GGRNA ver.2 Help | Advanced search | Japanese    Previous release (v1)

2025-04-14 00:33:11, GGRNA : RefSeq release 229 (Mar, 2025)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Saccharomyces cerevisiae S288C Tos8p (TOS8), partial mRNA. (831 bp)
misc_feature order(589..591,598..600,727..729,736..741,748..750) /gene="TOS8" /locus_tag="YGL096W" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 637..753 /gene="TOS8" /locus_tag="YGL096W" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" ORIGIN // REFERENCE 1 (bases 1 to 831) AUTHORS Engel,S.R., Wong,E.D., Nash,R.S., Aleksander,S., Alexander,M., Douglass,E., Karra,K., Miyasato,S.R., Simison,M., Skrzypek,M.S., Weng,S. and Cherry,J.M. TITLE New data and collaborations at the Saccharomyces Genome Database:...
NM_001180961.1 - Saccharomyces cerevisiae S288C - NCBI - UCSC - SGD
Saccharomyces cerevisiae S288C Cup9p (CUP9), partial mRNA. (921 bp)
misc_feature order(493..495,502..504,631..633,640..645,655..657) /gene="CUP9" /locus_tag="YPL177C" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 541..657 /gene="CUP9" /locus_tag="YPL177C" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" ORIGIN // REFERENCE 1 (bases 1 to 921) AUTHORS Engel,S.R., Wong,E.D., Nash,R.S., Aleksander,S., Alexander,M., Douglass,E., Karra,K., Miyasato,S.R., Simison,M., Skrzypek,M.S., Weng,S. and Cherry,J.M. TITLE New data and collaborations at the Saccharomyces Genome Database:...
NM_001183991.1 - Saccharomyces cerevisiae S288C - NCBI - UCSC - SGD
Saccharomyces cerevisiae S288C homeodomain mating type protein alpha2 (HMLALPHA2), partial mRNA. (633 bp)
S288C" /mol_type="mRNA" /strain="S288C" /db_xref="taxon:559292" /chromosome="III" gene 633 /gene="HMLALPHA2" /locus_tag="YCL067C" /gene_synonym="ALPHA2" /db_xref="GeneID:850292" CDS 1..633 /gene="HMLALPHA2" /locus_tag="YCL067C" /gene_synonym="ALPHA2" /note="Silenced copy of ALPHA2 at HML; homeobox-domain protein that associates with Mcm1p in haploid cells to repress a-specific gene expression and interacts with a1p in diploid cells to repress haploid-specific gene expression" /codon_start=1 /product="homeodomain mating type protein alpha2" /protein_id="NP_009866.1" /db_xref="GeneID:850292" /db...
Synonym: ALPHA2
NM_001178708.1 - Saccharomyces cerevisiae S288C - NCBI - UCSC - SGD
Saccharomyces cerevisiae S288C Hmra1p (HMRA1), partial mRNA. (381 bp)
GO:0003714 transcription corepressor activity [PMID:1977088]" /experiment="EXISTENCE:direct assay:GO:0005634 nucleus [PMID:8411150]" /experiment="EXISTENCE:direct assay:GO:0007532 regulation of mating-type specific transcription, DNA-templated [PMID:1977088]" /note="Silenced copy of a1 at HMR; homeobox corepressor that interacts with Alpha2p to repress haploid-specific gene transcription in diploid cells" /codon_start=1 /product="Hmra1p" /protein_id="NP_010021.1" /db_xref="GeneID:850459" /db_xref="SGD:S694" /translation="...
Synonym: YCR097WB
NM_001178804.1 - Saccharomyces cerevisiae S288C - NCBI - UCSC - SGD
Saccharomyces cerevisiae S288C homeodomain mating type protein alpha2 (MATALPHA2), partial mRNA. (633 bp)
specific [PMID:15598821]" /experiment="EXISTENCE:direct assay:GO:0005634 nucleus [PMID:1976249]" /experiment="EXISTENCE:direct assay:GO:0008301 DNA binding, bending [PMID:7569974|PMID:7739902]" /experiment="EXISTENCE:direct assay:GO:0043565 sequence-specific DNA binding [PMID:3893743]" /note="Homeobox-domain protein; with Mcm1p, represses a-specific genes in haploids; acts with A1p to repress transcription of haploid-specific genes in diploids; one of two genes encoded by the MATalpha mating type cassette" /codon_start=1 /product="homeodomain mating type protein alpha2" /protein_id="NP...
Synonym: ALPHA2
NM_001178753.1 - Saccharomyces cerevisiae S288C - NCBI - UCSC - SGD
Saccharomyces cerevisiae S288C Yox1p (YOX1), partial mRNA. (1158 bp)
experiment="EXISTENCE:mutant phenotype:GO:0000122 negative regulation of transcription by RNA polymerase II [PMID:17314407|PMID:12464633]" /experiment="EXISTENCE:mutant phenotype:GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding [PMID:12464633]" /note="Homeobox transcriptional repressor; binds to Mcm1p and to early cell cycle boxes (ECBs) in the promoters of cell cycle-regulated genes expressed in M/G1 phase; expression is cell cycle-regulated; phosphorylated by Cdc28p; relocalizes from nucleus to cytoplasm upon DNA replication stress; YOX1 has a...
NM_001182385.1 - Saccharomyces cerevisiae S288C - NCBI - UCSC - SGD
Saccharomyces cerevisiae S288C Yhp1p (YHP1), partial mRNA. (1062 bp)
experiment="EXISTENCE:mutant phenotype:GO:0000122 negative regulation of transcription by RNA polymerase II [PMID:10705372]" /experiment="EXISTENCE:mutant phenotype:GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding [PMID:12464633]" /note="Homeobox transcriptional repressor; binds Mcm1p and early cell cycle box (ECB) elements of cell cycle regulated genes, thereby restricting ECB-mediated transcription to the M/G1 interval; YHP1 has a paralog, YOX1, that arose from the whole genome duplication" /codon_start=1 /product="Yhp1p" /protein_id="NP_010739.3" /...
NM_001180759.3 - Saccharomyces cerevisiae S288C - NCBI - UCSC - SGD
Saccharomyces cerevisiae S288C Pho2p (PHO2), partial mRNA. (1680 bp)
II [PMID:7902583|PMID:3303332]" /experiment="EXISTENCE:mutant phenotype:GO:0120213 regulation of histidine biosynthetic process [PMID:3303332]" /experiment="EXISTENCE:mutant phenotype:GO:2000679 positive regulation of transcription regulatory region DNA binding [PMID:9354395]" /note="Homeobox transcription factor; regulatory targets include genes involved in phosphate metabolism; binds cooperatively with Pho4p to the PHO5 promoter; phosphorylation of Pho2p facilitates interaction with Pho4p; relocalizes to the cytosol in response to hypoxia" /codon_start=1 /product="Pho2p" /protein_id="NP...
Synonym: BAS2; GRF10
NM_001180165.1 - Saccharomyces cerevisiae S288C - NCBI - UCSC - SGD

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : https://ggrna.dbcls.jp/sc/homeobox
lang : en | div : | spe : sc | query_string : homeobox | format : html | download : 

0.000 | 0.000 | search_start;
0.080 | 0.080 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:homeobox)%7C(nt:homeobox)%7C(aa:homeobox))?source=Saccharomyces cerevisiae S288C?to=0&format=json
0.105 | 0.025 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:homeobox)%7C(nt:homeobox)%7C(aa:homeobox))?source=Saccharomyces cerevisiae S288C?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.106 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]