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2024-04-19 09:53:38, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Mus musculus argonaute RISC catalytic subunit 4 (Ago4), transcript variant X4, mRNA. (8017 bp)
misc_feature <2656..2784 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature 2923..4230 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and...
Synonym: 5730550L01Rik; Eif2c4
XM_006503483.5 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
PREDICTED: Mus musculus argonaute RISC catalytic subunit 3 (Ago3), transcript variant X10, mRNA. (14553 bp)
misc_feature <54..272 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(66..68,111..113,153..155,165..167,219..221,240..242, 246..248) /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /...
Synonym: C130014L07Rik; Eif2c3
XM_017320100.2 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
PREDICTED: Mus musculus argonaute RISC catalytic subunit 3 (Ago3), transcript variant X5, mRNA. (15260 bp)
misc_feature 638..979 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(773..775,818..820,860..862,872..874,926..928, 947..949,953..955) /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="nucleic acid-binding interface [nucleotide binding]; other site...
Synonym: C130014L07Rik; Eif2c3
XM_036163952.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
PREDICTED: Mus musculus argonaute RISC catalytic subunit 3 (Ago3), transcript variant X4, mRNA. (15291 bp)
misc_feature 669..1010 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(804..806,849..851,891..893,903..905,957..959, 978..980,984..986) /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="nucleic acid-binding interface [nucleotide binding]; other site...
Synonym: C130014L07Rik; Eif2c3
XM_036163951.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
PREDICTED: Mus musculus argonaute RISC catalytic subunit 3 (Ago3), transcript variant X3, mRNA. (15696 bp)
misc_feature 1074..1415 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1209..1211,1254..1256,1296..1298,1308..1310, 1362..1364,1383..1385,1389..1391) /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="nucleic acid-binding interface...
Synonym: C130014L07Rik; Eif2c3
XM_036163949.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
PREDICTED: Mus musculus argonaute RISC catalytic subunit 3 (Ago3), transcript variant X9, mRNA. (15836 bp)
misc_feature <1337..1555 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1349..1351,1394..1396,1436..1438,1448..1450, 1502..1504,1523..1525,1529..1531) /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="nucleic acid-binding interface...
Synonym: C130014L07Rik; Eif2c3
XM_030253391.2 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
PREDICTED: Mus musculus argonaute RISC catalytic subunit 3 (Ago3), transcript variant X8, mRNA. (15746 bp)
misc_feature <1247..1465 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1259..1261,1304..1306,1346..1348,1358..1360, 1412..1414,1433..1435,1439..1441) /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="nucleic acid-binding interface...
Synonym: C130014L07Rik; Eif2c3
XM_030253390.2 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
PREDICTED: Mus musculus argonaute RISC catalytic subunit 3 (Ago3), transcript variant X7, mRNA. (15824 bp)
misc_feature <1325..1543 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1337..1339,1382..1384,1424..1426,1436..1438, 1490..1492,1511..1513,1517..1519) /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="nucleic acid-binding interface...
Synonym: C130014L07Rik; Eif2c3
XM_030253389.2 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
PREDICTED: Mus musculus argonaute RISC catalytic subunit 1 (Ago1), transcript variant X1, mRNA. (7442 bp)
misc_feature 888..1040 /gene="Ago1" /gene_synonym="Eif2c1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1041..1403 /gene="Ago1" /gene_synonym="Eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order...
Synonym: Eif2c1
XM_011240521.2 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
PREDICTED: Mus musculus argonaute RISC catalytic subunit 4 (Ago4), transcript variant X1, mRNA. (2850 bp)
misc_feature 459..848 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 879..1031 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1032..1394 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has...
Synonym: 5730550L01Rik; Eif2c4
XM_036164537.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
PREDICTED: Mus musculus argonaute RISC catalytic subunit 3 (Ago3), transcript variant X2, mRNA. (3553 bp)
misc_feature 498..782 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 810..962 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 963..1325 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been...
Synonym: C130014L07Rik; Eif2c3
XM_006502917.5 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
PREDICTED: Mus musculus argonaute RISC catalytic subunit 3 (Ago3), transcript variant X1, mRNA. (3006 bp)
misc_feature 498..782 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 810..962 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 963..1325 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been...
Synonym: C130014L07Rik; Eif2c3
XM_011240478.4 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus argonaute RISC catalytic subunit 4 (Ago4), mRNA. (6527 bp)
misc_feature 331..720 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 751..903 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 904..1266 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been...
Synonym: 5730550L01Rik; Eif2c4
NM_153177.3 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus argonaute RISC catalytic subunit 3 (Ago3), mRNA. (7635 bp)
Swiss-Prot (Q8CJF9.2); acetylation site" misc_feature 473..757 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 785..937 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 938..1300 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA...
Synonym: C130014L07Rik; Eif2c3
NM_153402.2 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus argonaute RISC catalytic subunit 1 (Ago1), transcript variant 2, mRNA. (7337 bp)
misc_feature 764..916 /gene="Ago1" /gene_synonym="Eif2c1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 917..1279 /gene="Ago1" /gene_synonym="Eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order...
Synonym: Eif2c1
NM_001317174.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus argonaute RISC catalytic subunit 1 (Ago1), transcript variant 1, mRNA. (7255 bp)
misc_feature 262..654 /gene="Ago1" /gene_synonym="Eif2c1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 682..834 /gene="Ago1" /gene_synonym="Eif2c1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 835..1197 /gene="Ago1" /gene_synonym="Eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and...
Synonym: Eif2c1
NM_001317173.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus argonaute RISC catalytic subunit 1 (Ago1), transcript variant 3, mRNA. (7284 bp)
misc_feature 310..702 /gene="Ago1" /gene_synonym="Eif2c1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 730..882 /gene="Ago1" /gene_synonym="Eif2c1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 883..1245 /gene="Ago1" /gene_synonym="Eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and...
Synonym: Eif2c1
NM_001378879.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus argonaute RISC catalytic subunit 1 (Ago1), transcript variant 1, mRNA. (7255 bp)
misc_feature 262..654 /gene="Ago1" /gene_synonym="Eif2c1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:406799" misc_feature 682..834 /gene="Ago1" /gene_synonym="Eif2c1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:400854" misc_feature 835..1197 /gene="Ago1" /gene_synonym="Eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and...
Synonym: Eif2c1
NM_153403.3 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus piwi-like RNA-mediated gene silencing 2 (Piwil2), transcript variant 2, mRNA. (6023 bp)
gene="Piwil2" /gene_synonym="mili; Piwil1l" /note="large tegument protein UL36; Provisional; Region: PHA03247" /db_xref="CDD:223021" misc_feature 2313..2456 /gene="Piwil2" /gene_synonym="mili; Piwil1l" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 2457..2810 /gene="Piwil2" /gene_synonym="mili; Piwil1l" /note="PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of...
Synonym: mili; Piwil1l
NM_001364321.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
PREDICTED: Mus musculus piwi-like RNA-mediated gene silencing 2 (Piwil2), transcript variant X1, mRNA. (4994 bp)
gene="Piwil2" /gene_synonym="mili; Piwil1l" /note="large tegument protein UL36; Provisional; Region: PHA03247" /db_xref="CDD:223021" misc_feature 1284..1427 /gene="Piwil2" /gene_synonym="mili; Piwil1l" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1428..1781 /gene="Piwil2" /gene_synonym="mili; Piwil1l" /note="PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of...
Synonym: mili; Piwil1l
XM_006519329.4 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus piwi-like RNA-mediated gene silencing 2 (Piwil2), transcript variant 1, mRNA. (4930 bp)
PRMT5. /evidence=ECO:0000269|PubMed:19584108, ECO:0000269|PubMed:19918066; propagated from UniProtKB/Swiss-Prot (Q8CDG1.2); methylation site" misc_feature 1220..1363 /gene="Piwil2" /gene_synonym="mili; Piwil1l" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1364..1717 /gene="Piwil2" /gene_synonym="mili; Piwil1l" /note="PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of...
Synonym: mili; Piwil1l
NM_021308.2 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/mm/Argonaute+%22PAZ+domain%22
lang : en | div : | spe : mm | query_string : Argonaute "PAZ domain" | format : html | download : 

0.000 | 0.000 | search_start;
0.082 | 0.082 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?source=Mus musculus (house mouse)?to=0&format=json
0.095 | 0.013 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Mus musculus (house mouse)?to=0&format=json
0.160 | 0.065 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))%26((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Mus musculus (house mouse)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.165 | 0.004 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]