LOCUS       NM_001399271            1744 bp    mRNA    linear   ROD 12-JUN-2023
DEFINITION  Rattus norvegicus ring finger protein 122 (Rnf122), transcript
            variant 1, mRNA.
ACCESSION   NM_001399271 XM_039095094
VERSION     NM_001399271.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Peng Z, Shi T and Ma D.
  TITLE     RNF122: a novel ubiquitin ligase associated with calcium-modulating
            cyclophilin ligand
  JOURNAL   BMC Cell Biol 11, 41 (2010)
   PUBMED   20553626
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1744)
  AUTHORS   Wang L, Gao X, Gao P, Deng W, Yu P, Ma J, Guo J, Wang X, Cheng H,
            Zhang C, Yu C, Ma X, Lv B, Lu Y, Shi T and Ma D.
  TITLE     Cell-based screening and validation of human novel genes associated
            with cell viability
  JOURNAL   J Biomol Screen 11 (4), 369-376 (2006)
   PUBMED   16751333
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000283.1.
            
            On Jan 5, 2022 this sequence version replaced XM_039095094.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ182094.1, SRR8487231.126651.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16093047, SAMN16676808
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-357               JACYVU010000283.1  10203095-10203451   c
            358-514             JACYVU010000283.1  10197115-10197271   c
            515-560             JACYVU010000283.1  10190786-10190831   c
            561-602             JACYVU010000283.1  10190487-10190528   c
            603-685             JACYVU010000283.1  10187210-10187292   c
            686-1744            JACYVU010000283.1  10185901-10186959   c
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16q12.3"
     gene            1..1744
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /note="ring finger protein 122"
                     /db_xref="GeneID:502091"
                     /db_xref="RGD:1561238"
     exon            1..357
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /inference="alignment:Splign:2.1.0"
     CDS             333..800
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="RING finger protein 122 isoform 1"
                     /protein_id="NP_001386200.1"
                     /db_xref="GeneID:502091"
                     /db_xref="RGD:1561238"
                     /translation="

MHPFQWCNGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFISKLRNQAQSERYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIAGPTETSQSIGILLDELV"

     misc_feature    603..743
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /note="RING finger, H2 subclass, found in RING finger
                     protein 122 (RNF122) and similar proteins; Region:
                     RING-H2_RNF122; cd16676"
                     /db_xref="CDD:438338"
     misc_feature    order(609..611,618..620,663..665,669..671,678..680,
                     687..689,720..722,729..731)
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:438338"
     exon            358..514
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /inference="alignment:Splign:2.1.0"
     exon            515..560
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /inference="alignment:Splign:2.1.0"
     exon            561..602
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /inference="alignment:Splign:2.1.0"
     exon            603..685
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /inference="alignment:Splign:2.1.0"
     exon            686..1744
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gtcagttttcggaatcccagcgcgcactgctcggagaggagggacccaagcccggcttcgtgtcccggctgctccttctcggccgggcatcccggctctctctgctgccctcccggcccgggcccttcgcgattcccctcggcagggcttcgctccgaaagactttgcttccttctctgccctctttgttgctttgcaaaccgacctctctgcagcccttgactccactcctccgggagttgcatctccatcccggcggtctccgtgcacagtcccgcggattccaaaaccttgcctccgttcgctccgagaagccgaccttcacttcattgatgcacccattccagtggtgtaacgggtgtttctgtggcctggggctggtgagtaccaacaagtcctgctcaatgccaccaatcagtttccaggaccttcccctcaacatctacatggtcatcttcggcactggcatctttgtctttatgctcagtctcatcttctgctgctacttcatcagcaaactccggaaccaggcacagagcgagcgatacggctacaaggaggtggtgcttaaaggtgatgctaagaagttacagctctatgggcagacctgtgcagtttgtctggaagacttcaaggggaaggatgaactaggtgtgcttccgtgccagcatgcctttcaccgcaagtgtctggtgaagtggctagaagtgcgttgcgtctgccccatgtgcaacaagcccattgctggccccacggagacctcacagagcattgggatcctgctggatgaattggtgtaagcgctccttgcgtgcggatactggagaagactgctgactttgcgggcacctgggttccgctacacaaggaacaagattcacactcacctataggcagggatgacagagctgcccttctaccatcaccactggaccagtaccagacttgtccagtgtctgcctcccagggcttctctctgttatacatttccaatggcctcatccaggtagactactctatcctggtactggactgactatccatccacccgcctcatctgggaaggagtcaactctgtgactgtgaacatgggcacttccctttggagaacgagcaactctgaccttgaaagggtcacccctctgtcccacccacgtccttcactcctgccagagccttccatgggatggtttccaggggaaaggaaagaaagatcaagacacgaagatgaaaggctctgtgtaaagtaaaggaaggcagggacctaaaaaagggaaaagtcaatgtttacacgagatgtcggaaacaaaggccagcctcgtcctggccgactacagggtgatgggaccaaccctcccctggtaggatctgaggtgctattcattctctccctggccctggttgatctcagagccgtctagtcacggttggttttgttttgaagagactcctctctataggaaggggtctaatcctcaagtccactttcaggggctttttttttagaagcaaaacgggcctcgggatggggatggtcgggagggtacagtaatgcggatgtctgcttcctctctgtaaatagtatttttatacttcttcaccatctcaggcttacacatgcggccctgcaggatggagggggtggagtgttcccttcctcctcgcctgagcagggcggctgagagtgggaaaaggttatgtatttaaagaaaattaaatttaataacatgtttctctaatcaaa

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