{"error":"none","results":[{"aa_position":[],"accession":"NM_001032796","definition":"Ciona intestinalis diencephalon/mesencephalon homeobox protein 1-like (LOC100178876), mRNA.","division":"RefSeq","geneid":"100178876","gi":"","length":"952","nt_position":[],"snippet":"LOCUS NM_001032796 952 bp mRNA linear INV 30-AUG-2020 DEFINITION Ciona intestinalis diencephalon/mesencephalon homeobox protein 1-like (LOC100178876), mRNA. ACCESSION NM_001032796 XM_002119104 VERSION NM_001032796.2 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EAAA01000420.1. On or before Jan 19, 2019 this sequence version replaced XM...","source":"Ciona intestinalis (vase tunicate)","symbol":"LOC100178876","synonym":"dmbx; DMBX1","version":"NM_001032796.2"},{"aa_position":[],"accession":"NM_001032517","definition":"Ciona intestinalis paired superclass homeobox transcription factor (pitx), mRNA.","division":"RefSeq","geneid":"445699","gi":"","length":"1788","nt_position":[],"snippet":"LOCUS NM_001032517 1788 bp mRNA linear INV 07-DEC-2018 DEFINITION Ciona intestinalis paired superclass homeobox transcription factor (pitx), mRNA. ACCESSION NM_001032517 XM_004227039 XM_004227040 XM_009863003 VERSION NM_001032517.2 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EAAA01003470.1. On Dec 7, 2018 this sequence version...","source":"Ciona intestinalis (vase tunicate)","symbol":"pitx","synonym":"Ci-Pitx; PITX1","version":"NM_001032517.2"},{"aa_position":[],"accession":"XM_078630936","definition":"PREDICTED: Ciona intestinalis homeobox protein BarH-like 1 (LOC144745134), mRNA.","division":"RefSeq","geneid":"144745134","gi":"","length":"526","nt_position":[],"snippet":"LOCUS XM_078630936 526 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox protein BarH-like 1 (LOC144745134), mRNA. ACCESSION XM_078630936 VERSION XM_078630936.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136099) annotated using gene prediction method: Gnomon. Also see:...","source":"Ciona intestinalis (vase tunicate)","symbol":"LOC144745134","synonym":"","version":"XM_078630936.1"},{"aa_position":[],"accession":"XM_078629127","definition":"PREDICTED: Ciona intestinalis homeobox protein Hox-A7-like (LOC100182939), mRNA.","division":"RefSeq","geneid":"100182939","gi":"","length":"737","nt_position":[],"snippet":"LOCUS XM_078629127 737 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox protein Hox-A7-like (LOC100182939), mRNA. ACCESSION XM_078629127 VERSION XM_078629127.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136093) annotated using gene prediction method: Gnomon. Also see:...","source":"Ciona intestinalis (vase tunicate)","symbol":"LOC100182939","synonym":"","version":"XM_078629127.1"},{"aa_position":[],"accession":"XM_018815634","definition":"PREDICTED: Ciona intestinalis homeobox protein not2 (LOC778836), mRNA.","division":"RefSeq","geneid":"778836","gi":"","length":"955","nt_position":[],"snippet":"LOCUS XM_018815634 955 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox protein not2 (LOC778836), mRNA. ACCESSION XM_018815634 VERSION XM_018815634.3 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136097) annotated using gene prediction method: Gnomon. Also see: Documentation...","source":"Ciona intestinalis (vase tunicate)","symbol":"LOC778836","synonym":"","version":"XM_018815634.3"},{"aa_position":[],"accession":"XM_078635669","definition":"PREDICTED: Ciona intestinalis barH-like 1 homeobox protein (LOC778550), mRNA.","division":"RefSeq","geneid":"778550","gi":"","length":"920","nt_position":[],"snippet":"LOCUS XM_078635669 920 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis barH-like 1 homeobox protein (LOC778550), mRNA. ACCESSION XM_078635669 VERSION XM_078635669.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136103) annotated using gene prediction method: Gnomon. Also see:...","source":"Ciona intestinalis (vase tunicate)","symbol":"LOC778550","synonym":"","version":"XM_078635669.1"},{"aa_position":[],"accession":"XM_004225838","definition":"PREDICTED: Ciona intestinalis homeobox protein Hox-D3 (LOC101242509), mRNA.","division":"RefSeq","geneid":"101242509","gi":"","length":"1129","nt_position":[],"snippet":"LOCUS XM_004225838 1129 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox protein Hox-D3 (LOC101242509), mRNA. ACCESSION XM_004225838 VERSION XM_004225838.3 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136095) annotated using gene prediction method: Gnomon. Also see:...","source":"Ciona intestinalis (vase tunicate)","symbol":"LOC101242509","synonym":"","version":"XM_004225838.3"},{"aa_position":[],"accession":"XM_078632327","definition":"PREDICTED: Ciona intestinalis homeobox protein XHOX-7.1 (LOC778699), mRNA.","division":"RefSeq","geneid":"778699","gi":"","length":"1013","nt_position":[],"snippet":"LOCUS XM_078632327 1013 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox protein XHOX-7.1 (LOC778699), mRNA. ACCESSION XM_078632327 VERSION XM_078632327.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136100) annotated using gene prediction method: Gnomon. Also see:...","source":"Ciona intestinalis (vase tunicate)","symbol":"LOC778699","synonym":"","version":"XM_078632327.1"},{"aa_position":[],"accession":"XM_078628407","definition":"PREDICTED: Ciona intestinalis homeobox protein BarH-like 1b (LOC778552), transcript variant X2, mRNA.","division":"RefSeq","geneid":"778552","gi":"","length":"1169","nt_position":[],"snippet":"LOCUS XM_078628407 1169 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox protein BarH-like 1b (LOC778552), transcript variant X2, mRNA. ACCESSION XM_078628407 VERSION XM_078628407.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136096) annotated using gene prediction method...","source":"Ciona intestinalis (vase tunicate)","symbol":"LOC778552","synonym":"","version":"XM_078628407.1"},{"aa_position":[],"accession":"XM_078628406","definition":"PREDICTED: Ciona intestinalis homeobox protein BarH-like 1b (LOC778552), transcript variant X1, mRNA.","division":"RefSeq","geneid":"778552","gi":"","length":"1172","nt_position":[],"snippet":"LOCUS XM_078628406 1172 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox protein BarH-like 1b (LOC778552), transcript variant X1, mRNA. ACCESSION XM_078628406 VERSION XM_078628406.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136096) annotated using gene prediction method...","source":"Ciona intestinalis (vase tunicate)","symbol":"LOC778552","synonym":"","version":"XM_078628406.1"},{"aa_position":[],"accession":"XM_026834904","definition":"PREDICTED: Ciona intestinalis homeobox transcription factor Hox13 (hox13), mRNA.","division":"RefSeq","geneid":"100169888","gi":"","length":"1596","nt_position":[],"snippet":"LOCUS XM_026834904 1596 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor Hox13 (hox13), mRNA. ACCESSION XM_026834904 VERSION XM_026834904.2 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136099) annotated using gene prediction method: Gnomon, supported by...","source":"Ciona intestinalis (vase tunicate)","symbol":"hox13","synonym":"","version":"XM_026834904.2"},{"aa_position":[],"accession":"XM_078637515","definition":"PREDICTED: Ciona intestinalis homeobox transcription factor Hox1 (hox1), mRNA.","division":"RefSeq","geneid":"445718","gi":"","length":"1617","nt_position":[],"snippet":"LOCUS XM_078637515 1617 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor Hox1 (hox1), mRNA. ACCESSION XM_078637515 VERSION XM_078637515.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136093) annotated using gene prediction method: Gnomon. Also see:...","source":"Ciona intestinalis (vase tunicate)","symbol":"hox1","synonym":"","version":"XM_078637515.1"},{"aa_position":[],"accession":"XM_078627171","definition":"PREDICTED: Ciona intestinalis homeobox transcription factor, LAG1-like 4 (LOC100169897), mRNA.","division":"RefSeq","geneid":"100169897","gi":"","length":"2619","nt_position":[],"snippet":"LOCUS XM_078627171 2619 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor, LAG1-like 4 (LOC100169897), mRNA. ACCESSION XM_078627171 VERSION XM_078627171.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136095) annotated using gene prediction method: Gnomon...","source":"Ciona intestinalis (vase tunicate)","symbol":"LOC100169897","synonym":"","version":"XM_078627171.1"},{"aa_position":[],"accession":"XM_026837825","definition":"PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx5 (LOC778665), mRNA.","division":"RefSeq","geneid":"778665","gi":"","length":"1431","nt_position":[],"snippet":"LOCUS XM_026837825 1431 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx5 (LOC778665), mRNA. ACCESSION XM_026837825 VERSION XM_026837825.2 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136103) annotated using gene prediction method: Gnomon. Also see:...","source":"Ciona intestinalis (vase tunicate)","symbol":"LOC778665","synonym":"","version":"XM_026837825.2"},{"aa_position":[],"accession":"XM_002123997","definition":"PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx9 (LOC778666), mRNA.","division":"RefSeq","geneid":"778666","gi":"","length":"1639","nt_position":[],"snippet":"LOCUS XM_002123997 1639 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx9 (LOC778666), mRNA. ACCESSION XM_002123997 VERSION XM_002123997.5 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136101) annotated using gene prediction method: Gnomon. Also see:...","source":"Ciona intestinalis (vase tunicate)","symbol":"LOC778666","synonym":"","version":"XM_002123997.5"},{"aa_position":[],"accession":"XM_002119507","definition":"PREDICTED: Ciona intestinalis homeobox protein six1b (LOC778753), mRNA.","division":"RefSeq","geneid":"778753","gi":"","length":"1802","nt_position":[],"snippet":"LOCUS XM_002119507 1802 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox protein six1b (LOC778753), mRNA. ACCESSION XM_002119507 VERSION XM_002119507.5 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136102) annotated using gene prediction method: Gnomon. Also see:...","source":"Ciona intestinalis (vase tunicate)","symbol":"LOC778753","synonym":"","version":"XM_002119507.5"},{"aa_position":[],"accession":"XM_078634197","definition":"PREDICTED: Ciona intestinalis homeobox transcription factor TTF1 (titf1), mRNA.","division":"RefSeq","geneid":"445676","gi":"","length":"3049","nt_position":[],"snippet":"LOCUS XM_078634197 3049 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor TTF1 (titf1), mRNA. ACCESSION XM_078634197 VERSION XM_078634197.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136102) annotated using gene prediction method: Gnomon, supported by...","source":"Ciona intestinalis (vase tunicate)","symbol":"titf1","synonym":"","version":"XM_078634197.1"},{"aa_position":[],"accession":"XM_078633703","definition":"PREDICTED: Ciona intestinalis homeobox-containing protein 1 (LOC778606), transcript variant X3, mRNA.","division":"RefSeq","geneid":"778606","gi":"","length":"1935","nt_position":[],"snippet":"LOCUS XM_078633703 1935 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox-containing protein 1 (LOC778606), transcript variant X3, mRNA. ACCESSION XM_078633703 VERSION XM_078633703.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136093) annotated using gene prediction method...","source":"Ciona intestinalis (vase tunicate)","symbol":"LOC778606","synonym":"","version":"XM_078633703.1"},{"aa_position":[],"accession":"XM_078633012","definition":"PREDICTED: Ciona intestinalis homeobox transcription factor Pax6 (pax6), transcript variant X1, mRNA.","division":"RefSeq","geneid":"445643","gi":"","length":"1942","nt_position":[],"snippet":"LOCUS XM_078633012 1942 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor Pax6 (pax6), transcript variant X1, mRNA. ACCESSION XM_078633012 VERSION XM_078633012.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136101) annotated using gene prediction method...","source":"Ciona intestinalis (vase tunicate)","symbol":"pax6","synonym":"","version":"XM_078633012.1"},{"aa_position":[],"accession":"XM_009861895","definition":"PREDICTED: Ciona intestinalis homeobox transcription factor Pax1/9 (pax1/9), transcript variant X2, mRNA.","division":"RefSeq","geneid":"445592","gi":"","length":"2225","nt_position":[],"snippet":"LOCUS XM_009861895 2225 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor Pax1/9 (pax1/9), transcript variant X2, mRNA. ACCESSION XM_009861895 VERSION XM_009861895.4 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136103) annotated using gene prediction...","source":"Ciona intestinalis (vase tunicate)","symbol":"pax1/9","synonym":"","version":"XM_009861895.4"},{"aa_position":[],"accession":"XM_018813865","definition":"PREDICTED: Ciona intestinalis homeobox transcription factor Pax1/9 (pax1/9), transcript variant X1, mRNA.","division":"RefSeq","geneid":"445592","gi":"","length":"2046","nt_position":[],"snippet":"LOCUS XM_018813865 2046 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor Pax1/9 (pax1/9), transcript variant X1, mRNA. ACCESSION XM_018813865 VERSION XM_018813865.3 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136103) annotated using gene prediction...","source":"Ciona intestinalis (vase tunicate)","symbol":"pax1/9","synonym":"","version":"XM_018813865.3"},{"aa_position":[],"accession":"XM_078633696","definition":"PREDICTED: Ciona intestinalis homeobox-containing protein 1 (LOC778606), transcript variant X2, mRNA.","division":"RefSeq","geneid":"778606","gi":"","length":"1968","nt_position":[],"snippet":"LOCUS XM_078633696 1968 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox-containing protein 1 (LOC778606), transcript variant X2, mRNA. ACCESSION XM_078633696 VERSION XM_078633696.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136093) annotated using gene prediction method...","source":"Ciona intestinalis (vase tunicate)","symbol":"LOC778606","synonym":"","version":"XM_078633696.1"},{"aa_position":[],"accession":"XM_078633690","definition":"PREDICTED: Ciona intestinalis homeobox-containing protein 1 (LOC778606), transcript variant X1, mRNA.","division":"RefSeq","geneid":"778606","gi":"","length":"1971","nt_position":[],"snippet":"LOCUS XM_078633690 1971 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox-containing protein 1 (LOC778606), transcript variant X1, mRNA. ACCESSION XM_078633690 VERSION XM_078633690.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136093) annotated using gene prediction method...","source":"Ciona intestinalis (vase tunicate)","symbol":"LOC778606","synonym":"","version":"XM_078633690.1"},{"aa_position":[],"accession":"XM_009861448","definition":"PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx3a type 1 (lhx3), transcript variant X2, mRNA.","division":"RefSeq","geneid":"778667","gi":"","length":"2706","nt_position":[],"snippet":"LOCUS XM_009861448 2706 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx3a type 1 (lhx3), transcript variant X2, mRNA. ACCESSION XM_009861448 VERSION XM_009861448.3 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136105) annotated using gene prediction method:...","source":"Ciona intestinalis (vase tunicate)","symbol":"lhx3","synonym":"","version":"XM_009861448.3"},{"aa_position":[],"accession":"XM_026835747","definition":"PREDICTED: Ciona intestinalis homeobox transcription factor Pax6 (pax6), transcript variant X2, mRNA.","division":"RefSeq","geneid":"445643","gi":"","length":"1939","nt_position":[],"snippet":"LOCUS XM_026835747 1939 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor Pax6 (pax6), transcript variant X2, mRNA. ACCESSION XM_026835747 VERSION XM_026835747.2 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136101) annotated using gene prediction method...","source":"Ciona intestinalis (vase tunicate)","symbol":"pax6","synonym":"","version":"XM_026835747.2"},{"aa_position":[],"accession":"XM_078637537","definition":"PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx3a type 1 (lhx3), transcript variant X1, mRNA.","division":"RefSeq","geneid":"778667","gi":"","length":"2585","nt_position":[],"snippet":"LOCUS XM_078637537 2585 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx3a type 1 (lhx3), transcript variant X1, mRNA. ACCESSION XM_078637537 VERSION XM_078637537.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136105) annotated using gene prediction method:...","source":"Ciona intestinalis (vase tunicate)","symbol":"lhx3","synonym":"","version":"XM_078637537.1"},{"aa_position":[],"accession":"XM_009863002","definition":"PREDICTED: Ciona intestinalis paired superclass homeobox transcription factor (pitx), transcript variant X1, mRNA.","division":"RefSeq","geneid":"445699","gi":"","length":"1884","nt_position":[],"snippet":"LOCUS XM_009863002 1884 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis paired superclass homeobox transcription factor (pitx), transcript variant X1, mRNA. ACCESSION XM_009863002 VERSION XM_009863002.4 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136098) annotated using gene...","source":"Ciona intestinalis (vase tunicate)","symbol":"pitx","synonym":"","version":"XM_009863002.4"},{"aa_position":[],"accession":"XM_018815448","definition":"PREDICTED: Ciona intestinalis paired superclass homeobox transcription factor (pitx), transcript variant X2, mRNA.","division":"RefSeq","geneid":"445699","gi":"","length":"2314","nt_position":[],"snippet":"LOCUS XM_018815448 2314 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis paired superclass homeobox transcription factor (pitx), transcript variant X2, mRNA. ACCESSION XM_018815448 VERSION XM_018815448.3 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136098) annotated using gene...","source":"Ciona intestinalis (vase tunicate)","symbol":"pitx","synonym":"","version":"XM_018815448.3"},{"aa_position":[],"accession":"NM_001128878","definition":"Ciona intestinalis homeobox transcription factor, LAG1-like 4 (LOC100169897), mRNA.","division":"RefSeq","geneid":"100169897","gi":"","length":"1256","nt_position":[],"snippet":"LOCUS NM_001128878 1256 bp mRNA linear INV 22-JAN-2026 DEFINITION Ciona intestinalis homeobox transcription factor, LAG1-like 4 (LOC100169897), mRNA. ACCESSION NM_001128878 VERSION NM_001128878.1 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB210524.1. ##Evidence-Data-START## Transcript exon combination :: AB210524.1 [ECO:0000332] ##...","source":"Ciona intestinalis (vase tunicate)","symbol":"LOC100169897","synonym":"","version":"NM_001128878.1"},{"aa_position":[],"accession":"XM_078629054","definition":"PREDICTED: Ciona intestinalis diencephalon/mesencephalon homeobox protein 1-like (LOC100178876), mRNA.","division":"RefSeq","geneid":"100178876","gi":"","length":"975","nt_position":[],"snippet":"LOCUS XM_078629054 975 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis diencephalon/mesencephalon homeobox protein 1-like (LOC100178876), mRNA. ACCESSION XM_078629054 VERSION XM_078629054.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136093) annotated using gene prediction method...","source":"Ciona intestinalis (vase tunicate)","symbol":"LOC100178876","synonym":"","version":"XM_078629054.1"},{"aa_position":[],"accession":"NM_001128872","definition":"Ciona intestinalis homeobox transcription factor Hox13 (hox13), mRNA.","division":"RefSeq","geneid":"100169888","gi":"","length":"1315","nt_position":[],"snippet":"LOCUS NM_001128872 1315 bp mRNA linear INV 26-JAN-2026 DEFINITION Ciona intestinalis homeobox transcription factor Hox13 (hox13), mRNA. ACCESSION NM_001128872 VERSION NM_001128872.1 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB210493.1. ##Evidence-Data-START## Transcript exon combination :: AB210493.1, BW342903.1 [ECO:0000332] ##...","source":"Ciona intestinalis (vase tunicate)","symbol":"hox13","synonym":"Ci-Hox13; hox12/13","version":"NM_001128872.1"},{"aa_position":[],"accession":"NM_001032495","definition":"Ciona intestinalis homeobox transcription factor TTF1 (titf1), mRNA.","division":"RefSeq","geneid":"445676","gi":"","length":"2297","nt_position":[],"snippet":"LOCUS NM_001032495 2297 bp mRNA linear INV 26-JAN-2026 DEFINITION Ciona intestinalis homeobox transcription factor TTF1 (titf1), mRNA. ACCESSION NM_001032495 VERSION NM_001032495.1 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AJ009607.1. ##Evidence-Data-START## Transcript exon combination :: AJ009607.1, AB210735.1 [ECO:0000332] ##...","source":"Ciona intestinalis (vase tunicate)","symbol":"titf1","synonym":"Ci-TTF1; TTF1","version":"NM_001032495.1"},{"aa_position":[],"accession":"XM_026833760","definition":"PREDICTED: Ciona intestinalis homeobox transcription factor hox2 (hox2), mRNA.","division":"RefSeq","geneid":"619238","gi":"","length":"2039","nt_position":[],"snippet":"LOCUS XM_026833760 2039 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor hox2 (hox2), mRNA. ACCESSION XM_026833760 VERSION XM_026833760.2 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136093) annotated using gene prediction method: Gnomon, supported by...","source":"Ciona intestinalis (vase tunicate)","symbol":"hox2","synonym":"","version":"XM_026833760.2"},{"aa_position":[],"accession":"NM_001032422","definition":"Ciona intestinalis homeobox transcription factor Pax1/9 (pax1/9), mRNA.","division":"RefSeq","geneid":"445592","gi":"","length":"1698","nt_position":[],"snippet":"LOCUS NM_001032422 1698 bp mRNA linear INV 26-JAN-2026 DEFINITION Ciona intestinalis homeobox transcription factor Pax1/9 (pax1/9), mRNA. ACCESSION NM_001032422 VERSION NM_001032422.1 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB020762.1. ##Evidence-Data-START## Transcript exon combination :: AB020762.1, AB210627.1 [ECO:0000332] ##...","source":"Ciona intestinalis (vase tunicate)","symbol":"pax1/9","synonym":"Ci-Pax1/9","version":"NM_001032422.1"},{"aa_position":[],"accession":"NM_001078287","definition":"Ciona intestinalis LIM/homeobox protein Lhx3a type 1 (lhx3), mRNA.","division":"RefSeq","geneid":"778667","gi":"","length":"2637","nt_position":[],"snippet":"LOCUS NM_001078287 2637 bp mRNA linear INV 26-JAN-2026 DEFINITION Ciona intestinalis LIM/homeobox protein Lhx3a type 1 (lhx3), mRNA. ACCESSION NM_001078287 VERSION NM_001078287.1 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB210532.1. ##Evidence-Data-START## Transcript exon combination :: AB210532.1 [ECO:0000332] ##Evidence-Data-END...","source":"Ciona intestinalis (vase tunicate)","symbol":"lhx3","synonym":"Ci-Lhx3a; Lhx4","version":"NM_001078287.1"},{"aa_position":[],"accession":"NM_001128861","definition":"Ciona intestinalis homeobox transcription factor Hox1 (hox1), mRNA.","division":"RefSeq","geneid":"445718","gi":"","length":"1506","nt_position":[],"snippet":"LOCUS NM_001128861 1506 bp mRNA linear INV 26-JAN-2026 DEFINITION Ciona intestinalis homeobox transcription factor Hox1 (hox1), mRNA. ACCESSION NM_001128861 VERSION NM_001128861.1 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB210490.1. ##Evidence-Data-START## Transcript exon combination :: AB210490.1, AK116194.1 [ECO:0000332] ##...","source":"Ciona intestinalis (vase tunicate)","symbol":"hox1","synonym":"Ci-Hox1","version":"NM_001128861.1"},{"aa_position":[],"accession":"NM_001032469","definition":"Ciona intestinalis homeobox transcription factor Pax6 (pax6), mRNA.","division":"RefSeq","geneid":"445643","gi":"","length":"1930","nt_position":[],"snippet":"LOCUS NM_001032469 1930 bp mRNA linear INV 26-JAN-2026 DEFINITION Ciona intestinalis homeobox transcription factor Pax6 (pax6), mRNA. ACCESSION NM_001032469 VERSION NM_001032469.1 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB079883.1. ##Evidence-Data-START## Transcript exon combination :: AB079883.1 [ECO:0000332] ##Evidence-Data-END...","source":"Ciona intestinalis (vase tunicate)","symbol":"pax6","synonym":"Ci-Pax6","version":"NM_001032469.1"},{"aa_position":[],"accession":"NM_001078335","definition":"Ciona intestinalis transcription factor protein (prep), mRNA.","division":"RefSeq","geneid":"778735","gi":"","length":"2290","nt_position":[],"snippet":"misc_feature 293..550 /gene=\"prep\" /note=\"N-terminal of Homeobox Meis and PKNOX1; Region: Meis_PKNOX_N; pfam16493\" /db_xref=\"CDD:465140\" misc_feature order(869..883,887..889,947..949,965..967,1004..1006, 1010..1015,1022..1027,1031..1039) /gene=\"prep\" /note=\"DNA binding site [nucleotide binding]\" /db_xref=\"CDD:238039\" misc_feature order(875..877,884..886,1013..1015,1022..1027,1034..1036) /gene=\"prep\" /note=\"specific DNA base contacts [nucleotide binding]; other site\" /db_xref=\"CDD:238039\" misc_feature 923..1039 /gene=\"prep\" /note=\"Homeobox KN domain; Region: Homeobox_KN; pfam05920\" /db_xref=\"...","source":"Ciona intestinalis (vase tunicate)","symbol":"prep","synonym":"","version":"NM_001078335.1"},{"aa_position":[],"accession":"NM_001078475","definition":"Ciona intestinalis transcription factor protein (meis), mRNA.","division":"RefSeq","geneid":"778904","gi":"","length":"2618","nt_position":[],"snippet":"misc_feature 537..797 /gene=\"meis\" /note=\"N-terminal of Homeobox Meis and PKNOX1; Region: Meis_PKNOX_N; pfam16493\" /db_xref=\"CDD:465140\" misc_feature order(1119..1130,1134..1136,1194..1196,1212..1214, 1251..1253,1257..1262,1269..1274,1278..1286) /gene=\"meis\" /note=\"DNA binding site [nucleotide binding]\" /db_xref=\"CDD:238039\" misc_feature order(1122..1124,1131..1133,1260..1262,1269..1274, 1281..1283) /gene=\"meis\" /note=\"specific DNA base contacts [nucleotide binding]; other site\" /db_xref=\"CDD:238039\" misc_feature 1170..1286 /gene=\"meis\" /note=\"Homeobox KN domain; Region: Homeobox_KN;...","source":"Ciona intestinalis (vase tunicate)","symbol":"meis","synonym":"","version":"NM_001078475.1"},{"aa_position":[],"accession":"NM_001078280","definition":"Ciona intestinalis transcription factor protein (irx-c), mRNA.","division":"RefSeq","geneid":"778658","gi":"","length":"2662","nt_position":[],"snippet":"","source":"Ciona intestinalis (vase tunicate)","symbol":"irx-c","synonym":"","version":"NM_001078280.1"},{"aa_position":[],"accession":"NM_001078279","definition":"Ciona intestinalis transcription factor protein (irx-b), mRNA.","division":"RefSeq","geneid":"778657","gi":"","length":"2230","nt_position":[],"snippet":"gene=\"irx-b\" /note=\"DNA binding site [nucleotide binding]\" /db_xref=\"CDD:238039\" misc_feature order(464..466,473..475,602..604,611..616,623..625) /gene=\"irx-b\" /note=\"specific DNA base contacts [nucleotide binding]; other site\" /db_xref=\"CDD:238039\" misc_feature 512..628 /gene=\"irx-b\" /note=\"Homeobox KN domain; Region: Homeobox_KN; pfam05920\" /db_xref=\"CDD:428673\" exon 329..432 /gene=\"irx-b\" /inference=\"alignment:Splign:2.1.0\" exon 433..595 /gene=\"irx-b\" /inference=\"alignment:Splign:2.1.0\" exon 596..902 /gene=\"irx-b\" /inference=\"alignment:Splign:2.1.0\" exon 903..1833 /gene=\"irx-b\" /inference=\"...","source":"Ciona intestinalis (vase tunicate)","symbol":"irx-b","synonym":"","version":"NM_001078279.1"},{"aa_position":[],"accession":"NM_001078278","definition":"Ciona intestinalis transcription factor protein (irx-a), mRNA.","division":"RefSeq","geneid":"778656","gi":"","length":"2127","nt_position":[],"snippet":"gene=\"irx-a\" /note=\"DNA binding site [nucleotide binding]\" /db_xref=\"CDD:238039\" misc_feature order(490..492,499..501,628..630,637..642,649..651) /gene=\"irx-a\" /note=\"specific DNA base contacts [nucleotide binding]; other site\" /db_xref=\"CDD:238039\" misc_feature 538..654 /gene=\"irx-a\" /note=\"Homeobox KN domain; Region: Homeobox_KN; pfam05920\" /db_xref=\"CDD:428673\" exon 133..360 /gene=\"irx-a\" /inference=\"alignment:Splign:2.1.0\" exon 361..458 /gene=\"irx-a\" /inference=\"alignment:Splign:2.1.0\" exon 459..621 /gene=\"irx-a\" /inference=\"alignment:Splign:2.1.0\" exon 622..757 /gene=\"irx-a\" /inference=\"...","source":"Ciona intestinalis (vase tunicate)","symbol":"irx-a","synonym":"","version":"NM_001078278.1"},{"aa_position":[],"accession":"NM_001032500","definition":"Ciona intestinalis distal-less (dll-b), mRNA.","division":"RefSeq","geneid":"445682","gi":"","length":"1151","nt_position":[],"snippet":"TITLE A cDNA resource from the basal chordate Ciona intestinalis JOURNAL Genesis 33 (4), 153-154 (2002) PUBMED 12203911 REFERENCE 7 (bases 1 to 1151) AUTHORS Caracciolo A, Di Gregorio A, Aniello F, Di Lauro R and Branno M. TITLE Identification and developmental expression of three Distal-less homeobox containing genes in the ascidian Ciona intestinalis JOURNAL Mech. Dev. 99 (1-2), 173-176 (2000) PUBMED 11091088 REFERENCE 8 (bases 1 to 1151) AUTHORS Di Gregorio A, Spagnuolo A, Ristoratore F, Pischetola M, Aniello F, Branno M, Cariello L and Di Lauro R. TITLE Cloning of ascidian homeobox genes...","source":"Ciona intestinalis (vase tunicate)","symbol":"dll-b","synonym":"Ci-Dll-B; DLX3","version":"NM_001032500.1"},{"aa_position":[],"accession":"NM_001032511","definition":"Ciona intestinalis Prx1 protein (prx1), mRNA.","division":"RefSeq","geneid":"445693","gi":"","length":"2665","nt_position":[],"snippet":"map=\"12\" gene 1..2665 /gene=\"prx1\" /gene_synonym=\"Ci-Rx; Rax\" /note=\"Prx1 protein\" /db_xref=\"GeneID:445693\" exon 1..1575 /gene=\"prx1\" /gene_synonym=\"Ci-Rx; Rax\" /inference=\"alignment:Splign:2.1.0\" CDS 30..2510 /gene=\"prx1\" /gene_synonym=\"Ci-Rx; Rax\" /function=\"transcription factor\" /note=\"homeobox transcription factor, Rx\" /codon_start=1 /product=\"Prx1 protein\" /protein_id=\"NP_001027683.1\" /db_xref=\"GeneID:445693\" /translation=\"...","source":"Ciona intestinalis (vase tunicate)","symbol":"prx1","synonym":"Ci-Rx; Rax","version":"NM_001032511.1"},{"aa_position":[],"accession":"NM_001032479","definition":"Ciona intestinalis En protein (en), mRNA.","division":"RefSeq","geneid":"445653","gi":"","length":"1255","nt_position":[],"snippet":"misc_feature 808..978 /gene=\"en\" /gene_synonym=\"Ci-En\" /note=\"Region: Homeodomain; pfam00046\" /db_xref=\"CDD:459649\" misc_feature 982..1059 /gene=\"en\" /gene_synonym=\"Ci-En\" /note=\"Engrailed homeobox C-terminal signature domain; Region: Engrail_1_C_sig; pfam10525\" /db_xref=\"CDD:431338\" ORIGIN // REFERENCE 1 (bases 1 to 1255) AUTHORS Satou Y, Kawashima T, Shoguchi E, Nakayama A and Satoh N. TITLE An integrated database of the ascidian, Ciona intestinalis: towards functional genomics JOURNAL Zool. Sci. 22 (8), 837-843 (2005) PUBMED 16141696 REFERENCE 2 (bases 1 to 1255) AUTHORS Imai KS, Satoh N...","source":"Ciona intestinalis (vase tunicate)","symbol":"en","synonym":"Ci-En","version":"NM_001032479.1"},{"aa_position":[],"accession":"NM_001032648","definition":"Ciona intestinalis distal-less A (dll-a), mRNA.","division":"RefSeq","geneid":"494410","gi":"","length":"1588","nt_position":[],"snippet":"developmentally relevant genes in Ciona intestinalis JOURNAL Dev. Genes Evol. 213 (5-6), 211-212 (2003) PUBMED 12736827 REFERENCE 4 (bases 1 to 1588) AUTHORS Caracciolo A, Di Gregorio A, Aniello F, Di Lauro R and Branno M. TITLE Identification and developmental expression of three Distal-less homeobox containing genes in the ascidian Ciona intestinalis JOURNAL Mech. Dev. 99 (1-2), 173-176 (2000) PUBMED 11091088...","source":"Ciona intestinalis (vase tunicate)","symbol":"dll-a","synonym":"Ci-Dll-A; Dll","version":"NM_001032648.1"},{"aa_position":[],"accession":"NM_001078492","definition":"Ciona intestinalis transcription factor protein (pou-like), mRNA.","division":"RefSeq","geneid":"778929","gi":"","length":"2230","nt_position":[],"snippet":"misc_feature 296..508 /gene=\"pou-like\" /note=\"Pou domain - N-terminal to homeobox domain; Region: Pou; pfam00157\" /db_xref=\"CDD:459692\" misc_feature <488..1111 /gene=\"pou-like\" /note=\"MAEBL; Provisional; Region: PTZ00121\" /db_xref=\"CDD:173412\" misc_feature <1769..1891 /gene=\"pou-like\" /note=\"Homeodomain; Region: HOX; smart00389\" /db_xref=\"CDD:197696\" exon 279..429 /gene=\"pou-like\" /inference=\"alignment:Splign:2.1.0\" exon 430..523 /gene=\"pou-like\" /inference=\"alignment:Splign:2.1.0\" exon 524..645 /gene=\"pou-like\" /inference=\"alignment:Splign:2.1.0\" exon 646..738 /gene=\"pou-like\" /inference=\"...","source":"Ciona intestinalis (vase tunicate)","symbol":"pou-like","synonym":"","version":"NM_001078492.1"},{"aa_position":[],"accession":"NM_001032649","definition":"Ciona intestinalis Distal-less (dll-c), mRNA.","division":"RefSeq","geneid":"494411","gi":"","length":"1760","nt_position":[],"snippet":"TITLE A cDNA resource from the basal chordate Ciona intestinalis JOURNAL Genesis 33 (4), 153-154 (2002) PUBMED 12203911 REFERENCE 5 (bases 1 to 1760) AUTHORS Caracciolo A, Di Gregorio A, Aniello F, Di Lauro R and Branno M. TITLE Identification and developmental expression of three Distal-less homeobox containing genes in the ascidian Ciona intestinalis JOURNAL Mech. Dev. 99 (1-2), 173-176 (2000) PUBMED 11091088...","source":"Ciona intestinalis (vase tunicate)","symbol":"dll-c","synonym":"","version":"NM_001032649.1"},{"aa_position":[],"accession":"NM_001032595","definition":"Ciona intestinalis LIM homeodomain protein (isl), mRNA.","division":"RefSeq","geneid":"445793","gi":"","length":"1939","nt_position":[],"snippet":"gene 1..1939 /gene=\"isl\" /gene_synonym=\"Ci-isl\" /note=\"LIM homeodomain protein\" /db_xref=\"GeneID:445793\" misc_feature 268..270 /gene=\"isl\" /gene_synonym=\"Ci-isl\" /note=\"upstream in-frame stop codon\" CDS 331..1476 /gene=\"isl\" /gene_synonym=\"Ci-isl\" /function=\"transcription factor\" /note=\"homeobox transcription factor isl\" /codon_start=1 /product=\"LIM homeodomain protein\" /protein_id=\"NP_001027767.1\" /db_xref=\"GeneID:445793\" /translation=\"...","source":"Ciona intestinalis (vase tunicate)","symbol":"isl","synonym":"Ci-isl","version":"NM_001032595.1"}],"summary":[{"count":49,"keyword":"homeobox"},{"count":49,"keyword":"[INTERSECTION]"}],"time":"2026-04-24 20:57:52","version":"GGRNA.v2 : RefSeq release 233 (Jan, 2026)"}