GGRNA | Results

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Mus musculus argonaute RISC catalytic subunit 4 (Ago4), transcript variant X1, mRNA. (2850 bp)

misc_feature 459..848 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 879..1031 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1032..1394 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has...

Synonym: 5730550L01Rik; Eif2c4
XM_036164537.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus argonaute RISC catalytic subunit 3 (Ago3), mRNA. (7635 bp)

gene_synonym="C130014L07Rik; Eif2c3" /note="argonaute RISC catalytic subunit 3" /db_xref="GeneID:214150" /db_xref="MGI:MGI:2446634" exon 1..275 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /inference="alignment:Splign:2.1.0" misc_feature 254..256 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="upstream in-frame stop codon" CDS 257..2839 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /EC_number="3.1.26.n2" /note="argonaute 3; eukaryotic translation initiation factor 2C, 3; argonaute RISC catalytic component 3; Piwi/Argonaute family protein meIF2C3; mAgo3; eIF2C 3; eIF-2C 3;...

Synonym: C130014L07Rik; Eif2c3
NM_153402.2 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

PREDICTED: Mus musculus argonaute RISC catalytic subunit 4 (Ago4), transcript variant X4, mRNA. (8017 bp)

misc_feature <2656..2784 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature 2923..4230 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and...

Synonym: 5730550L01Rik; Eif2c4
XM_006503483.5 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

PREDICTED: Mus musculus argonaute RISC catalytic subunit 1 (Ago1), transcript variant X1, mRNA. (7442 bp)

misc_feature 888..1040 /gene="Ago1" /gene_synonym="Eif2c1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1041..1403 /gene="Ago1" /gene_synonym="Eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order...

Synonym: Eif2c1
XM_011240521.2 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

PREDICTED: Mus musculus argonaute RISC catalytic subunit 3 (Ago3), transcript variant X2, mRNA. (3553 bp)

misc_feature 498..782 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 810..962 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 963..1325 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been...

Synonym: C130014L07Rik; Eif2c3
XM_006502917.5 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

PREDICTED: Mus musculus argonaute RISC catalytic subunit 3 (Ago3), transcript variant X1, mRNA. (3006 bp)

Synonym: C130014L07Rik; Eif2c3
XM_011240478.4 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

PREDICTED: Mus musculus argonaute RISC catalytic subunit 3 (Ago3), transcript variant X10, mRNA. (14553 bp)

misc_feature <54..272 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(66..68,111..113,153..155,165..167,219..221,240..242, 246..248) /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /...

Synonym: C130014L07Rik; Eif2c3
XM_017320100.2 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

PREDICTED: Mus musculus argonaute RISC catalytic subunit 3 (Ago3), transcript variant X5, mRNA. (15260 bp)

misc_feature 638..979 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(773..775,818..820,860..862,872..874,926..928, 947..949,953..955) /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="nucleic acid-binding interface [nucleotide binding]; other site...

Synonym: C130014L07Rik; Eif2c3
XM_036163952.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

PREDICTED: Mus musculus argonaute RISC catalytic subunit 3 (Ago3), transcript variant X4, mRNA. (15291 bp)

misc_feature 669..1010 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(804..806,849..851,891..893,903..905,957..959, 978..980,984..986) /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="nucleic acid-binding interface [nucleotide binding]; other site...

Synonym: C130014L07Rik; Eif2c3
XM_036163951.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

PREDICTED: Mus musculus argonaute RISC catalytic subunit 3 (Ago3), transcript variant X3, mRNA. (15696 bp)

misc_feature 1074..1415 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1209..1211,1254..1256,1296..1298,1308..1310, 1362..1364,1383..1385,1389..1391) /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="nucleic acid-binding interface...

Synonym: C130014L07Rik; Eif2c3
XM_036163949.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

PREDICTED: Mus musculus argonaute RISC catalytic subunit 3 (Ago3), transcript variant X9, mRNA. (15836 bp)

misc_feature <1337..1555 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1349..1351,1394..1396,1436..1438,1448..1450, 1502..1504,1523..1525,1529..1531) /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="nucleic acid-binding interface...

Synonym: C130014L07Rik; Eif2c3
XM_030253391.2 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

PREDICTED: Mus musculus argonaute RISC catalytic subunit 3 (Ago3), transcript variant X8, mRNA. (15746 bp)

misc_feature <1247..1465 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1259..1261,1304..1306,1346..1348,1358..1360, 1412..1414,1433..1435,1439..1441) /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="nucleic acid-binding interface...

Synonym: C130014L07Rik; Eif2c3
XM_030253390.2 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

PREDICTED: Mus musculus argonaute RISC catalytic subunit 3 (Ago3), transcript variant X7, mRNA. (15824 bp)

misc_feature <1325..1543 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1337..1339,1382..1384,1424..1426,1436..1438, 1490..1492,1511..1513,1517..1519) /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="nucleic acid-binding interface...

Synonym: C130014L07Rik; Eif2c3
XM_030253389.2 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus argonaute RISC catalytic subunit 1 (Ago1), transcript variant 2, mRNA. (7337 bp)

gene="Ago1" /gene_synonym="Eif2c1" /note="upstream in-frame stop codon" exon 675..893 /gene="Ago1" /gene_synonym="Eif2c1" /inference="alignment:Splign:2.1.0" CDS 698..2818 /gene="Ago1" /gene_synonym="Eif2c1" /note="isoform 2 is encoded by transcript variant 2; Piwi/Argonaute family protein meIF2C1; argonaute 1; protein argonaute-1; mAgo1; eIF2C 1; eIF-2C 1; argonaute1; eukaryotic translation initiation factor 2C, 1; argonaute RISC catalytic component 1" /codon_start=1 /product="protein argonaute-1 isoform 2" /protein_id="NP_001304103.1" /db_xref="GeneID:236511" /db_xref="MGI:MGI:2446630" /...

Synonym: Eif2c1
NM_001317174.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus argonaute RISC catalytic subunit 2 (Ago2), mRNA. (13793 bp)

mKIAA4215" /note="argonaute RISC catalytic subunit 2" /db_xref="GeneID:239528" /db_xref="MGI:MGI:2446632" exon 1..168 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /inference="alignment:Splign:2.1.0" misc_feature 21..23 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /note="upstream in-frame stop codon" CDS 147..2729 /gene="Ago2" /gene_synonym="1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215" /EC_number="3.1.26.n2" /note="argonaute 2; Piwi/Argonaute family protein meIF2C2; eukaryotic...

Synonym: 1110029L17Rik; 2310051F07Rik; Eif2c2; Gerp95; Gm10365; mKIAA4215
NM_153178.5 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus argonaute RISC catalytic subunit 4 (Ago4), mRNA. (6527 bp)

chromosome="4" /map="4 60.9 cM" gene 1..6527 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="argonaute RISC catalytic subunit 4" /db_xref="GeneID:76850" /db_xref="MGI:MGI:1924100" exon 1..274 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /inference="alignment:Splign:2.1.0" misc_feature 58..60 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="upstream in-frame stop codon" CDS 256..2841 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="Piwi/Argonaute family protein meIF2C4; argonaute 4; eukaryotic translation initiation factor 2C, 4; argonaute RISC catalytic...

Synonym: 5730550L01Rik; Eif2c4
NM_153177.3 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus argonaute RISC catalytic subunit 1 (Ago1), transcript variant 1, mRNA. (7255 bp)

mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="4" /map="4 60.76 cM" gene 1..7255 /gene="Ago1" /gene_synonym="Eif2c1" /note="argonaute RISC catalytic subunit 1" /db_xref="GeneID:236511" /db_xref="MGI:MGI:2446630" exon 1..187 /gene="Ago1" /gene_synonym="Eif2c1" /inference="alignment:Splign:2.1.0" CDS 163..2850 /gene="Ago1" /gene_synonym="Eif2c1" /note="isoform 1x is encoded by transcript variant 1; Piwi/Argonaute family protein meIF2C1; argonaute 1; protein argonaute-1; mAgo1; eIF2C 1; eIF-2C 1; argonaute1; eukaryotic translation initiation factor 2C, 1; argonaute RISC...

Synonym: Eif2c1
NM_001317173.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus argonaute RISC catalytic subunit 1 (Ago1), transcript variant 3, mRNA. (7284 bp)

mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="4" /map="4 60.76 cM" gene 1..7284 /gene="Ago1" /gene_synonym="Eif2c1" /note="argonaute RISC catalytic subunit 1" /db_xref="GeneID:236511" /db_xref="MGI:MGI:2446630" exon 1..235 /gene="Ago1" /gene_synonym="Eif2c1" /inference="alignment:Splign:2.1.0" CDS 211..2793 /gene="Ago1" /gene_synonym="Eif2c1" /note="isoform 3 is encoded by transcript variant 3; Piwi/Argonaute family protein meIF2C1; argonaute 1; protein argonaute-1; mAgo1; eIF2C 1; eIF-2C 1; argonaute1; eukaryotic translation initiation factor 2C, 1; argonaute RISC...

Synonym: Eif2c1
NM_001378879.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

PREDICTED: Mus musculus argonaute RISC catalytic subunit 4 (Ago4), transcript variant X2, mRNA. (6403 bp)

misc_feature 426..2537 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1533..2600 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order...

Synonym: 5730550L01Rik; Eif2c4
XM_006503481.5 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

PREDICTED: Mus musculus argonaute RISC catalytic subunit 4 (Ago4), transcript variant X6, mRNA. (5181 bp)

LOCUS XM_036164539 5181 bp mRNA linear ROD 10-APR-2023 DEFINITION PREDICTED: Mus musculus argonaute RISC catalytic subunit 4 (Ago4), transcript variant X6, mRNA. ACCESSION XM_036164539 VERSION XM_036164539.1 DBLINK BioProject: PRJNA169 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus...misc_feature 318..1394 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two...

Synonym: 5730550L01Rik; Eif2c4
XM_036164539.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

PREDICTED: Mus musculus argonaute RISC catalytic subunit 4 (Ago4), transcript variant X5, mRNA. (6482 bp)

LOCUS XM_036164538 6482 bp mRNA linear ROD 10-APR-2023 DEFINITION PREDICTED: Mus musculus argonaute RISC catalytic subunit 4 (Ago4), transcript variant X5, mRNA. ACCESSION XM_036164538 VERSION XM_036164538.1 DBLINK BioProject: PRJNA169 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus...misc_feature 1619..2695 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two...

Synonym: 5730550L01Rik; Eif2c4
XM_036164538.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus argonaute RISC catalytic subunit 1 (Ago1), transcript variant 1, mRNA. (7255 bp)

mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="4" /map="4 60.76 cM" gene 1..7255 /gene="Ago1" /gene_synonym="Eif2c1" /note="argonaute RISC catalytic subunit 1" /db_xref="GeneID:236511" /db_xref="MGI:MGI:2446630" exon 1..187 /gene="Ago1" /gene_synonym="Eif2c1" /inference="alignment:Splign:2.1.0" CDS 163..2736 /gene="Ago1" /gene_synonym="Eif2c1" /note="isoform 1 is encoded by transcript variant 1; Piwi/Argonaute family protein meIF2C1; argonaute 1; protein argonaute-1; mAgo1; eIF2C 1; eIF-2C 1; argonaute1; eukaryotic translation initiation factor 2C, 1; argonaute RISC...

Synonym: Eif2c1
NM_153403.3 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

PREDICTED: Mus musculus argonaute RISC catalytic subunit 3 (Ago3), transcript variant X6, misc_RNA. (15590 bp)

LOCUS XR_001784115 15590 bp RNA linear ROD 10-APR-2023 DEFINITION PREDICTED: Mus musculus argonaute RISC catalytic subunit 3 (Ago3), transcript variant X6, misc_RNA. ACCESSION XR_001784115 VERSION XR_001784115.3 DBLINK BioProject: PRJNA169 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a...

Synonym: C130014L07Rik; Eif2c3
XR_001784115.3 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

PREDICTED: Mus musculus argonaute RISC catalytic subunit 4 (Ago4), transcript variant X3, mRNA. (2599 bp)

LOCUS XM_006503482 2599 bp mRNA linear ROD 10-APR-2023 DEFINITION PREDICTED: Mus musculus argonaute RISC catalytic subunit 4 (Ago4), transcript variant X3, mRNA. ACCESSION XM_006503482 VERSION XM_006503482.4 DBLINK BioProject: PRJNA169 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a...

Synonym: 5730550L01Rik; Eif2c4
XM_006503482.4 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus eukaryotic translation initiation factor 2C, 5 (Eif2c5l), long non-coding RNA. (1273 bp)

Loveland JE, Mudge J, Sheppard D, Thomas M, Trevanion S and Wilming LG. TITLE The Vertebrate Genome Annotation browser 10 years on JOURNAL Nucleic Acids Res 42 (Database issue), D771-D779 (2014) PUBMED 24316575 REFERENCE 3 (bases 1 to 1273) AUTHORS Chi SW, Zang JB, Mele A and Darnell RB. TITLE Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps JOURNAL Nature 460 (7254), 479-486 (2009) PUBMED 19536157 REFERENCE 4 (bases 1 to 1273) AUTHORS Carmell MA, Xuan Z, Zhang MQ and Hannon GJ. TITLE The Argonaute family: tentacles that reach into RNAi, developmental control, stem cell maintenance,...

Synonym: Ago5; Eif2c5; Lnc10
NR_164359.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus gametocyte specific factor 1 (Gtsf1), mRNA. (740 bp)

gene_synonym="1700006H03Rik; Cue110" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 740) AUTHORS Arif A, Bailey S, Izumi N, Anzelon TA, Ozata DM, Andersson C, Gainetdinov I, MacRae IJ, Tomari Y and Zamore PD. TITLE GTSF1 accelerates target RNA cleavage by PIWI-clade Argonaute proteins JOURNAL Nature 608 (7923), 618-625 (2022) PUBMED 35772669 REMARK GeneRIF: GTSF1 accelerates target RNA cleavage by PIWI-clade Argonaute proteins. REFERENCE 2 (bases 1 to 740) AUTHORS He Y, Chen Q, Dai J, Cui Y, Zhang C, Wen X, Li J, Xiao Y, Peng X, Liu M, Shen B, Sha J, Hu Z, Li J and Shu W...

Synonym: 1700006H03Rik; Cue110
NM_028797.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus oocyte maturation, beta (Omt2b), mRNA. (735 bp)

alignment:Splign:2.1.0" exon 407..735 /gene="Omt2b" /gene_synonym="Mosg; OM2b" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 735) AUTHORS Gindi N, Grossman H, Bar-Joseph H, Miller I, Nemerovsky L, Hadas R, Nevo N, Galiani D, Dekel N and Shalgi R. TITLE Fyn and argonaute 2 participate in maternal-mRNA degradation during mouse oocyte maturation JOURNAL Cell Cycle 21 (8), 792-804 (2022) PUBMED 35104175 REFERENCE 2 (bases 1 to 735) AUTHORS Popova NV and Morris RJ. TITLE Genetic regulation of mouse stem cells: identification of two keratinocyte stem cell regulatory loci...

Synonym: Mosg; OM2b
NM_205822.2 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus piwi-like RNA-mediated gene silencing 2 (Piwil2), transcript variant 2, mRNA. (6023 bp)

misc_feature <1308..1904 /gene="Piwil2" /gene_synonym="mili; Piwil1l" /note="large tegument protein UL36; Provisional; Region: PHA03247" /db_xref="CDD:223021" misc_feature 2313..2456 /gene="Piwil2" /gene_synonym="mili; Piwil1l" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 2457..2810 /gene="Piwil2" /gene_synonym="mili; Piwil1l" /note="PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in...

Synonym: mili; Piwil1l
NM_001364321.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus microRNA 466g (Mir466g), microRNA. (80 bp)

db_xref="GeneID:100124495" /db_xref="MGI:MGI:3718536" /db_xref="miRBase:MI0005510" ORIGIN // REFERENCE 1 (bases 1 to 80) AUTHORS Polikepahad S and Corry DB. TITLE Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2 JOURNAL Nucleic Acids Res 41 (2), 1164-1177 (2013) PUBMED 23185045 REFERENCE 2 (bases 1 to 80) AUTHORS Pogribny IP, Starlard-Davenport A, Tryndyak VP, Han T, Ross SA, Rusyn I and Beland FA. TITLE Difference in expression of hepatic microRNAs miR-29c, miR-34a, miR-155, and miR-200b...

Synonym: Mirn466g
NR_030569.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus microRNA 467e (Mir467e), microRNA. (87 bp)

db_xref="GeneID:100124448" /db_xref="MGI:MGI:3718541" /db_xref="miRBase:MI0006128" ORIGIN // REFERENCE 1 (bases 1 to 87) AUTHORS Polikepahad S and Corry DB. TITLE Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2 JOURNAL Nucleic Acids Res 41 (2), 1164-1177 (2013) PUBMED 23185045 REFERENCE 2 (bases 1 to 87) AUTHORS Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA and Rajkovic A. TITLE MicroRNA transcriptome in the newborn mouse ovaries determined by massive...

Synonym: Mirn467e
NR_030645.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus microRNA 467a-6 (Mir467a-6), microRNA. (83 bp)

loss JOURNAL PLoS One 8 (4), e62786 (2013) PUBMED 23646144 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 83) AUTHORS Polikepahad S and Corry DB. TITLE Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2 JOURNAL Nucleic Acids Res 41 (2), 1164-1177 (2013) PUBMED 23185045 REFERENCE 4 (bases 1 to 83) AUTHORS Zheng GX, Ravi A, Gould GM, Burge CB and Sharp PA. TITLE Genome-wide impact of a recently expanded microRNA cluster in mouse JOURNAL Proc Natl Acad Sci U S A...

Synonym: Mirn467a-6; mmu-mir-467a-6
NR_037258.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus microRNA 467a-4 (Mir467a-4), microRNA. (83 bp)

Synonym: Mirn467a-4; mmu-mir-467a-4
NR_037254.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus microRNA 467a-2 (Mir467a-2), microRNA. (83 bp)

Synonym: Mirn467a-2; mmu-mir-467a-2
NR_037249.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus microRNA 467a-8 (Mir467a-8), microRNA. (83 bp)

Synonym: Gm22705; Mirn467a-8; mmu-mir-467a-8
NR_037263.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus microRNA 467a-7 (Mir467a-7), microRNA. (83 bp)

Synonym: Mirn467a-7; mmu-mir-467a-7
NR_037261.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus microRNA 467a-3 (Mir467a-3), microRNA. (83 bp)

Synonym: Mirn467a-3; mmu-mir-467a-3
NR_037252.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus trinucleotide repeat containing 6a (Tnrc6a), mRNA. (8493 bp)

transcriptional gene silencing through the RNA interference (RNAi) and microRNA pathways. The human protein associates with messenger RNAs and argonaute proteins in cytoplasmic bodies known as GW-bodies or P-bodies, and inhibiting its expression delocalizes other GW-body proteins and impairs RNAi...ECO:0000250" misc_feature 3621..4004 /gene="Tnrc6a" /gene_synonym="2010321I05Rik; 3110054G10Rik; CAGH26; D130023A07Rik; GW182; Tnrc6" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3870..3989 /gene="Tnrc6a" /gene_synonym="2010321I05Rik; 3110054G10Rik; CAGH26;...

Synonym: 2010321I05Rik; 3110054G10Rik; CAGH26; D130023A07Rik; GW182; Tnrc6
NM_144925.3 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus microRNA 467a-5 (Mir467a-5), microRNA. (83 bp)

loss JOURNAL PLoS One 8 (4), e62786 (2013) PUBMED 23646144 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 83) AUTHORS Polikepahad S and Corry DB. TITLE Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2 JOURNAL Nucleic Acids Res 41 (2), 1164-1177 (2013) PUBMED 23185045 REFERENCE 5 (bases 1 to 83) AUTHORS Zheng GX, Ravi A, Gould GM, Burge CB and Sharp PA. TITLE Genome-wide impact of a recently expanded microRNA cluster in mouse JOURNAL Proc Natl Acad Sci U S A...

Synonym: Mirn467a-5; mmu-mir-467a-5
NR_037256.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus microRNA 5100 (Mir5100), microRNA. (64 bp)

and adipocyte differentiation JOURNAL J Clin Invest 125 (4), 1509-1522 (2015) PUBMED 25751060 REFERENCE 5 (bases 1 to 64) AUTHORS Polikepahad S and Corry DB. TITLE Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2 JOURNAL Nucleic Acids Res 41 (2), 1164-1177 (2013) PUBMED 23185045 REFERENCE 6 (bases 1 to 64) AUTHORS Spierings DC, McGoldrick D, Hamilton-Easton AM, Neale G, Murchison EP, Hannon GJ, Green DR and Withoff S. TITLE Ordered progression of stage-specific miRNA profiles in the mouse...

Synonym: mir-5100; mmu-mir-5100; mu-mir-5100
NR_039559.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus microRNA 669c (Mir669c), microRNA. (109 bp)

db_xref="GeneID:735273" /db_xref="MGI:MGI:3629619" /db_xref="miRBase:MI0004673" ORIGIN // REFERENCE 1 (bases 1 to 109) AUTHORS Polikepahad S and Corry DB. TITLE Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2 JOURNAL Nucleic Acids Res 41 (2), 1164-1177 (2013) PUBMED 23185045 REFERENCE 2 (bases 1 to 109) AUTHORS Pogribny IP, Starlard-Davenport A, Tryndyak VP, Han T, Ross SA, Rusyn I and Beland FA. TITLE Difference in expression of hepatic microRNAs miR-29c, miR-34a, miR-155, and miR-200b is...

Synonym: Mirn669c; Mirn669c-1
NR_030473.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus piwi-like RNA-mediated gene silencing 2 (Piwil2), transcript variant 1, mRNA. (4930 bp)

Piwil2" /gene_synonym="mili; Piwil1l" /note="Symmetric dimethylarginine, by PRMT5. /evidence=ECO:0000269|PubMed:19584108, ECO:0000269|PubMed:19918066; propagated from UniProtKB/Swiss-Prot (Q8CDG1.2); methylation site" misc_feature 1220..1363 /gene="Piwil2" /gene_synonym="mili; Piwil1l" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1364..1717 /gene="Piwil2" /gene_synonym="mili; Piwil1l" /note="PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the...

Synonym: mili; Piwil1l
NM_021308.2 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

PREDICTED: Mus musculus trinucleotide repeat containing 6a (Tnrc6a), transcript variant X18, mRNA. (4284 bp)

misc_feature 3701..3979 /gene="Tnrc6a" /gene_synonym="2010321I05Rik; 3110054G10Rik; CAGH26; D130023A07Rik; GW182; Tnrc6" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" ORIGIN //...

Synonym: 2010321I05Rik; 3110054G10Rik; CAGH26; D130023A07Rik; GW182; Tnrc6
XM_011241765.3 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus microRNA 374c (Mir374c), microRNA. (49 bp)

PUBMED 31422096 REMARK GeneRIF: Low miR374c expression is associated with pulmonary hypertension. REFERENCE 4 (bases 1 to 49) AUTHORS Polikepahad S and Corry DB. TITLE Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2 JOURNAL Nucleic Acids Res 41 (2), 1164-1177 (2013) PUBMED 23185045 REFERENCE 5 (bases 1 to 49) AUTHORS Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C and Bartel DP. TITLE Mammalian...

Synonym: mmu-mir-374c
NR_037298.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus microRNA 8105 (Mir8105), microRNA. (89 bp)

db_xref="GeneID:102465894" /db_xref="MGI:MGI:5530728" /db_xref="miRBase:MI0026035" ORIGIN // REFERENCE 1 (bases 1 to 89) AUTHORS Polikepahad S and Corry DB. TITLE Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2 JOURNAL Nucleic Acids Res 41 (2), 1164-1177 (2013) PUBMED 23185045 REFERENCE 2 (bases 1 to 89) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34...

Synonym: Gm27346; mmu-mir-8105
NR_106183.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus microRNA 1668 (Mir1668), microRNA. (107 bp)

db_xref="GeneID:102465897" /db_xref="MGI:MGI:5530972" /db_xref="miRBase:MI0026040" ORIGIN // REFERENCE 1 (bases 1 to 107) AUTHORS Polikepahad S and Corry DB. TITLE Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2 JOURNAL Nucleic Acids Res 41 (2), 1164-1177 (2013) PUBMED 23185045 REFERENCE 2 (bases 1 to 107) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34...

Synonym: Gm27590; mmu-mir-1668
NR_106188.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus microRNA 8107 (Mir8107), microRNA. (117 bp)

db_xref="GeneID:102466885" /db_xref="MGI:MGI:5530837" /db_xref="miRBase:MI0026038" ORIGIN // REFERENCE 1 (bases 1 to 117) AUTHORS Polikepahad S and Corry DB. TITLE Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2 JOURNAL Nucleic Acids Res 41 (2), 1164-1177 (2013) PUBMED 23185045 REFERENCE 2 (bases 1 to 117) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34...

Synonym: Gm27455; mmu-mir-8107
NR_106186.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus microRNA 8113 (Mir8113), microRNA. (129 bp)

db_xref="GeneID:102465901" /db_xref="MGI:MGI:5530776" /db_xref="miRBase:MI0026045" ORIGIN // REFERENCE 1 (bases 1 to 129) AUTHORS Polikepahad S and Corry DB. TITLE Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2 JOURNAL Nucleic Acids Res 41 (2), 1164-1177 (2013) PUBMED 23185045 REFERENCE 2 (bases 1 to 129) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34...

Synonym: Gm27394; mmu-mir-8113
NR_106193.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus microRNA 8111 (Mir8111), microRNA. (137 bp)

db_xref="GeneID:102466886" /db_xref="MGI:MGI:5531205" /db_xref="miRBase:MI0026043" ORIGIN // REFERENCE 1 (bases 1 to 137) AUTHORS Polikepahad S and Corry DB. TITLE Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2 JOURNAL Nucleic Acids Res 41 (2), 1164-1177 (2013) PUBMED 23185045 REFERENCE 2 (bases 1 to 137) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34...

Synonym: Gm27823; mmu-mir-8111
NR_106191.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus microRNA 8106 (Mir8106), microRNA. (139 bp)

db_xref="GeneID:102465896" /db_xref="MGI:MGI:5530976" /db_xref="miRBase:MI0026037" ORIGIN // REFERENCE 1 (bases 1 to 139) AUTHORS Polikepahad S and Corry DB. TITLE Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2 JOURNAL Nucleic Acids Res 41 (2), 1164-1177 (2013) PUBMED 23185045 REFERENCE 2 (bases 1 to 139) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34...

Synonym: Gm27594; mmu-mir-8106
NR_106185.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Mus musculus microRNA 8119 (Mir8119), microRNA. (129 bp)

db_xref="GeneID:102465997" /db_xref="MGI:MGI:5530949" /db_xref="miRBase:MI0026051" ORIGIN // REFERENCE 1 (bases 1 to 129) AUTHORS Polikepahad S and Corry DB. TITLE Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2 JOURNAL Nucleic Acids Res 41 (2), 1164-1177 (2013) PUBMED 23185045 REFERENCE 2 (bases 1 to 129) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34...

Synonym: Gm27567; mmu-mir-8119
NR_106199.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Data Export:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
JSON format: Link | Download

Debug Info:

0.000 | 0.000 | search_start;
0.080 | 0.080 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?source=Mus musculus (house mouse)?to=0&format=json
0.139 | 0.060 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?source=Mus musculus (house mouse)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.145 | 0.006 | cgi_end;

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]

Summary:

Results:

Data Export:

Debug Info: