{"error":"none","results":[{"aa_position":[],"accession":"NM_001180961","definition":"Saccharomyces cerevisiae S288C Tos8p (TOS8), partial mRNA.","division":"RefSeq","geneid":"852783","gi":"","length":"831","nt_position":[],"snippet":"misc_feature order(589..591,598..600,727..729,736..741,748..750) /gene=\"TOS8\" /locus_tag=\"YGL096W\" /note=\"specific DNA base contacts [nucleotide binding]; other site\" /db_xref=\"CDD:238039\" misc_feature 637..753 /gene=\"TOS8\" /locus_tag=\"YGL096W\" /note=\"Homeobox KN domain; Region: Homeobox_KN; pfam05920\" /db_xref=\"CDD:428673\" ORIGIN // REFERENCE 1 (bases 1 to 831) AUTHORS Engel,S.R., Wong,E.D., Nash,R.S., Aleksander,S., Alexander,M., Douglass,E., Karra,K., Miyasato,S.R., Simison,M., Skrzypek,M.S., Weng,S. and Cherry,J.M. TITLE New data and collaborations at the Saccharomyces Genome Database:...","source":"Saccharomyces cerevisiae S288C","symbol":"TOS8","synonym":"","version":"NM_001180961.1"},{"aa_position":[],"accession":"NM_001183991","definition":"Saccharomyces cerevisiae S288C Cup9p (CUP9), partial mRNA.","division":"RefSeq","geneid":"855926","gi":"","length":"921","nt_position":[],"snippet":"misc_feature order(493..495,502..504,631..633,640..645,655..657) /gene=\"CUP9\" /locus_tag=\"YPL177C\" /note=\"specific DNA base contacts [nucleotide binding]; other site\" /db_xref=\"CDD:238039\" misc_feature 541..657 /gene=\"CUP9\" /locus_tag=\"YPL177C\" /note=\"Homeobox KN domain; Region: Homeobox_KN; pfam05920\" /db_xref=\"CDD:428673\" ORIGIN // REFERENCE 1 (bases 1 to 921) AUTHORS Engel,S.R., Wong,E.D., Nash,R.S., Aleksander,S., Alexander,M., Douglass,E., Karra,K., Miyasato,S.R., Simison,M., Skrzypek,M.S., Weng,S. and Cherry,J.M. TITLE New data and collaborations at the Saccharomyces Genome Database:...","source":"Saccharomyces cerevisiae S288C","symbol":"CUP9","synonym":"","version":"NM_001183991.1"},{"aa_position":[],"accession":"NM_001178708","definition":"Saccharomyces cerevisiae S288C homeodomain mating type protein alpha2 (HMLALPHA2), partial mRNA.","division":"RefSeq","geneid":"850292","gi":"","length":"633","nt_position":[],"snippet":"S288C\" /mol_type=\"mRNA\" /strain=\"S288C\" /db_xref=\"taxon:559292\" /chromosome=\"III\" gene 633 /gene=\"HMLALPHA2\" /locus_tag=\"YCL067C\" /gene_synonym=\"ALPHA2\" /db_xref=\"GeneID:850292\" CDS 1..633 /gene=\"HMLALPHA2\" /locus_tag=\"YCL067C\" /gene_synonym=\"ALPHA2\" /note=\"Silenced copy of ALPHA2 at HML; homeobox-domain protein that associates with Mcm1p in haploid cells to repress a-specific gene expression and interacts with a1p in diploid cells to repress haploid-specific gene expression\" /codon_start=1 /product=\"homeodomain mating type protein alpha2\" /protein_id=\"NP_009866.1\" /db_xref=\"GeneID:850292\" /db...","source":"Saccharomyces cerevisiae S288C","symbol":"HMLALPHA2","synonym":"ALPHA2","version":"NM_001178708.1"},{"aa_position":[],"accession":"NM_001178804","definition":"Saccharomyces cerevisiae S288C Hmra1p (HMRA1), partial mRNA.","division":"RefSeq","geneid":"850459","gi":"","length":"381","nt_position":[],"snippet":"GO:0003714 transcription corepressor activity [PMID:1977088]\" /experiment=\"EXISTENCE:direct assay:GO:0005634 nucleus [PMID:8411150]\" /experiment=\"EXISTENCE:direct assay:GO:0007532 regulation of mating-type specific transcription, DNA-templated [PMID:1977088]\" /note=\"Silenced copy of a1 at HMR; homeobox corepressor that interacts with Alpha2p to repress haploid-specific gene transcription in diploid cells\" /codon_start=1 /product=\"Hmra1p\" /protein_id=\"NP_010021.1\" /db_xref=\"GeneID:850459\" /db_xref=\"SGD:S694\" /translation=\"...","source":"Saccharomyces cerevisiae S288C","symbol":"HMRA1","synonym":"YCR097WB","version":"NM_001178804.1"},{"aa_position":[],"accession":"NM_001178753","definition":"Saccharomyces cerevisiae S288C homeodomain mating type protein alpha2 (MATALPHA2), partial mRNA.","division":"RefSeq","geneid":"850406","gi":"","length":"633","nt_position":[],"snippet":"specific [PMID:15598821]\" /experiment=\"EXISTENCE:direct assay:GO:0005634 nucleus [PMID:1976249]\" /experiment=\"EXISTENCE:direct assay:GO:0008301 DNA binding, bending [PMID:7739902|PMID:7569974]\" /experiment=\"EXISTENCE:direct assay:GO:0043565 sequence-specific DNA binding [PMID:3893743]\" /note=\"Homeobox-domain protein; with Mcm1p, represses a-specific genes in haploids; acts with A1p to repress transcription of haploid-specific genes in diploids; one of two genes encoded by the MATalpha mating type cassette\" /codon_start=1 /product=\"homeodomain mating type protein alpha2\" /protein_id=\"NP...","source":"Saccharomyces cerevisiae S288C","symbol":"MATALPHA2","synonym":"ALPHA2","version":"NM_001178753.1"},{"aa_position":[],"accession":"NM_001182385","definition":"Saccharomyces cerevisiae S288C Yox1p (YOX1), partial mRNA.","division":"RefSeq","geneid":"854981","gi":"","length":"1158","nt_position":[],"snippet":"experiment=\"EXISTENCE:mutant phenotype:GO:0000122 negative regulation of transcription by RNA polymerase II [PMID:17314407|PMID:12464633]\" /experiment=\"EXISTENCE:mutant phenotype:GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding [PMID:12464633]\" /note=\"Homeobox transcriptional repressor; binds to Mcm1p and to early cell cycle boxes (ECBs) in the promoters of cell cycle-regulated genes expressed in M/G1 phase; expression is cell cycle-regulated; phosphorylated by Cdc28p; relocalizes from nucleus to cytoplasm upon DNA replication stress; YOX1 has a...","source":"Saccharomyces cerevisiae S288C","symbol":"YOX1","synonym":"","version":"NM_001182385.1"},{"aa_position":[],"accession":"NM_001180759","definition":"Saccharomyces cerevisiae S288C Yhp1p (YHP1), partial mRNA.","division":"RefSeq","geneid":"852062","gi":"","length":"1062","nt_position":[],"snippet":"experiment=\"EXISTENCE:mutant phenotype:GO:0000122 negative regulation of transcription by RNA polymerase II [PMID:10705372]\" /experiment=\"EXISTENCE:mutant phenotype:GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding [PMID:12464633]\" /note=\"Homeobox transcriptional repressor; binds Mcm1p and early cell cycle box (ECB) elements of cell cycle regulated genes, thereby restricting ECB-mediated transcription to the M/G1 interval; YHP1 has a paralog, YOX1, that arose from the whole genome duplication\" /codon_start=1 /product=\"Yhp1p\" /protein_id=\"NP_010739.3\" /...","source":"Saccharomyces cerevisiae S288C","symbol":"YHP1","synonym":"","version":"NM_001180759.3"},{"aa_position":[],"accession":"NM_001180165","definition":"Saccharomyces cerevisiae S288C Pho2p (PHO2), partial mRNA.","division":"RefSeq","geneid":"851452","gi":"","length":"1680","nt_position":[],"snippet":"chromatin remodeling [PMID:2196175]\" /experiment=\"EXISTENCE:mutant phenotype:GO:0045944 positive regulation of transcription by RNA polymerase II [PMID:3303332|PMID:7902583]\" /experiment=\"EXISTENCE:mutant phenotype:GO:0120213 regulation of histidine biosynthetic process [PMID:3303332]\" /note=\"Homeobox transcription factor; regulatory targets include genes involved in phosphate metabolism; binds cooperatively with Pho4p to the PHO5 promoter; phosphorylation of Pho2p facilitates interaction with Pho4p; relocalizes to the cytosol in response to hypoxia\" /codon_start=1 /product=\"Pho2p\" /protein_id...","source":"Saccharomyces cerevisiae S288C","symbol":"PHO2","synonym":"BAS2; GRF10","version":"NM_001180165.1"}],"summary":[{"count":8,"keyword":"homeobox"},{"count":8,"keyword":"[INTERSECTION]"}],"time":"2026-04-24 22:25:25","version":"GGRNA.v2 : RefSeq release 233 (Jan, 2026)"}