# [ GGRNA.v2 | 2026-03-05 00:37:39 ] # # homeobox 49 # [INTERSECTION] 49 # # accession version gi length symbol synonym geneid division source definition nt_position aa_position NM_001032796 NM_001032796.2 952 LOC100178876 dmbx; DMBX1 100178876 RefSeq Ciona intestinalis (vase tunicate) Ciona intestinalis diencephalon/mesencephalon homeobox protein 1-like (LOC100178876), mRNA. NM_001032517 NM_001032517.2 1788 pitx Ci-Pitx; PITX1 445699 RefSeq Ciona intestinalis (vase tunicate) Ciona intestinalis paired superclass homeobox transcription factor (pitx), mRNA. XM_078630936 XM_078630936.1 526 LOC144745134 144745134 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis homeobox protein BarH-like 1 (LOC144745134), mRNA. XM_078629127 XM_078629127.1 737 LOC100182939 100182939 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis homeobox protein Hox-A7-like (LOC100182939), mRNA. XM_018815634 XM_018815634.3 955 LOC778836 778836 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis homeobox protein not2 (LOC778836), mRNA. XM_078635669 XM_078635669.1 920 LOC778550 778550 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis barH-like 1 homeobox protein (LOC778550), mRNA. XM_004225838 XM_004225838.3 1129 LOC101242509 101242509 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis homeobox protein Hox-D3 (LOC101242509), mRNA. XM_078632327 XM_078632327.1 1013 LOC778699 778699 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis homeobox protein XHOX-7.1 (LOC778699), mRNA. XM_078628407 XM_078628407.1 1169 LOC778552 778552 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis homeobox protein BarH-like 1b (LOC778552), transcript variant X2, mRNA. XM_078628406 XM_078628406.1 1172 LOC778552 778552 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis homeobox protein BarH-like 1b (LOC778552), transcript variant X1, mRNA. XM_026834904 XM_026834904.2 1596 hox13 100169888 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis homeobox transcription factor Hox13 (hox13), mRNA. XM_078637515 XM_078637515.1 1617 hox1 445718 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis homeobox transcription factor Hox1 (hox1), mRNA. XM_078627171 XM_078627171.1 2619 LOC100169897 100169897 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis homeobox transcription factor, LAG1-like 4 (LOC100169897), mRNA. XM_026837825 XM_026837825.2 1431 LOC778665 778665 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx5 (LOC778665), mRNA. XM_002123997 XM_002123997.5 1639 LOC778666 778666 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx9 (LOC778666), mRNA. XM_002119507 XM_002119507.5 1802 LOC778753 778753 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis homeobox protein six1b (LOC778753), mRNA. XM_078634197 XM_078634197.1 3049 titf1 445676 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis homeobox transcription factor TTF1 (titf1), mRNA. XM_078633703 XM_078633703.1 1935 LOC778606 778606 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis homeobox-containing protein 1 (LOC778606), transcript variant X3, mRNA. XM_078633012 XM_078633012.1 1942 pax6 445643 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis homeobox transcription factor Pax6 (pax6), transcript variant X1, mRNA. XM_009861895 XM_009861895.4 2225 pax1/9 445592 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis homeobox transcription factor Pax1/9 (pax1/9), transcript variant X2, mRNA. XM_018813865 XM_018813865.3 2046 pax1/9 445592 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis homeobox transcription factor Pax1/9 (pax1/9), transcript variant X1, mRNA. XM_078633696 XM_078633696.1 1968 LOC778606 778606 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis homeobox-containing protein 1 (LOC778606), transcript variant X2, mRNA. XM_078633690 XM_078633690.1 1971 LOC778606 778606 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis homeobox-containing protein 1 (LOC778606), transcript variant X1, mRNA. XM_009861448 XM_009861448.3 2706 lhx3 778667 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx3a type 1 (lhx3), transcript variant X2, mRNA. XM_026835747 XM_026835747.2 1939 pax6 445643 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis homeobox transcription factor Pax6 (pax6), transcript variant X2, mRNA. XM_078637537 XM_078637537.1 2585 lhx3 778667 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx3a type 1 (lhx3), transcript variant X1, mRNA. XM_009863002 XM_009863002.4 1884 pitx 445699 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis paired superclass homeobox transcription factor (pitx), transcript variant X1, mRNA. XM_018815448 XM_018815448.3 2314 pitx 445699 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis paired superclass homeobox transcription factor (pitx), transcript variant X2, mRNA. NM_001128878 NM_001128878.1 1256 LOC100169897 100169897 RefSeq Ciona intestinalis (vase tunicate) Ciona intestinalis homeobox transcription factor, LAG1-like 4 (LOC100169897), mRNA. XM_078629054 XM_078629054.1 975 LOC100178876 100178876 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis diencephalon/mesencephalon homeobox protein 1-like (LOC100178876), mRNA. NM_001128872 NM_001128872.1 1315 hox13 Ci-Hox13; hox12/13 100169888 RefSeq Ciona intestinalis (vase tunicate) Ciona intestinalis homeobox transcription factor Hox13 (hox13), mRNA. NM_001032495 NM_001032495.1 2297 titf1 Ci-TTF1; TTF1 445676 RefSeq Ciona intestinalis (vase tunicate) Ciona intestinalis homeobox transcription factor TTF1 (titf1), mRNA. XM_026833760 XM_026833760.2 2039 hox2 619238 RefSeq Ciona intestinalis (vase tunicate) PREDICTED: Ciona intestinalis homeobox transcription factor hox2 (hox2), mRNA. NM_001032422 NM_001032422.1 1698 pax1/9 Ci-Pax1/9 445592 RefSeq Ciona intestinalis (vase tunicate) Ciona intestinalis homeobox transcription factor Pax1/9 (pax1/9), mRNA. NM_001078287 NM_001078287.1 2637 lhx3 Ci-Lhx3a; Lhx4 778667 RefSeq Ciona intestinalis (vase tunicate) Ciona intestinalis LIM/homeobox protein Lhx3a type 1 (lhx3), mRNA. NM_001128861 NM_001128861.1 1506 hox1 Ci-Hox1 445718 RefSeq Ciona intestinalis (vase tunicate) Ciona intestinalis homeobox transcription factor Hox1 (hox1), mRNA. NM_001032469 NM_001032469.1 1930 pax6 Ci-Pax6 445643 RefSeq Ciona intestinalis (vase tunicate) Ciona intestinalis homeobox transcription factor Pax6 (pax6), mRNA. NM_001078335 NM_001078335.1 2290 prep 778735 RefSeq Ciona intestinalis (vase tunicate) Ciona intestinalis transcription factor protein (prep), mRNA. NM_001078475 NM_001078475.1 2618 meis 778904 RefSeq Ciona intestinalis (vase tunicate) Ciona intestinalis transcription factor protein (meis), mRNA. NM_001078280 NM_001078280.1 2662 irx-c 778658 RefSeq Ciona intestinalis (vase tunicate) Ciona intestinalis transcription factor protein (irx-c), mRNA. NM_001078279 NM_001078279.1 2230 irx-b 778657 RefSeq Ciona intestinalis (vase tunicate) Ciona intestinalis transcription factor protein (irx-b), mRNA. NM_001078278 NM_001078278.1 2127 irx-a 778656 RefSeq Ciona intestinalis (vase tunicate) Ciona intestinalis transcription factor protein (irx-a), mRNA. NM_001032500 NM_001032500.1 1151 dll-b Ci-Dll-B; DLX3 445682 RefSeq Ciona intestinalis (vase tunicate) Ciona intestinalis distal-less (dll-b), mRNA. NM_001032511 NM_001032511.1 2665 prx1 Ci-Rx; Rax 445693 RefSeq Ciona intestinalis (vase tunicate) Ciona intestinalis Prx1 protein (prx1), mRNA. NM_001032479 NM_001032479.1 1255 en Ci-En 445653 RefSeq Ciona intestinalis (vase tunicate) Ciona intestinalis En protein (en), mRNA. NM_001032648 NM_001032648.1 1588 dll-a Ci-Dll-A; Dll 494410 RefSeq Ciona intestinalis (vase tunicate) Ciona intestinalis distal-less A (dll-a), mRNA. NM_001078492 NM_001078492.1 2230 pou-like 778929 RefSeq Ciona intestinalis (vase tunicate) Ciona intestinalis transcription factor protein (pou-like), mRNA. NM_001032649 NM_001032649.1 1760 dll-c 494411 RefSeq Ciona intestinalis (vase tunicate) Ciona intestinalis Distal-less (dll-c), mRNA. NM_001032595 NM_001032595.1 1939 isl Ci-isl 445793 RefSeq Ciona intestinalis (vase tunicate) Ciona intestinalis LIM homeodomain protein (isl), mRNA.