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2025-04-18 08:38:38, GGRNA : RefSeq release 229 (Mar, 2025)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Rattus norvegicus methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit (Mettl14), mRNA. (2649 bp)
N6-adenosine-methyltransferase subunit" /codon_start=1 /product="N6-adenosine-methyltransferase non-catalytic subunit" /protein_id="NP_001386178.1" /db_xref="GeneID:295428" /db_xref="RGD:1304822" /translation="MDSRLQEIRERQKLRRQLLAQQLGAESADSIGAVLNSKDEQREIAETRETCRASYDTSAPNSKRKCLDEGETDEDKVEEYKDELEMQQEEENLPYEEEIYKDSSTFLKGTQSLNPHNDYCQHFVDTGHRPQNFIRDVGLADRFEEYPKLRELIRLKDELIAKSNTPPMYLQADIEAFDIRELTPKFDVILLEPPLEEYYRETGIAANEKCWTWDDIMKLEIDEIAAPRSFIFLWCGSGEGLDLGRVCLRKWGYRRCEDICWIKTNKNNPGKTKTLDPKAVFQRTKEHCLMGIKGTVKRSTDGDFIHANVDIDLIITEEPEIGNIEKPVEIFHIIEHFCLGRRRLHLFGRDSTIRPGWLTVGPTLTNSNYNAETYASYFSAPNSYLTGCTE...
AA_position 81
Synonym: RGD1304822
NM_001399249.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus C-type lectin domain family 12, member A (Clec12a), mRNA. (1441 bp)
domain family 12 member A" /protein_id="NP_001128188.1" /db_xref="GeneID:680338" /db_xref="RGD:1592991" /translation="MSEEIVYADLKFQDSDKKEESQKSDKCGRKVPSAGSYSQHKTVLILILLCLLLFIGVVALGCIFYTTLETEMIKSNQLQRVKEELQENVSLQLMHNLNNSKKIKTLSAMLQNIATQLCQELSKKEPGHKCKPCPKASDWYKDSCYSRFQKYATWQESVEFCSARNASLLKVKNKDELEFIKSKELYNYWLALPPSKMYRSYELLSEKMFLSEGFKRSTYDITKMSCGFIRGEYVYYTNCDEEKYTMCEETASKVQVESVLSDLPEGSIL" misc_feature 598..945 /gene="Clec12a" /note="C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs); Region: CLECT_NK_receptors_like; cd03593" /db_xref="CDD:153063" misc_...
AA_position 174
NM_001134716.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus Ly49 stimulatory receptor 5 (Ly49s5), mRNA. (1443 bp)
stimulatory receptor 5" /protein_id="NP_001012767.1" /db_xref="GeneID:503662" /db_xref="RGD:1359728" /translation="MSEQEVPCSTVRFKKSSGLRYQVRPKETQRPREAGCRVPWQLTVIAIGILLSLRLVAVAMLVTNIFQFSHEKHELQKTRNRHPNCSTMEKDINLKEETLRTMSVECTSSNALLDLFNREQNRWYKKTKTVLASPQHPARCVEMHWFCHGIKCYYFIMDIRTWHECKQTCQNYNLSFLKIDDKDELKFLQDHIIRDSYWVGLSYNNIKKEWSWIDSSPLNCDLLACKPLQKTGYCIYFSMTGLHYDDCGKRHLCICEKGMDKIPAPLCSVKERSQSAV" misc_feature 282..635 /gene="Ly49s5" /note="Ly49-like protein, N-terminal region; Region: Ly49; pfam08391" /db_xref="CDD:462461" misc_feature 594..941 /gene="Ly49s5" /note="C-type lectin-like domain (CTLD)...
AA_position 182
NM_001012749.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus Ly-49 stimulatory receptor 3 (Ly49s3), mRNA. (1420 bp)
stimulatory receptor 3" /protein_id="NP_714948.1" /db_xref="GeneID:266768" /db_xref="RGD:628683" /translation="MSKQDVPCSTVRFKKSSGLQYQVRPEETQRPREAGWRVPWQLTVIATGILLSLRLVAVAMLVTNIFQYSNENHELQKTHKRQHNSSTMEKDIKLKEEMLRNMSVESVHYNAFLDLINREQNRWYKKTKTVLASPQHTGGCDEMHWFCYGIKCYYFTMDIRIWRECKQTCQNYSLSFLKIDDKDELKFLQDHIIRDNYWIGSSYNNKKKEWAWIDNSPFDLDFVARTLLRKTGYCLYFSMSGLHDDDCGKRYLCICEKGMDKFPAPLCSVKETSHSAV" misc_feature 249..602 /gene="Ly49s3" /note="Ly49-like protein, N-terminal region; Region: Ly49; pfam08391" /db_xref="CDD:462461" misc_feature 561..908 /gene="Ly49s3" /note="C-type lectin-like domain (CTLD) of...
AA_position 182
NM_153726.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), mRNA. (2604 bp)
hand calcium-binding domain-containing protein 2-like" /codon_start=1 /product="dynein regulatory complex protein 8" /protein_id="NP_001099447.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGEPFSQEEMEEMLSAAIDPESNTINYRDYITMMVIDEN" misc_feature 289..627 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" exon 257..336 /gene="Efcab2" /gene_synonym="RGD1308593" /inference="alignment:Splign:2.1.0" exon 337..416 /gene="...
AA_position 90
Synonym: RGD1308593
NM_001105977.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus glia maturation factor, beta (Gmfb), mRNA. (1424 bp)
CDS 84..512 /gene="Gmfb" /note="GMF-beta; DNA for thyroid hormone receptor binding site (276bp)" /codon_start=1 /product="glia maturation factor beta" /protein_id="NP_112294.1" /db_xref="GeneID:81661" /db_xref="RGD:70910" /translation="MSESLVVCDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDKRLVVLDEELEGVSPDELKDELPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPLGCKPEQQMMYAGSKNKLVQTAELTKVFEIRNTEDLTEEWLREKLGFFH" misc_feature 87..89 /gene="Gmfb" /note="N-acetylserine. /evidence=ECO:0000269|Ref.4; propagated from UniProtKB/Swiss-Prot (Q63228.2); acetylation site" misc_feature 108..473 /gene="Gmfb" /note="ADF-homology domain of...
AA_position 58
NM_031032.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus glycosylation dependent cell adhesion molecule 1 (Glycam1), mRNA. (584 bp)
gene="Glycam1" /note="SGP50; glyCAM-1; sulfated 50 kDa glycoprotein; endothelial ligand FOR L-selectin" /codon_start=1 /product="glycosylation-dependent cell adhesion molecule 1 precursor" /protein_id="NP_036926.2" /db_xref="GeneID:25258" /db_xref="RGD:2712" /translation="MKFFTVLLFASLAATSLAAVPGSKDELHLRTQPTDAIPASQFTPSSHISKESTSSKDLSKESSIFNEELVSEDNVGTESTKPQSQEAQDGLRSGSSQQEETTSAATSEGKLTMLSQAVQKELGKVIEGFISGVEDIISGASGTVRP" sig_peptide 22..78 /gene="Glycam1" /note="/evidence=ECO:0000255; propagated from UniProtKB/Swiss-Prot (Q04807.1)" mat_peptide 79..459 /gene="Glycam1" /product="Glycosylation-...
AA_position 24
NM_012794.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus ring finger protein 122 (Rnf122), transcript variant 1, mRNA. (1744 bp)
is encoded by transcript variant 1" /codon_start=1 /product="RING finger protein 122 isoform 1" /protein_id="NP_001386200.1" /db_xref="GeneID:502091" /db_xref="RGD:1561238" /translation="MHPFQWCNGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFISKLRNQAQSERYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIAGPTETSQSIGILLDELV" misc_feature 603..743 /gene="Rnf122" /gene_synonym="RGD1561238" /note="RING finger, H2 subclass, found in RING finger protein 122 (RNF122) and similar proteins; Region: RING-H2_RNF122; cd16676" /db_xref="CDD:438338" misc_feature order...
AA_position 103
Synonym: RGD1561238
NM_001399271.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus trafficking protein particle complex subunit 6B (Trappc6b), mRNA. (1165 bp)
gene_synonym="RGD1309325" /note="trafficking protein particle complex 6B" /codon_start=1 /product="trafficking protein particle complex subunit 6B" /protein_id="NP_001100203.1" /db_xref="GeneID:299075" /db_xref="RGD:1309325" /translation="MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQKL" misc_feature 185..646 /gene="Trappc6b" /gene_synonym="RGD1309325" /note="Trs33 subunit of the TRAPP complex; Region: TRAPPC6A_Trs33; cd14944" /db_xref="CDD:271347" misc_feature order...
AA_position 59
Synonym: RGD1309325
NM_001106733.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus twinfilin actin-binding protein 2 (Twf2), mRNA. (1582 bp)
in-frame stop codon" CDS 153..1202 /gene="Twf2" /codon_start=1 /product="twinfilin-2" /protein_id="NP_001128710.1" /db_xref="GeneID:684352" /db_xref="RGD:1591460" /translation="MAHQTGIHATEELKEFFAKARAGSIRLIKVIIEDEQLVLGASQEPVGRWDQDYDRAVLPLLDAQEPCYLLFRLDSQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDELFGTVKDDLSLAGYQKHLSSCAAPAPLTSAERELQQIRINEVKTEISVESKHQTLQGLAFPLQPEAQRALQQLKQKTVNYIQLKLDLERETIELVHTEPTNVAQLPSRVPRDAARYHFFLYKHTHEGDSLESVVFIYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFQLEIAKKIEIGDGAELTAEFLYDEVHPKQHAFKQAFAKPKGPGGKRGHKRLIRGPGENGEDS" misc_feature 162..578 /gene="Twf2" /note="N-terminal ADF domain of...
AA_position 118
NM_001135238.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus TPD52 like 1 (Tpd52l1), mRNA. (1272 bp)
exon 1..122 /gene="Tpd52l1" /inference="alignment:Splign:2.1.0" CDS 104..595 /gene="Tpd52l1" /note="tumor protein D52-like 1" /codon_start=1 /product="tumor protein D53" /protein_id="NP_001037760.1" /db_xref="GeneID:689256" /db_xref="RGD:1594796" /translation="MEAQAQGLLETEPLQGRDGDAIGSADLSSMLSEEEKDELKAELVQLEEEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSRSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTAISRKFGDMRYSIRHSISMPAMRNSPTFKSFEERVETTVTSLKV" misc_feature 194..556 /gene="Tpd52l1" /note="Tumour protein D52 family; Region: TPD52; pfam04201" /db_xref="CDD:461225" exon 123..238 /gene="Tpd52l1" /inference="alignment:...
AA_position 36
NM_001044295.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus microfibril associated protein 5 (Mfap5), mRNA. (881 bp)
codon_start=1 /product="microfibrillar-associated protein 5 precursor" /protein_id="NP_001102114.1" /db_xref="GeneID:362429" /db_xref="RGD:1307919" /translation="MLVFGQKALLLVVALSIPSDWLPLGVSGQRGDDVPETFTDDPNLVNDPSTDDTVLADITPSTDDLASAGDKNTTAECRDEKFACTRLYSVHRPVRQCVHQACFTSLRRMYIINNEICSRLVCKEHEAMKDELCRQMAGLPPRRLRRSNYFRLPPCENMNLQRPDGP" sig_peptide 148..231 /gene="Mfap5" /inference="COORDINATES: ab initio prediction:SignalP:6.0" misc_feature 151..555 /gene="Mfap5" /note="Microfibril-associated glycoprotein (MAGP); Region: MAGP; pfam05507" /db_xref="CDD:461667" exon 206..241 /gene="Mfap5" /inference="...
AA_position 129
NM_001108644.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus stem-loop binding protein like (Slbpl), mRNA. (941 bp)
uncharacterized protein LOC100363294" /protein_id="NP_001257345.2" /db_xref="GeneID:100363294" /db_xref="RGD:2323347" /translation="MSLSSRMEMVSVGVTTEPCHARWEVETDEVVLRRRQKQIDYGKCTPGYQSFLQQVPRAQRQPGFHPQTPNKNRRYSRRSWDAQIRQWRRALHTWDPPSQPLHDRQAEGKAAGNFLRPVDTAPLDDLLDNWPQDPESSENWDRGEKEAQFAYLKVPASCPPQLKDELLHH" misc_feature 344..553 /gene="Slbpl" /gene_synonym="SLBP2" /note="Histone RNA hairpin-binding protein RNA-binding domain; Region: SLBP_RNA_bind; pfam15247" /db_xref="CDD:464587" exon 331..435 /gene="Slbpl" /gene_synonym="SLBP2" /inference="alignment:Splign:2.1.0" exon 436..588 /gene="Slbpl" /gene_...
AA_position 163
Synonym: SLBP2
NM_001270416.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus ribosomal protein S5 (Rps5), transcript variant 2, mRNA. (666 bp)
small ribosomal subunit protein uS7 isoform 2" /protein_id="NP_001264173.1" /db_xref="GeneID:25538" /db_xref="RGD:3601" /translation="MTEWETATPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQGSSNSYAIKKKDELERVAKSNR" misc_feature 150..611 /gene="Rps5" /note="Eukaryota homolog of Ribosomal Protein S7; Region: uS7_Eukaryote; cd14867" /db_xref="CDD:271246" misc_feature order(150..152,237..245,249..260,357..359,369..371) /gene="Rps5" /note="S9 interface [polypeptide binding]; other site" /db_xref="CDD...
AA_position 160
NM_001277244.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus nucleophosmin 1 (Npm1), transcript variant 3, mRNA. (775 bp)
protein NO38; nucleolar phosphoprotein B23; nucleophosmin (nucleolar phosphoprotein B23, numatrin)" /codon_start=1 /product="nucleophosmin isoform 3" /protein_id="NP_001417038.1" /db_xref="GeneID:25498" /db_xref="RGD:3192" /translation="MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIVEAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVEEDAESEDEDEEDVKLLGMSGKRSAPGGGNKVPQKKVKLDEDDDEDDEDDEDDEE" misc_feature 94..444 /gene="Npm1" /gene_synonym="B23NP" /note="propagated from UniProtKB/Swiss-Prot (P13084.1); Region: Necessary for interaction with APEX1. /evidence=ECO:0000250" misc_...
AA_position 54
Synonym: B23NP
NM_001430109.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus transmembrane protein 40 (Tmem40), transcript variant 1, mRNA. (1123 bp)
gene_synonym="RGD1306976" /note="isoform 1 is encoded by transcript variant 1" /codon_start=1 /product="transmembrane protein 40 isoform 1" /protein_id="NP_001399832.1" /db_xref="GeneID:680858" /db_xref="RGD:1587025" /translation="MEASGSSSQSPNSSAVHRETEDLNHSSDEDKHSRGPRKHRRKSHRDSSPGADHGELEVLKDELQLYGGAAGEMVLAGESGLRRRGSGSAEGEVEASQLNRLNIKKDDEFFHFVLLCFAIGALLVCYHYYSDWFMSLGVGLLTFASLETIGIYFGLVYRIHSVLQGFIPLLQKFRLPGFRRTN" misc_feature 228..587 /gene="Tmem40" /gene_synonym="RGD1306976" /note="Transmembrane protein 40 family; Region: TMEM40; pfam15817" /db_xref="CDD:464892" exon 118..192 /gene="Tmem40" /...
AA_position 60
Synonym: RGD1306976
NM_001412903.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus ring finger protein 122 (Rnf122), transcript variant 2, mRNA. (1514 bp)
variant 2" /codon_start=1 /product="RING finger protein 122 isoform 2" /protein_id="NP_001386201.1" /db_xref="GeneID:502091" /db_xref="RGD:1561238" /translation="MVNVERILALFQHQIFLWQDEGRRLLAVEGGPVGPEGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFISKLRNQAQSERYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIAGPTETSQSIGILLDELV" misc_feature 373..513 /gene="Rnf122" /gene_synonym="RGD1561238" /note="RING finger, H2 subclass, found in RING finger protein 122 (RNF122) and similar proteins; Region: RING-H2_RNF122; cd16676" /db_xref="CDD:438338" misc_feature order...
AA_position 131
Synonym: RGD1561238
NM_001399272.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus similar to human chromosome 5 open reading frame 24 (C17h5orf24), mRNA. (4397 bp)
Splign:2.1.0" CDS 230..799 /gene="C17h5orf24" /gene_synonym="RGD1566359" /codon_start=1 /product="UPF0461 protein C5orf24 homolog" /protein_id="NP_001387699.1" /db_xref="GeneID:498701" /db_xref="RGD:1566359" /translation="MMHPVAGGNPAFCGPGKPPCLSDDAAMRAADQFDLYSSQQSKYSHTVSHKPMLCQRQDPLNEAHLQPTSGRNTEIKDELKKKKNLNRSGKRGRPSGTTKSAGYRTSTGRPLGTTKAAGFKTSPGRPLGTTKAAGYKVSPGRPPGSIKALSRLADLGYGCGTAAFPYPMMHSRVVHGVQETSGEVKPPSE" misc_feature 230..796 /gene="C17h5orf24" /gene_synonym="RGD1566359" /note="Family of unknown function (DUF5568); Region: DUF5568; pfam17724" /db_xref="CDD:465471" ORIGIN // REFERENCE 1...
AA_position 76
Synonym: RGD1566359
NM_001400770.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus ribosomal protein L9 (Rpl9), mRNA. (723 bp)
L9" /codon_start=1 /product="large ribosomal subunit protein uL6" /protein_id="NP_001007599.3" /db_xref="GeneID:29257" /db_xref="RGD:62049" /translation="MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQPDE" misc_feature 25..591 /gene="Rpl9" /note="60S ribosomal protein L6; Provisional; Region: PTZ00027" /db_xref="CDD:240234" misc_feature 385..387 /gene="Rpl9" /note="N6-acetyllysine. /evidence=ECO:0000250|UniProtKB:P32969; propagated from UniProtKB/Swiss-...
AA_position 141
NM_001007598.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus transmembrane protein 40 (Tmem40), transcript variant 3, mRNA. (1183 bp)
Tmem40" /gene_synonym="RGD1306976" /note="isoform 3 is encoded by transcript variant 3" /codon_start=1 /product="transmembrane protein 40 isoform 3" /protein_id="NP_001178502.1" /db_xref="GeneID:680858" /db_xref="RGD:1587025" /translation="MEASGSSSQSPNSSAVHRETEDLNHPETEFHKQHGKARERYERDKGADHGELEVLKDELQLYGGAAGEMVLAGESGLRRRGSGSAEGEVEASQLNRLNIKKDDEFFHFVLLCFAIGALLVCYHYYSDWFMSLGVGLLTFASLETIGIYFGLVYRIHSVLQGFIPLLQKFRLPGFRRTN" misc_feature 288..647 /gene="Tmem40" /gene_synonym="RGD1306976" /note="Transmembrane protein 40 family; Region: TMEM40; pfam15817" /db_xref="CDD:464892" exon 118..252 /gene="...
AA_position 80
Synonym: RGD1306976
NM_001191573.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus ribosomal protein S5 (Rps5), transcript variant 1, mRNA. (765 bp)
uS7 isoform 1" /protein_id="NP_001264172.1" /db_xref="GeneID:25538" /db_xref="RGD:3601" /translation="MTEWETATPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR" misc_feature 99..101 /gene="Rps5" /note="N-acetylmethionine. /evidence=ECO:0000250|UniProtKB:P46782; propagated from UniProtKB/Swiss-Prot (P24050.3); acetylation site" misc_feature 102..104 /gene="Rps5" /note="N-acetylthreonine, in 40S ribosomal protein S5, N-terminally processed. /evidence=...
AA_position 193
NM_001277243.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus chromatin modifying protein 4B-like 1 (Chmp4bl1), mRNA. (1050 bp)
chromatin modifying protein 4B-like 1" /protein_id="NP_001263385.1" /db_xref="GeneID:679886" /db_xref="RGD:1583604" /translation="MSVFGKLFGAGWGKAGKGDPTPQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEQTSTAISKPVGFGEEFDKDELMAELEELEQEELDKNLLEISGPETVPLPNVPSVALPSKPAKKKEEEDDDMKELENWAGSM" misc_feature 170..694 /gene="Chmp4bl1" /note="Region: Snf7; pfam03357" /db_xref="CDD:460896" ORIGIN // REFERENCE 1 (bases 1 to 1050) AUTHORS Chassefeyre,R., Martinez-Hernandez,J., Bertaso,F., Bouquier,N., Blot,B., Laporte,M., Fraboulet,S.,...
AA_position 161
NM_001276456.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X34, mRNA. (1999 bp)
gene="Efcab2" /gene_synonym="RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X32" /protein_id="XP_063128233.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQSIQVFP" polyA_site 1999 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 90
Synonym: RGD1308593
XM_063272163.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus transmembrane protein 40 (Tmem40), transcript variant 2, mRNA. (1258 bp)
RGD1306976" /note="isoform 2 is encoded by transcript variant 2" /codon_start=1 /product="transmembrane protein 40 isoform 2" /protein_id="NP_001399833.1" /db_xref="GeneID:680858" /db_xref="RGD:1587025" /translation="MEASGSSSQSPNSSAVHRETEDLNHPETEFHKQHGKARERYERDKDSSDEDKHSRGPRKHRRKSHRDSSPGADHGELEVLKDELQLYGGAAGEMVLAGESGLRRRGSGSAEGEVEASQLNRLNIKKDDEFFHFVLLCFAIGALLVCYHYYSDWFMSLGVGLLTFASLETIGIYFGLVYRIHSVLQGFIPLLQKFRLPGFRRTN" misc_feature 363..722 /gene="Tmem40" /gene_synonym="RGD1306976" /note="Transmembrane protein 40 family; Region: TMEM40; pfam15817" /db_xref="CDD:464892" exon 118..252 /gene="...
AA_position 105
Synonym: RGD1306976
NM_001412904.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus nuclear factor I/C (Nfic), mRNA. (1565 bp)
db_xref="RGD:62016" CDS 1..1320 /gene="Nfic" /note="olfactory epithelium nuclear factor I-C" /codon_start=1 /product="nuclear factor 1 C-type" /protein_id="NP_113755.1" /db_xref="GeneID:29228" /db_xref="RGD:62016" /translation="MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKAEVKQKWASRLLAKLRKDIRPECREDFVLAVTGKKAPGCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAACAHPVLCVQPHHIGVAVKELDLYLAYFVRERDAEQSSSPRTGVGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTGPNFSLGELQGHLAYDLNPASAGMRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYTSPNSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVHSGIARSPHPSSA...
AA_position 58
NM_031567.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus glia maturation factor, beta (Gmfb), transcript variant X2, mRNA. (1129 bp)
includes similarity to: 3 long SRA reads" /db_xref="GeneID:81661" /db_xref="RGD:70910" CDS 511..864 /gene="Gmfb" /codon_start=1 /product="glia maturation factor beta isoform X2" /protein_id="XP_063130762.1" /db_xref="GeneID:81661" /db_xref="RGD:70910" /translation="MKIDKDKRLVVLDEELEGVSPDELKDELPERQPRTFIVYSYKYQHDDGRVSYPLCFIFSSPLGCKPEQQMMYAGSKNKLVQTAELTKVLSRSDVLIDFPSQYSGRAKQPDAQVFSCS" polyA_site 1129 /gene="Gmfb" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 25
XM_063274692.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus trafficking protein particle complex subunit 6B (Trappc6b), transcript variant X2, mRNA. (1113 bp)
CDS 222..587 /gene="Trappc6b" /gene_synonym="RGD1309325" /codon_start=1 /product="trafficking protein particle complex subunit 6B isoform X2" /protein_id="XP_038967906.1" /db_xref="GeneID:299075" /db_xref="RGD:1309325" /translation="MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLSAGKQYLEHASKANSR" misc_feature 228..>572 /gene="Trappc6b" /gene_synonym="RGD1309325" /note="Trs33 subunit of the TRAPP complex; Region: TRAPPC6A_Trs33; cd14944" /db_xref="CDD:271347" misc_feature order(234..236,243..245,255..257,528..533,561..563) /gene="...
AA_position 59
Synonym: RGD1309325
XM_039111978.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus B-cell receptor-associated protein 31 (Bcap31), mRNA. (1231 bp)
protein 31" /protein_id="NP_001004224.1" /db_xref="GeneID:293852" /db_xref="RGD:1302944" /translation="MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFVVLIVILVLLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLVTLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGTAEDGGKLDVGSPEMKLEENKILKTDLKKLKDELASTKKKLEKAENEALAMQKQSEGLTKEYDRLLEEHAKLQASVRGPSDKKEE" misc_feature 89..496 /gene="Bcap31" /gene_synonym="Bap31" /note="Bap31/Bap29 transmembrane region; Region: Bap31; pfam05529" /db_xref="CDD:461673" misc_feature 662..823 /gene="Bcap31" /gene_synonym="Bap31" /note="Bap31/Bap29 cytoplasmic coiled-coil...
AA_position 191
Synonym: Bap31
NM_001004224.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus TPD52 like 1 (Tpd52l1), transcript variant X6, mRNA. (1205 bp)
to: 6 ESTs, 80 long SRA reads" /db_xref="GeneID:689256" /db_xref="RGD:1594796" CDS 204..599 /gene="Tpd52l1" /codon_start=1 /product="tumor protein D53 isoform X6" /protein_id="XP_063130668.1" /db_xref="GeneID:689256" /db_xref="RGD:1594796" /translation="MEAQAQGLLETEPLQGRDGDAIGSADLSSMLSEEEKDELKAELVQLEEEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSRSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTAISRKFGDMRRK" polyA_site 1205 /gene="Tpd52l1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 36
XM_063274598.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X31, mRNA. (1919 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X29" /protein_id="XP_063128230.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MTPLGPKNAGLSSWGVGRRPPRVEGLPPPRPPRAARRVCDGISQATGSAPRWRRKRTRRVQVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQSIQVFP" polyA_site 1919 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 114
Synonym: RGD1308593
XM_063272160.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X29, mRNA. (2077 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X27" /protein_id="XP_038946475.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQSIQVFP" misc_feature 1319..>1639 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" polyA_site 2077 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 116
Synonym: RGD1308593
XM_039090547.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus nucleophosmin 1 (Npm1), transcript variant 2, mRNA. (1182 bp)
protein NO38; nucleolar phosphoprotein B23; nucleophosmin (nucleolar phosphoprotein B23, numatrin)" /codon_start=1 /product="nucleophosmin isoform 2" /protein_id="NP_001417037.1" /db_xref="GeneID:25498" /db_xref="RGD:3192" /translation="MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIVEAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVEEDAESEDEDEEDVKLLGMSGKRSAPGGGNKVPQKKVKLDEDDDEDDEDDEDDEDDDDDDFDEEETEEKVPVKKSVRDTPAKNAQKSNQNGKDLKPSTPRSKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKAH" misc_feature 94..648 /gene="Npm1" /gene_synonym="B23NP" /note="propagated from UniProtKB/Swiss-Prot...
AA_position 54
Synonym: B23NP
NM_001430108.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus solute carrier family 25 member 2 (Slc25a2), mRNA; nuclear gene for mitochondrial product. (3382 bp)
mitochondrial ornithine transporter 2" /protein_id="NP_001099622.1" /db_xref="GeneID:291640" /db_xref="RGD:1310667" /translation="MQTFPYMYKGLADCFLKTYNQVGVHGLYRGTSPALLAYVAQGSVLFLCYGFCQQFVRKVARVEQSAELNDFETATAGSLASAFAALVLCPTELVKCRLQTMHEMRVAGKTKHSHNTIWSMVKSIFMKDGPLGFYRGLSTTLAQEIPGYFFYFGGYEISRSFFASGGSKDELGPVPLMLSGSFAGVCLWLIIFPVDCIKSRIQVLSMFGKPAGLIKTFINVVRNEGILALYSGLKATLIRAIPSNAALFVVYEYSRKMMMNVVEEY" misc_feature <243..416 /gene="Slc25a2" /note="Mitochondrial carrier protein; Region: Mito_carr; pfam00153" /db_xref="CDD:395101" misc_feature 441..728 /gene="Slc25a2" /note="Mitochondrial carrier protein...
AA_position 168
NM_001106152.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus MPN domain containing (Mpnd), mRNA. (1566 bp)
gene="Mpnd" /inference="alignment:Splign:2.1.0" CDS 22..1485 /gene="Mpnd" /codon_start=1 /product="MPN domain-containing protein" /protein_id="NP_001078875.1" /db_xref="GeneID:681944" /db_xref="RGD:1589335" /translation="MAAPESLSSTATAEEAPEEDEDEAETEDPERGTGSGGRSGSLGGSGGSTAGPGLALGGALTRRAVTLRVLLKDELLEPGEGVLSIYYLGRKFIGDLKLDGRIVWQENGQVFNSPSAWATHCKKLVNPAKKSGCGWASVKYKGQKLDKYKAAWLRRHQLHMPVAAADESPTSEGEEEELLLEEEEEDVLAGVSSEYKGHRPPGKGSLEPEATPPGKRVDKVRVPVRYCMLGSRDSARNPHTLVEVTSFAAINKFQPFNVAVSSNVLFLLDFHCHLTRSEVVGYLGGRWDINNQMLTVLRAFPCRSRLGDPDTAATVEEEIHQVLFLRGLSLVGWYHSHPHSPAAPSLQDIDAQMEYQLRLQGSNNGFQPCLALLCSPYYS...
AA_position 72
NM_001085406.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus hematopoietically expressed homeobox (Hhex), mRNA. (1602 bp)
HHEX" /protein_id="NP_077361.1" /db_xref="GeneID:79237" /db_xref="RGD:619932" /translation="MQFPHPGPAAAPAVGVPLYAPTPLLQPAHPTPFYIDDILGRGPAAPTPTPTLPSPNSSFTSLVSSYRTPVYEPTPVHPAFSHHPAAALAAAYGPGGFGGPLYPFPRTVNDYTHALLRHDPLGKPLLWNPFLQRPLHKRKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRLKQENPQSNKKDELDSLDTSCDQGQDLPSEQNKGASLDSSQCSPSPASPEDPESEISEDSDQEVDIEGDKGYFNAG" misc_feature 420..596 /gene="Hhex" /gene_synonym="Hex" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" exon 376..554 /gene="Hhex" /gene_synonym="Hex" /inference="alignment:Splign:2.1.0" exon 555..605 /gene="Hhex" /gene_...
AA_position 206
Synonym: Hex
NM_024385.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X28, mRNA. (1964 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X26" /protein_id="XP_063128229.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MTPLGPKNAGLSSWGVGRRPPRVEGLPPPRPPRAARRVCDGISQATGSAPRWRRKRTRRVQVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGVLFPWRLPLELELHGQSIQVFP" polyA_site 1964 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 114
Synonym: RGD1308593
XM_063272159.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X27, mRNA. (1924 bp)
gene_synonym="RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X25" /protein_id="XP_063128228.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MGSPRRRAPHQDGGGKGPGEYREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGEPFSQEEMEEMLSAAIDPESNTINYRDYITMMVIDEN" polyA_site 1924 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 99
Synonym: RGD1308593
XM_063272158.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus calreticulin 4 (Calr4), transcript variant 5, mRNA. (1264 bp)
RGD:1591090" /translation="MLRLGKNRPGQMPEPKGPGPAGLSRAQVQTDGEDVSGGCRGPDICGFGNNRLQVILYHRGKYHENNKTLKCRDWQDSEFIPDPDAKKPDDWNEAMDGVWEGPLIPNVKYKGEWKPRIIDNPNYQGEWIHPEIDNPKYRPDPTICHYHNISVLGLDLWQVKSGSIFDNFLLTNDEEFAEEVGNMTWGLRKDVEQQWRELYEEMEKQKEAEEAKKKREKQRAKQEDIWGLDEEDEEENEEDAEEEAEERPKQEGSGERASVDQKEAHFEQKDEL" misc_feature 771 /gene="Calr4" /note="recombination and DNA strand exchange inhibitor protein; Reviewed; Region: PRK00409" /db_xref="CDD:234750" exon 224..318 /gene="Calr4" /inference="alignment:Splign:2.1.0" exon 319..432 /gene="Calr4" /inference="alignment:Splign:2.1.0" exon 433..576 /gene="...
AA_position 269
NM_001431276.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X26, mRNA. (2122 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X24" /protein_id="XP_038946473.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGVLFPWRLPLELELHGQSIQVFP" misc_feature 1319..>1636 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" polyA_site 2122 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 116
Synonym: RGD1308593
XM_039090545.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus glia maturation factor, beta (Gmfb), transcript variant X1, mRNA. (849 bp)
long SRA reads" /db_xref="GeneID:81661" /db_xref="RGD:70910" CDS 132..584 /gene="Gmfb" /codon_start=1 /product="glia maturation factor beta isoform X1" /protein_id="XP_063130761.1" /db_xref="GeneID:81661" /db_xref="RGD:70910" /translation="MSESLVVCDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDKRLVVLDEELEGVSPDELKDELPERQPRTFIVYSYKYQHDDGRVSYPLCFIFSSPLGCKPEQQMMYAGSKNKLVQTAELTKVLSRSDVLIDFPSQYSGRAKQPDAQVFSCS" polyA_site 849 /gene="Gmfb" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 58
XM_063274691.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus TPD52 like 1 (Tpd52l1), transcript variant X5, mRNA. (808 bp)
ESTs, 14 long SRA reads, 7 Proteins" /db_xref="GeneID:689256" /db_xref="RGD:1594796" CDS 206..658 /gene="Tpd52l1" /codon_start=1 /product="tumor protein D53 isoform X5" /protein_id="XP_063130664.1" /db_xref="GeneID:689256" /db_xref="RGD:1594796" /translation="MEAQAQGLLETEPLQGRDGDAIGSADLSSMLSEEEKDELKAELVQLEEEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSRSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTAISRKFGDMRNSPTFKSFEERVETTVTSLKV" ORIGIN //...
AA_position 36
XM_063274594.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus Ly49 inhibitory receptor 5 (Ly49i5), mRNA. (1408 bp)
inhibitory receptor 5" /protein_id="NP_001009501.1" /db_xref="GeneID:494211" /db_xref="RGD:1359210" /translation="MTEQEVTYTTVRFHKSSVFQNEVRSEETQSAKEIGHRESSVPWKLIVIALGILCLLLLVTVAVLVTNIFQYRHELQKTRNRHHNCSTMENDINLKEETLRNMSVQCIPSNTLLNLFNREQNRWYKKTKTVLASPQHTARCVEMHWFCHGIKCYYFIMDIRTWHECKQTCQNYNLSFLKIDDKDELKFLQEHFIRESYWIGLSYNNIKKEWSWIDNSPLNCDLLACKPLQKTGYCIYFSMTGLHYDDCGKRHLCICEKGMDKITAPLCSVKERSQSAA" misc_feature 272..619 /gene="Ly49i5" /note="Ly49-like protein, N-terminal region; Region: Ly49; pfam08391" /db_xref="CDD:462461" misc_feature 578..925 /gene="Ly49i5" /note="C-type lectin-like domain (CTLD)...
AA_position 182
NM_001009501.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus syntrophin, alpha 1 (Snta1), mRNA. (2135 bp)
RGD:1307068" /translation="MASGRRAPRTGLLELRSGAGSGAGGERWQRVLLTLAEDALTVSPADGEPGPEPEPAQLNGAAEPGAASPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSVGWDSPPASPLQRQPSSPGPQPRNLNEAKHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDTLFLRAKDEASARSWAGAIQAQISTFIPWVKDELQALLTATGTAGSQDIKQIGWLTEQLPSGGTAPTLALLTEKELLLYCSLPQTREALSRPARTAPLIATRLVHSGPSKGSVPYDAELSFALRTGTRHGVDTHLFSVESPQELAAWTRQLVDGCHRAAEGVQEVSTACTWNGRPCNLSVHIDKGFTLWAAEPGATRAVLLRQPFEKLQMSSDDGMSLLFLDFGGAEGEIQLDLHSCPKTMVFIIHSFLSAKVTRLGLLA" misc_feature 348..596 /gene="Snta1" /note="PDZ domain of syntrophins,...
AA_position 270
NM_001100901.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X25, mRNA. (1976 bp)
gene="Efcab2" /gene_synonym="RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X23" /protein_id="XP_038946472.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGVLFPWRLPLELELHGEPFSQEEMEEMLSAAIDPESNTINYRDYITMMVIDEN" misc_feature 1319..1702 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" polyA_site 1976 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence...
AA_position 90
Synonym: RGD1308593
XM_039090544.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus Ly49 inhibitory receptor 2 (Ly49i2), mRNA. (1516 bp)
inhibitory receptor 2" /protein_id="NP_690061.2" /db_xref="GeneID:260324" /db_xref="RGD:628669" /translation="MTEQEVTYTTVRFHKSSVFQNEVRSEETQSAKEIGHRESSVPWKLIVIALGILCSVLLVTVAVLVTNCLQYNHETHELQETQNSQHNCSTMENDIKLKEEMLRNMSIESTRYNALLDLINREQKRWYNKTKTVLAAPQHTGGCVEMHWLCYGIKCYYFIIDKRTWRKCIQTCQNYSLSFLKIHDKDELKFLQDHIIRDSYWIGLSYNNNKKEWSWIDNTTLNCDLVAMISLHKTGNCKYFSMTGLHDDDCGKRHLCICEKGIEKYPAPLCSVNERSQSAL" misc_feature 320..676 /gene="Ly49i2" /note="Ly49-like protein, N-terminal region; Region: Ly49; pfam08391" /db_xref="CDD:462461" misc_feature 635..982 /gene="Ly49i2" /note="C-type lectin-like domain (CTLD) of...
AA_position 185
NM_152848.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus Ly49 inhibitory receptor 3 (Ly49i3), mRNA. (1353 bp)
receptor 3" /protein_id="NP_001009499.1" /db_xref="GeneID:494208" /db_xref="RGD:1359730" /translation="MTEQEVTYTTVRFHKSSVFHNKVRSKETLSAKENGHRESSVPWKLIVIALAILCSVLMVTVAALVTNIFQYSNEKHELQKTQNCHHNCSTIENDIKLKEEMLRNISVESVHYNAFLDLINREQKRWYKKTKTVLASPQHTGRCDEMHWFCYGIKCYYFTMDIRIWRECKQICQNYSLSFLKIDDKDELKFLQDHIIRDNYWIGSSYNNKKKEWSWIDNSPFNLDFVARTLLRKTGYCLYFSMSGLHDDDCGKRYLCICEKGMDKIPAPLCSVKETSHSAV" misc_feature 206..562 /gene="Ly49i3" /note="Ly49-like protein, N-terminal region; Region: Ly49; pfam08391" /db_xref="CDD:462461" misc_feature 521..868 /gene="Ly49i3" /note="C-type lectin-like domain (CTLD) of the...
AA_position 185
NM_001009499.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus Ly49 inhibitory receptor 4 (Ly49i4), mRNA. (1588 bp)
receptor 4" /protein_id="NP_001009495.1" /db_xref="GeneID:494204" /db_xref="RGD:1549758" /translation="MTEQEVTYTTVRFHKSSVFQNKVRSEDTRSAKENGHRESSVPWKLIVIALGILCSVLMVTVAALVTNIFQYSNEKHELQKTQNRQHNCSTMEKDINLKEETLRNMSVESVHYNALLDLINREQNRWYKKTKTVLASPQHTGGCDEMHWFCYGIKCYYFTMDIRIWHECKQTCQNYSLSFLKIDDKDELKFLQDHIIRDNYWIGSSYNNKKKEWSWIDNSPFNLDFVARNSLRKTGYCMYFSMAGLHDDDCGKRYLCICEKGMDKIPAPLCSVKETSHSAV" misc_feature 440..796 /gene="Ly49i4" /note="Ly49-like protein, N-terminal region; Region: Ly49; pfam08391" /db_xref="CDD:462461" misc_feature 755..1102 /gene="Ly49i4" /note="C-type lectin-like domain (CTLD) of the...
AA_position 185
NM_001009495.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus zinc finger and BTB domain containing 43 (Zbtb43), mRNA. (5108 bp)
NP_001012094.1" /db_xref="GeneID:311872" /db_xref="RGD:1310287" /translation="MPTNVYSSQIGHQGQSKVRFHQSPTCRTTLNKIGDEMEPGTNSFQVEFPDFSSTILQKLNQQRQQGQLCDVSIVVQGHIFQAHKAVLAASSPYFCDQVLLKNSRRIVLPDVMNPRVFENILLFSYTGRLVMPAPEIVSYLTAASFLQMWHVVDKCTEVLEGNPTVLCQKLNHGSDHQSPSSSNYNGLAESFELGSGGHTDFPKAQELRDGENEEESTKDELSSQVTEHEYLPSNSSTEHDRLSTEMASQDGEEGTNDSTEFHYTRPLYSKPSIMPHRRWIHVKPERLEQPWDGMDVHAAYDEHQVSESVNTMQTDHSAQPSGAEEEFQIVEKKVEVEFDEHAEGSNYDEQVDFYGSSMEEFSGEKLGGGLIGHKQETALAAGYSENIEMVMGIKEEASHLGFSATDKLYPCQCGKSFTHKSQRDRHMSMHLGLRPYGCSVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTKSYEAAKAGQNTTEAN" misc_feature...
AA_position 218
Synonym: Zfp297b
NM_001012094.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus small nuclear ribonucleoprotein polypeptide A (Snrpa), mRNA. (1170 bp)
alignment:Splign:2.1.0" misc_feature 71..73 /gene="Snrpa" /note="upstream in-frame stop codon" CDS 86..931 /gene="Snrpa" /codon_start=1 /product="U1 small nuclear ribonucleoprotein A" /protein_id="NP_001008304.1" /db_xref="GeneID:292729" /db_xref="RGD:1307416" /translation="MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAAAPVVGAVQPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK" misc_feature 104..370 /gene="Snrpa" /note...
AA_position 23
NM_001008303.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X24, mRNA. (1761 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X22" /protein_id="XP_038946471.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGSNIWIVANELQTDQGVSNDDRWGLFEGNG" misc_feature 1319..>1636 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" ORIGIN //...
AA_position 116
Synonym: RGD1308593
XM_039090543.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

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Redirect URI : https://ggrna.dbcls.jp/rn/aa%3aKDEL
lang : en | div : | spe : rn | query_string : aa:KDEL | format : html | download : 

0.000 | 0.000 | search_start;
0.215 | 0.215 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(aa:KDEL)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.409 | 0.194 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=(aa:KDEL)?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.414 | 0.005 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]