280" /db_xref="RGD:1308593" CDS 236..532 /gene="Efcab2" /gene_synonym="RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X13" /protein_id="XP_038946479.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGVLFPWRLPLELELHGEPFSQEEMEEMLSAAIDPESNTINYRDYITMMVIDEN" misc_feature <239..529 /gene="Efcab2" /gene_synonym="RGD1308593" /note="Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]; Region: FRQ1; COG5126" /db_xref="CDD:227455" ORIGIN //...
AA_position 35
Synonym: RGD1308593
XM_039090551.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X18, mRNA. (728 bp)
GeneID:289280" /db_xref="RGD:1308593" CDS 173..469 /gene="Efcab2" /gene_synonym="RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X13" /protein_id="XP_038946478.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGVLFPWRLPLELELHGEPFSQEEMEEMLSAAIDPESNTINYRDYITMMVIDEN" misc_feature <176..466 /gene="Efcab2" /gene_synonym="RGD1308593" /note="Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]; Region: FRQ1; COG5126" /db_xref="CDD:227455" ORIGIN //...
AA_position 35
Synonym: RGD1308593
XM_039090550.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus B-cell receptor-associated protein 31 (Bcap31), mRNA. (1231 bp)
protein 31" /protein_id="NP_001004224.1" /db_xref="GeneID:293852" /db_xref="RGD:1302944" /translation="MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFVVLIVILVLLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLVTLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGTAEDGGKLDVGSPEMKLEENKILKTDLKKLKDELASTKKKLEKAENEALAMQKQSEGLTKEYDRLLEEHAKLQASVRGPSDKKEE" misc_feature 89..496 /gene="Bcap31" /gene_synonym="Bap31" /note="B-cell receptor-associated protein 31-like; Region: Bap31; pfam05529" /db_xref="CDD:428511" misc_feature 662..823 /gene="Bcap31" /gene_synonym="Bap31" /note="Bap31/Bap29 cytoplasmic...
AA_position 191
Synonym: Bap31
NM_001004224.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus glia maturation factor, beta (Gmfb), transcript variant X3, mRNA. (1123 bp)
introns" /db_xref="GeneID:81661" /db_xref="RGD:70910" CDS 789..1097 /gene="Gmfb" /codon_start=1 /product="glia maturation factor beta isoform X3" /protein_id="XP_038949612.1" /db_xref="GeneID:81661" /db_xref="RGD:70910" /translation="MSESLVVCDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDKRLVVLDEELEGVSPDELKDELPERQPRPSLCIVINTSTTMAGSPTLCALSSPVLWGANLSSR" misc_feature 813..>989 /gene="Gmfb" /note="Actin depolymerization factor/cofilin- and gelsolin-like domains; Region: ADF_gelsolin; cl15697" /db_xref="CDD:449582" ORIGIN //...
AA_position 58
XM_039093684.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus glia maturation factor, beta (Gmfb), transcript variant X2, mRNA. (2431 bp)
with support for all annotated introns" /db_xref="GeneID:81661" /db_xref="RGD:70910" CDS 1208..1540 /gene="Gmfb" /codon_start=1 /product="glia maturation factor beta isoform X2" /protein_id="XP_038949611.1" /db_xref="GeneID:81661" /db_xref="RGD:70910" /translation="MKIDKDKRLVVLDEELEGVSPDELKDELPERQPRTFIVYSYKYQHDDGRVSYPLCFIFSSPLGCKPEQQMMYAGSKNKLVQTAELTKVFEIRNTEDLTEEWLREKLGFFH" misc_feature <1208..1501 /gene="Gmfb" /note="ADF-homology domain of glia maturation factor beta and related proteins; Region: ADF_GMF-beta_like; cd11283" /db_xref="CDD:200439" ORIGIN //...
AA_position 25
XM_039093683.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus C-type lectin domain family 12, member A (Clec12a), mRNA. (1441 bp)
domain family 12 member A" /protein_id="NP_001128188.1" /db_xref="GeneID:680338" /db_xref="RGD:1592991" /translation="MSEEIVYADLKFQDSDKKEESQKSDKCGRKVPSAGSYSQHKTVLILILLCLLLFIGVVALGCIFYTTLETEMIKSNQLQRVKEELQENVSLQLMHNLNNSKKIKTLSAMLQNIATQLCQELSKKEPGHKCKPCPKASDWYKDSCYSRFQKYATWQESVEFCSARNASLLKVKNKDELEFIKSKELYNYWLALPPSKMYRSYELLSEKMFLSEGFKRSTYDITKMSCGFIRGEYVYYTNCDEEKYTMCEETASKVQVESVLSDLPEGSIL" misc_feature 598..945 /gene="Clec12a" /note="C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs); Region: CLECT_NK_receptors_like; cd03593" /db_xref="CDD:153063" misc_...
AA_position 174
NM_001134716.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus trafficking protein particle complex subunit 6B (Trappc6b), transcript variant X1, mRNA. (1115 bp)
CDS 224..589 /gene="Trappc6b" /gene_synonym="RGD1309325" /codon_start=1 /product="trafficking protein particle complex subunit 6B isoform X1" /protein_id="XP_038967906.1" /db_xref="GeneID:299075" /db_xref="RGD:1309325" /translation="MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLSAGKQYLEHASKANSR" misc_feature 230..>574 /gene="Trappc6b" /gene_synonym="RGD1309325" /note="Trs33 subunit of the TRAPP complex; Region: TRAPPC6A_Trs33; cd14944" /db_xref="CDD:271347" misc_feature order(236..238,245..247,257..259,530..535,563..565) /gene="...
AA_position 59
Synonym: RGD1309325
XM_039111978.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus hematopoietically expressed homeobox (Hhex), mRNA. (1602 bp)
HHEX" /protein_id="NP_077361.1" /db_xref="GeneID:79237" /db_xref="RGD:619932" /translation="MQFPHPGPAAAPAVGVPLYAPTPLLQPAHPTPFYIDDILGRGPAAPTPTPTLPSPNSSFTSLVSSYRTPVYEPTPVHPAFSHHPAAALAAAYGPGGFGGPLYPFPRTVNDYTHALLRHDPLGKPLLWNPFLQRPLHKRKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRLKQENPQSNKKDELDSLDTSCDQGQDLPSEQNKGASLDSSQCSPSPASPEDPESEISEDSDQEVDIEGDKGYFNAG" misc_feature order(426..440,444..446,495..497,513..515,552..554, 558..563,570..575,579..587,591..596) /gene="Hhex" /gene_synonym="Hex" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order...
AA_position 206
Synonym: Hex
NM_024385.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus nuclear factor I/B (Nfib), transcript variant 2, mRNA. (9023 bp)
by transcript variant 2; olfactory epithelium nuclear factor I-B; nuclear factor 1 B-type" /codon_start=1 /product="nuclear factor 1 B-type isoform 2" /protein_id="NP_113754.1" /db_xref="GeneID:29227" /db_xref="RGD:62015" /translation="MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFLAYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPNSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSTSPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTPPPPS...
AA_position 58
NM_031566.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus Ly49 stimulatory receptor 5 (Ly49s5), mRNA. (1443 bp)
stimulatory receptor 5" /protein_id="NP_001012767.1" /db_xref="GeneID:503662" /db_xref="RGD:1359728" /translation="MSEQEVPCSTVRFKKSSGLRYQVRPKETQRPREAGCRVPWQLTVIAIGILLSLRLVAVAMLVTNIFQFSHEKHELQKTRNRHPNCSTMEKDINLKEETLRTMSVECTSSNALLDLFNREQNRWYKKTKTVLASPQHPARCVEMHWFCHGIKCYYFIMDIRTWHECKQTCQNYNLSFLKIDDKDELKFLQDHIIRDSYWVGLSYNNIKKEWSWIDSSPLNCDLLACKPLQKTGYCIYFSMTGLHYDDCGKRHLCICEKGMDKIPAPLCSVKERSQSAV" misc_feature 282..635 /gene="Ly49s5" /note="Ly49-like protein, N-terminal region; Region: Ly49; pfam08391" /db_xref="CDD:429969" misc_feature 594..941 /gene="Ly49s5" /note="C-type lectin-like domain (CTLD)...
AA_position 182
NM_001012749.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus Ly49 inhibitory receptor 5 (Ly49i5), mRNA. (1408 bp)
inhibitory receptor 5" /protein_id="NP_001009501.1" /db_xref="GeneID:494211" /db_xref="RGD:1359210" /translation="MTEQEVTYTTVRFHKSSVFQNEVRSEETQSAKEIGHRESSVPWKLIVIALGILCLLLLVTVAVLVTNIFQYRHELQKTRNRHHNCSTMENDINLKEETLRNMSVQCIPSNTLLNLFNREQNRWYKKTKTVLASPQHTARCVEMHWFCHGIKCYYFIMDIRTWHECKQTCQNYNLSFLKIDDKDELKFLQEHFIRESYWIGLSYNNIKKEWSWIDNSPLNCDLLACKPLQKTGYCIYFSMTGLHYDDCGKRHLCICEKGMDKITAPLCSVKERSQSAA" misc_feature 272..619 /gene="Ly49i5" /note="Ly49-like protein, N-terminal region; Region: Ly49; pfam08391" /db_xref="CDD:429969" misc_feature 578..925 /gene="Ly49i5" /note="C-type lectin-like domain (CTLD)...
AA_position 182
NM_001009501.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus Ly49 stimulatory receptor 4 (Ly49s4), transcript variant 1, coding, mRNA. (1411 bp)
stimulatory receptor 4" /protein_id="NP_001009487.1" /db_xref="GeneID:494195" /db_xref="RGD:1549723" /translation="MSKQDVPCSTVRFKKSSGLWYQVRPEETQRPRETGCRVPWQLTVIGIGILLSLRLVAVAMLLTNIFQYSNENHELQKTQNRHHNCSTMEKDIKLKEEILRTMSAESVHYNALLDLINREQNRWYKKTKTVLASPQRTGGCDEMHWFCYGIKCYYFTMDIRIWRECKQTCQNYSLSFLKIDVKDELKFLQDHIIRDNYWIGSSYNNKKKEWSWIDNSPFNLDFVARNSLRKTGYCMYFSMAGLHDDDCGKRYLCICEKGMDKIPAPLCSVKERSHSAV" misc_feature 249..602 /gene="Ly49s4" /note="Ly49-like protein, N-terminal region; Region: Ly49; pfam08391" /db_xref="CDD:429969" misc_feature 561..908 /gene="Ly49s4" /note="C-type lectin-like domain (CTLD)...
AA_position 182
NM_001009487.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus Ly-49 stimulatory receptor 3 (Ly49s3), mRNA. (1420 bp)
stimulatory receptor 3" /protein_id="NP_714948.1" /db_xref="GeneID:266768" /db_xref="RGD:628683" /translation="MSKQDVPCSTVRFKKSSGLQYQVRPEETQRPREAGWRVPWQLTVIATGILLSLRLVAVAMLVTNIFQYSNENHELQKTHKRQHNSSTMEKDIKLKEEMLRNMSVESVHYNAFLDLINREQNRWYKKTKTVLASPQHTGGCDEMHWFCYGIKCYYFTMDIRIWRECKQTCQNYSLSFLKIDDKDELKFLQDHIIRDNYWIGSSYNNKKKEWAWIDNSPFDLDFVARTLLRKTGYCLYFSMSGLHDDDCGKRYLCICEKGMDKFPAPLCSVKETSHSAV" misc_feature 249..602 /gene="Ly49s3" /note="Ly49-like protein, N-terminal region; Region: Ly49; pfam08391" /db_xref="CDD:429969" misc_feature 561..908 /gene="Ly49s3" /note="C-type lectin-like domain (CTLD) of...
AA_position 182
NM_153726.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus Ly49 inhibitory receptor 4 (Ly49i4), mRNA. (1588 bp)
receptor 4" /protein_id="NP_001009495.1" /db_xref="GeneID:494204" /db_xref="RGD:1549758" /translation="MTEQEVTYTTVRFHKSSVFQNKVRSEDTRSAKENGHRESSVPWKLIVIALGILCSVLMVTVAALVTNIFQYSNEKHELQKTQNRQHNCSTMEKDINLKEETLRNMSVESVHYNALLDLINREQNRWYKKTKTVLASPQHTGGCDEMHWFCYGIKCYYFTMDIRIWHECKQTCQNYSLSFLKIDDKDELKFLQDHIIRDNYWIGSSYNNKKKEWSWIDNSPFNLDFVARNSLRKTGYCMYFSMAGLHDDDCGKRYLCICEKGMDKIPAPLCSVKETSHSAV" misc_feature 440..796 /gene="Ly49i4" /note="Ly49-like protein, N-terminal region; Region: Ly49; pfam08391" /db_xref="CDD:429969" misc_feature 755..1102 /gene="Ly49i4" /note="C-type lectin-like domain (CTLD) of the...
AA_position 185
NM_001009495.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus Ly49 inhibitory receptor 3 (Ly49i3), mRNA. (1353 bp)
receptor 3" /protein_id="NP_001009499.1" /db_xref="GeneID:494208" /db_xref="RGD:1359730" /translation="MTEQEVTYTTVRFHKSSVFHNKVRSKETLSAKENGHRESSVPWKLIVIALAILCSVLMVTVAALVTNIFQYSNEKHELQKTQNCHHNCSTIENDIKLKEEMLRNISVESVHYNAFLDLINREQKRWYKKTKTVLASPQHTGRCDEMHWFCYGIKCYYFTMDIRIWRECKQICQNYSLSFLKIDDKDELKFLQDHIIRDNYWIGSSYNNKKKEWSWIDNSPFNLDFVARTLLRKTGYCLYFSMSGLHDDDCGKRYLCICEKGMDKIPAPLCSVKETSHSAV" misc_feature 206..562 /gene="Ly49i3" /note="Ly49-like protein, N-terminal region; Region: Ly49; pfam08391" /db_xref="CDD:429969" misc_feature 521..868 /gene="Ly49i3" /note="C-type lectin-like domain (CTLD) of the...
AA_position 185
NM_001009499.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus Ly49 inhibitory receptor 2 (Ly49i2), mRNA. (1516 bp)
inhibitory receptor 2" /protein_id="NP_690061.2" /db_xref="GeneID:260324" /db_xref="RGD:628669" /translation="MTEQEVTYTTVRFHKSSVFQNEVRSEETQSAKEIGHRESSVPWKLIVIALGILCSVLLVTVAVLVTNCLQYNHETHELQETQNSQHNCSTMENDIKLKEEMLRNMSIESTRYNALLDLINREQKRWYNKTKTVLAAPQHTGGCVEMHWLCYGIKCYYFIIDKRTWRKCIQTCQNYSLSFLKIHDKDELKFLQDHIIRDSYWIGLSYNNNKKEWSWIDNTTLNCDLVAMISLHKTGNCKYFSMTGLHDDDCGKRHLCICEKGIEKYPAPLCSVNERSQSAL" misc_feature 320..676 /gene="Ly49i2" /note="Ly49-like protein, N-terminal region; Region: Ly49; pfam08391" /db_xref="CDD:429969" misc_feature 635..982 /gene="Ly49i2" /note="C-type lectin-like domain (CTLD) of...
AA_position 185
NM_152848.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus small nuclear ribonucleoprotein polypeptide A (Snrpa), mRNA. (1170 bp)
alignment:Splign:2.1.0" misc_feature 71..73 /gene="Snrpa" /note="upstream in-frame stop codon" CDS 86..931 /gene="Snrpa" /codon_start=1 /product="U1 small nuclear ribonucleoprotein A" /protein_id="NP_001008304.1" /db_xref="GeneID:292729" /db_xref="RGD:1307416" /translation="MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAAAPVVGAVQPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK" misc_feature 104..370 /gene="Snrpa" /note...
AA_position 23
NM_001008303.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X16, mRNA. (947 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X11" /protein_id="XP_038946476.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQSIQVFP" misc_feature 465..>785 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" ORIGIN //...
AA_position 116
Synonym: RGD1308593
XM_039090548.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X15, mRNA. (1218 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X11" /protein_id="XP_038946475.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQSIQVFP" misc_feature 464..>784 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" ORIGIN //...
AA_position 116
Synonym: RGD1308593
XM_039090547.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus nucleophosmin 1 (Npm1), mRNA. (1307 bp)
numatrin; nucleolar protein NO38; nucleolar phosphoprotein B23; nucleophosmin (nucleolar phosphoprotein B23, numatrin)" /codon_start=1 /product="nucleophosmin" /protein_id="NP_037124.1" /db_xref="GeneID:25498" /db_xref="RGD:3192" /translation="MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIVEAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVEEDAESEDEDEEDVKLLGMSGKRSAPGGGNKVPQKKVKLDEDDDEDDEDDEDDEDDDDDDFDEEETEEKVPVKKSVRDTPAKNAQKSNQNGKDLKPSTPRSKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQEAIQDLWQWRKSL" misc_feature 94..648 /gene="Npm1" /gene_synonym="B23NP" /note...
AA_position 54
Synonym: B23NP
NM_012992.4 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus methyltransferase 14, N6-adenosine-methyltransferase subunit (Mettl14), mRNA. (2649 bp)
subunit METTL14; methyltransferase like 14" /codon_start=1 /product="N6-adenosine-methyltransferase non-catalytic subunit" /protein_id="NP_001386178.1" /db_xref="GeneID:295428" /db_xref="RGD:1304822" /translation="MDSRLQEIRERQKLRRQLLAQQLGAESADSIGAVLNSKDEQREIAETRETCRASYDTSAPNSKRKCLDEGETDEDKVEEYKDELEMQQEEENLPYEEEIYKDSSTFLKGTQSLNPHNDYCQHFVDTGHRPQNFIRDVGLADRFEEYPKLRELIRLKDELIAKSNTPPMYLQADIEAFDIRELTPKFDVILLEPPLEEYYRETGIAANEKCWTWDDIMKLEIDEIAAPRSFIFLWCGSGEGLDLGRVCLRKWGYRRCEDICWIKTNKNNPGKTKTLDPKAVFQRTKEHCLMGIKGTVKRSTDGDFIHANVDIDLIITEEPEIGNIEKPVEIFHIIEHFCLGRRRLHLFGRDSTIRPGWLTVGPTLTNSNYNAETYASYFSAPNSYLT...
AA_position 81
Synonym: RGD1304822
NM_001399249.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus GTPase, IMAP family member 7 (Gimap7), mRNA. (1297 bp)
synonym="Ian3" /codon_start=1 /product="GTPase, IMAP family member 7" /protein_id="NP_001019499.1" /db_xref="GeneID:500113" /db_xref="RGD:1565750" /translation="MAELDDDSLRIVLVGKTGSGKSATANTILGQKIFTSRIAPHAVTQTCQKASRRWKERDLLVVDTPGLFDTKVNLETTSIEISRCVLQSCPGPHAIILVLQLNRFTIEEQETVTRIKAIFGKAVMKYLIILFTRKDELEDQNLNDFIEDSDTNLKSIIKECDSRYLAINNKAEGAEGEMQVQELMGFVESLVRSNGGLYFSDPIYKYAEQRLKKQVGILREIYTDVLEKEIRIVEEECGLGKLSTQEGEEKIQAIREKYNLKIGNLREAAEKNIFTWIVEEVKKVLLKIWHFFS" misc_feature 135..737 /gene="Gimap7" /gene_synonym="Ian3" /note="AvrRpt2-Induced Gene 1 (AIG1); Region: AIG1; cd01852" /db_xref="CDD:206651"...
AA_position 134
Synonym: Ian3
NM_001024328.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus mitochondrial ribosomal protein L15 (Mrpl15), transcript variant 1, mRNA; nuclear gene for mitochondrial product. (1115 bp)
db_xref="RGD:1304796" /translation="MAGMAFGRGTSLDLLRSLPRVSLANLKPSLNSRKRERRPRDRRRGRKCGRGHKGERQRGTRPRLGFEGGQTPFYIRIPKYGFNEGHSFRHQYQPLSLRRLQYLIDLGRVDPTQPIDLTQLVNGRGVTIQPLKRDYGVQLVEEGADTFQAKVNIEVQMASELAIAAIEKNGGVVTTAFYDPRSLEILCKPVPFFLRGQPIPKRMLPPEALVPYYTDAKNRGYLADPAKFPEARLELAMKYGYVLPDVTKDELFRMLSTRKDPRQIFFGLAPGWIVNMADKKILKPTDENLLKYYSS" misc_feature 222..590 /gene="Mrpl15" /note="Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; Region: Ribosomal_L27A; pfam00828" /db_xref="CDD:425890" exon 174..328 /gene="Mrpl15" /inference="alignment:Splign:2.1.0" exon 329..494 /gene="Mrpl15" /inference="alignment:...
AA_position 248
NM_001399003.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus glia maturation factor, beta (Gmfb), mRNA. (1424 bp)
CDS 84..512 /gene="Gmfb" /note="GMF-beta; DNA for thyroid hormone receptor binding site (276bp)" /codon_start=1 /product="glia maturation factor beta" /protein_id="NP_112294.1" /db_xref="GeneID:81661" /db_xref="RGD:70910" /translation="MSESLVVCDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDKRLVVLDEELEGVSPDELKDELPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPLGCKPEQQMMYAGSKNKLVQTAELTKVFEIRNTEDLTEEWLREKLGFFH" misc_feature 87..89 /gene="Gmfb" /note="N-acetylserine. /evidence=ECO:0000269|Ref.4; propagated from UniProtKB/Swiss-Prot (Q63228.2); acetylation site" misc_feature 108..473 /gene="Gmfb" /note="ADF-homology domain of...
AA_position 58
NM_031032.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus glia maturation factor, beta (Gmfb), transcript variant X1, mRNA. (2111 bp)
introns" /db_xref="GeneID:81661" /db_xref="RGD:70910" CDS 789..1220 /gene="Gmfb" /codon_start=1 /product="glia maturation factor beta isoform X1" /protein_id="XP_006251876.1" /db_xref="GeneID:81661" /db_xref="RGD:70910" /translation="MSESLVVCDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDKRLVVLDEELEGVSPDELKDELPERQPRTFIVYSYKYQHDDGRVSYPLCFIFSSPLGCKPEQQMMYAGSKNKLVQTAELTKVFEIRNTEDLTEEWLREKLGFFH" misc_feature 813..1181 /gene="Gmfb" /note="ADF-homology domain of glia maturation factor beta and related proteins; Region: ADF_GMF-beta_like; cd11283" /db_xref="CDD:200439" ORIGIN //...
AA_position 58
XM_006251814.4 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X14, mRNA. (1177 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X10" /protein_id="XP_038946474.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGVLFPWRLPLELELHGQSIQVFP" misc_feature 466..>783 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" ORIGIN //...
AA_position 116
Synonym: RGD1308593
XM_039090546.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X13, mRNA. (1265 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X10" /protein_id="XP_038946473.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGVLFPWRLPLELELHGQSIQVFP" misc_feature 466..>783 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" ORIGIN //...
AA_position 116
Synonym: RGD1308593
XM_039090545.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X12, mRNA. (1129 bp)
gene="Efcab2" /gene_synonym="RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X9" /protein_id="XP_038946472.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGVLFPWRLPLELELHGEPFSQEEMEEMLSAAIDPESNTINYRDYITMMVIDEN" misc_feature 463..867 /gene="Efcab2" /gene_synonym="RGD1308593" /note="Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]; Region: FRQ1; COG5126" /db_xref="CDD:227455" ORIGIN //...
AA_position 90
Synonym: RGD1308593
XM_039090544.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus kinetochore-localized astrin/SPAG5 binding protein (Knstrn), mRNA. (1490 bp)
db_xref="RGD:1303240" /translation="MATHKAEAQETDFRTTGPPTDLEQCPFPPSSRKFPFESVAADSTEGWAVAAEHHLKRSGEDGGWEQPASGVEPSRPTTMASSKTVCDAQPHSMPSCGLSADTQTRATSKLPVKSKDAEMLRHLHTGGLEPDVTKVTKPRRENGQGKAAETASRRNIRSSYKPLSKQKPEEDLKDKNELLEAVNKQLHQKLTETQGELKDLTQKVELLEKFQDNCLAILESKGLNSGQETQESKQEPSTDPTDSMLLLETLKDELKLFNETAKKQMEELQALKVKLKLKEKERIQFLEQQTLGKDEASDFTIILEEMEQLLEM" misc_feature 70..165 /gene="Knstrn" /gene_synonym="C15orf23; SKAP; Traf4af1" /note="propagated from UniProtKB/Swiss-Prot (Q6AXN6.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 232..597 /gene="Knstrn" /gene_synonym="...
AA_position 251
Synonym: C15orf23; SKAP; Traf4af1
NM_001004264.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus ring finger protein 122 (Rnf122), transcript variant 1, mRNA. (1744 bp)
is encoded by transcript variant 1" /codon_start=1 /product="RING finger protein 122 isoform 1" /protein_id="NP_001386200.1" /db_xref="GeneID:502091" /db_xref="RGD:1561238" /translation="MHPFQWCNGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFISKLRNQAQSERYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIAGPTETSQSIGILLDELV" misc_feature 603..743 /gene="Rnf122" /gene_synonym="RGD1561238" /note="RING finger, H2 subclass, found in RING finger protein 122 (RNF122) and similar proteins; Region: RING-H2_RNF122; cd16676" /db_xref="CDD:438338" misc_feature order...
AA_position 103
Synonym: RGD1561238
NM_001399271.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X11, mRNA. (4619 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X8" /protein_id="XP_038946471.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGSNIWIVANELQTDQGVSNDDRWGLFEGNG" misc_feature 467..>784 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" ORIGIN //...
AA_position 116
Synonym: RGD1308593
XM_039090543.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus B-cell receptor-associated protein 31 (Bcap31), transcript variant X4, mRNA. (1084 bp)
gene_synonym="Bap31" /codon_start=1 /product="B-cell receptor-associated protein 31 isoform X2" /protein_id="XP_038955458.1" /db_xref="GeneID:293852" /db_xref="RGD:1302944" /translation="MEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLVTLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGTAEDGGKLDVGSPEMKLEENKILKTDLKKLKDELASTKKKLEKAENEALAMQKQSEGLTKEYDRLLEEHAKLQASVRGPSDKKEE" misc_feature <233..373 /gene="Bcap31" /gene_synonym="Bap31" /note="B-cell receptor-associated protein 31-like; Region: Bap31; cl02219" /db_xref="CDD:445710" misc_feature <392..613 /gene="Bcap31" /gene_synonym="Bap31" /note="Alanyl-tRNA synthetase...
AA_position 103
Synonym: Bap31
XM_039099530.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus calreticulin (Calr), mRNA. (1865 bp)
GGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDAAKPEDWDERAKIDDPTDSKPEDWDKPEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEYSPDANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMKDKQDEEQRLKEEEEDKKRKEEEEAEDKEDEDDRDEDEDEEDEKEEDEEDATGQAKDEL" sig_peptide 64..114 /gene="Calr" /inference="COORDINATES: ab initio prediction:SignalP:4.0" mat_peptide 115..1311 /gene="Calr" /product="Calreticulin. /id=PRO_4177" /note="propagated from UniProtKB/Swiss-Prot (P18418.1)" misc_feature 115..654 /gene="Calr" /note="propagated from UniProtKB/Swiss-...
AA_position 413
NM_022399.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus retinaldehyde binding protein 1 (Rlbp1), mRNA. (2289 bp)
codon" exon 470..498 /gene="Rlbp1" /inference="alignment:Splign:2.1.0" CDS 487..1440 /gene="Rlbp1" /codon_start=1 /product="retinaldehyde-binding protein 1" /protein_id="NP_001099744.1" /db_xref="GeneID:293049" /db_xref="RGD:1309649" /translation="MSEGVGTFRMVPEEEQELRAQLEQLTTKDHGPVFGPCSQLPRHTLQKAKDELNEREETRDEAVRELQELVQAQAASGEELAVAVAERVQARDSAFLLRFIRARKFDVGRAYELLKGYVNFRLQYPELFDSLSMEALRCTIEAGYPGVLSSRDKYGRVVMLFNIENWHCEEVTFDEILQAYCFILEKLLENEETQINGFCIVENFKGFTMQQAAGLRPSDLKKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKNKLLQRVFVHGDDLDGFFQEIDENILPADFGGTLPKYDGKVVAEQLFGPRVEVENTAL" misc_feature 664..837 /gene="...
AA_position 49
NM_001106274.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X10, mRNA. (969 bp)
Efcab2" /gene_synonym="RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X7" /protein_id="XP_038946470.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAWRRVRARNSLSPLSQTLQIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGVLFPWRLPLELELHGEPFSQEEMEEMLSAAIDPESNTINYRDYITMMVIDEN" misc_feature 282..695 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" ORIGIN //...
AA_position 96
Synonym: RGD1308593
XM_039090542.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X9, mRNA. (1440 bp)
Efcab2" /gene_synonym="RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X7" /protein_id="XP_038946469.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAWRRVRARNSLSPLSQTLQIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGVLFPWRLPLELELHGEPFSQEEMEEMLSAAIDPESNTINYRDYITMMVIDEN" misc_feature 753..1166 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" ORIGIN //...
AA_position 96
Synonym: RGD1308593
XM_039090541.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

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Redirect URI : http://ggrna.dbcls.jp/rn/aa%3aKDEL
lang : en | div : | spe : rn | query_string : aa:KDEL | format : html | download :

0.000 | 0.000 | search_start;
0.084 | 0.084 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(aa:KDEL)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.123 | 0.039 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(aa:KDEL)?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.128 | 0.006 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]