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2026-10-10 06:56:34, GGRNA : RefSeq release 233 (Jan, 2026)

Summary:

Results:

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Danio rerio claudin e (cldne), mRNA. (1955 bp)
gene_synonym="cb84; cldn28a; fb16e12; wu:fb16e12" /codon_start=1 /product="claudin e" /protein_id="NP_571840.1" /db_xref="GeneID:81584" /db_xref="ZFIN:ZDB-GENE-010328-5" /translation="MVSMCREILGMCLAIIGFLGAIIICALPMWKVTAFIGANIVTAQTIWEGLWMNCVMQSTGQMQCKIYDSLLALPQDLQAARALVVIAIIVSFFALILGIAGGKCTNFVEREDAKAKVSIASGVIFIIAGVLVLVPVCWSANTIIRDFYNPLLTDAQRREMGASLYIGWGVAALLIIGGGILCSSCPPKDEKYNMKYSQPRSTATSRAYV" misc_feature 58..591 /gene="cldne" /gene_synonym="cb84; cldn28a; fb16e12; wu:fb16e12" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" regulatory 1914..1919 /...
Synonym: cb84; cldn28a; fb16e12; wu:fb16e12
NM_131765.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 33b (cldn33b), mRNA. (1029 bp)
EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN // REFERENCE 1 (bases 1 to 1029) AUTHORS Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and Bobe J. TITLE Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database JOURNAL BMC Genomics 17, 368 (2016) PUBMED 27189481 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1029) AUTHORS Baltzegar DA, Reading BJ, Brune ES and Borski RJ. TITLE Phylogenetic revision of the claudin gene...
Synonym: zgc:153311
NM_001045383.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 29 (cldn29), mRNA. (1092 bp)
codon" CDS 22..654 /gene="cldn29" /gene_synonym="zgc:112437" /codon_start=1 /product="claudin 29" /protein_id="NP_001017771.1" /db_xref="GeneID:550468" /db_xref="ZFIN:ZDB-GENE-050417-293" /translation="MASLGMQILGVALSFVGTLGSIITCVLPMWRVTAFIGNNIVTAQMIWEGLWIVCVVQSTGQMQCKLYESMLALEPDLQAARALLVVSILLSILAVLLAVVGGKCTTCIENKSAKARVVVSAGVIFLLSGLLCLTPVCWTAHNTIRDFYNPLLQDAQRRELGAALYTGWGSAGLMLIGGAILCCQCPAKDQRAFVAKYPAPKSNGSDKEFV" misc_feature 34..564 /gene="cldn29" /gene_synonym="zgc:112437" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN // REFERENCE 1...
Synonym: zgc:112437
NM_001017771.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 30 (cldn30), mRNA. (2025 bp)
LOCUS NM_001040360 2025 bp mRNA linear VRT 28-DEC-2020 DEFINITION Danio rerio claudin 30 (cldn30), mRNA. ACCESSION NM_001040360 VERSION NM_001040360.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii...inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 109..642 /gene="cldn30" /gene_synonym="zgc:136892" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN // REFERENCE 1 (bases 1 to 2025) AUTHORS Elkon R, Milon B, Morrison L, Shah M...
Synonym: zgc:136892
NM_001040360.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 8.1 (cldn8.1), mRNA. (1880 bp)
fa01e05; zgc:91900" /note="claudin 8" /codon_start=1 /product="claudin-8" /protein_id="NP_001003733.1" /db_xref="GeneID:445278" /db_xref="ZFIN:ZDB-GENE-011018-1" /translation="MASGALEIVGMCVTIIGLIGVSASTGMPMWRVTAFIGENIIVMETRYEGLWMNCYRQANIRMQCKVYDSLLALTPDLQAARGLMCTSVALTGVGLLIAIVGMKCTACIQDNDRAKRMVLIISGCMILAGCFCCLIPVSWTGNAIIRDFYNPLLIDAQRRELGEALYIGWVSSAFLFAGGCIFICCSGSLDKGPDPKYMYSRNAPAPYVAYQPQPVAYHPQPRSVYSPSGPPSFIEQSYQPSRQQSFIQPSRQQSFIQPSRHPSARSAVAYL" misc_feature 32..565 /gene="cldn8.1" /gene_synonym="cldn8; cldn8b; wu:fa01e05; zgc:91900" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin...
Synonym: cldn8; cldn8b; wu:fa01e05; zgc:91900
NM_001003733.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 15b (cldn15b), mRNA. (2208 bp)
product="claudin-15b precursor" /protein_id="NP_001035404.1" /db_xref="GeneID:678556" /db_xref="ZFIN:ZDB-GENE-060421-7652" /translation="MQNILQIFALLLGFLGCGSAVLSLYNHYWKVSTDDDSVIITSNIFENLWMSCADDSSGTFSCRDFQSLLALPGYIQACRALIITSIVLGTFGLVATLVGMQCFKIGGGNYIMKSRIAGAGGVFFILQGLCTMTAVSWYAFNITQEFFDPLYPGIKYEIGEGLYIGWSSATLALCSGSCLLCSCGLCTPMGKKSFRQSHLQDFRSSHQPQSINIVPTVSTTSHYLSRQYV" sig_peptide 166..225 /gene="cldn15b" /gene_synonym="zgc:136755" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 193..693 /gene="cldn15b" /gene_synonym="zgc:136755" /note="PMP-22/EMP/MP20/Claudin family;...
Synonym: zgc:136755
NM_001040314.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 3d (cldn3d), mRNA. (1863 bp)
stop codon" CDS 316..972 /gene="cldn3d" /gene_synonym="cldnc" /note="claudin c" /codon_start=1 /product="claudin 3d" /protein_id="NP_571839.1" /db_xref="GeneID:81582" /db_xref="ZFIN:ZDB-GENE-010328-3" /translation="MASFGLELVGVTLSVLGWILNIVCCALPMWRVTAFIGTNIVTAQVYWEGIWMSCVVQSTGQMQCKVYDSMLALPADLQAARALVVVAIIVGVLALFVAIVGAKCTNCIEEEAAKARVMISSGAAFITASVLQLIPVCWSAHTVILEFYSPLVPEAQKMEIGASLYLGWAASAMLLVGGSILCCSCPPKDETRYPPQSRIAYSAHHSVAPSTYNKRDYV" misc_feature 328..858 /gene="cldn3d" /gene_synonym="cldnc" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...
Synonym: cldnc
NM_131764.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin k (cldnk), mRNA. (1270 bp)
gene="cldnk" /gene_synonym="cldn31a; zgc:91878" /note="claudin 31" /codon_start=1 /product="claudin k" /protein_id="NP_001003464.1" /db_xref="GeneID:445070" /db_xref="ZFIN:ZDB-GENE-040801-201" /translation="MATTGMQLLGLVLSIIGLVGGFLVCTLPMWRVTAFIGNNIVTAQITWEGLWMNCIWQSTGEIQCKGYDSLLALPSDMKAARGLTVLAILICSLSLTLGILGIKCTECVGLPSLKARLARVSGVLFVIAGFLILVPVCWTAHSIIRDFYDPYVAAPHKRELGPALYLGWGASALLLIGGSLLYAGSNPPGIPSSPTFSSDESSPRRAGGSSQVKGYV" misc_feature 380..913 /gene="cldnk" /gene_synonym="cldn31a; zgc:91878" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...
Synonym: cldn31a; zgc:91878
NM_001003464.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 19 (cldn19), mRNA. (1461 bp)
codon" CDS 104..733 /gene="cldn19" /gene_synonym="zgc:112141" /codon_start=1 /product="claudin-19" /protein_id="NP_001017736.1" /db_xref="GeneID:550431" /db_xref="ZFIN:ZDB-GENE-050417-242" /translation="MANSGFQLLGYFLALGGWIGIISTTVLPQWKQSSYAGDAIIMAVGLYEGLWMSCASQSTGQVQCKIFDSLLSLDVNIQTCRALMVISVLMGFMGIIVSVVGMKCTKVGDNNPSTKSKIAISGGSLFLLSGVCTLVAVSWYAAQVSAHFFDPNTPTNAKYDFGTALFVGWAASVLMMLGGAFLCCSCINEDRRGQQFYRQSQPSTTREYV" misc_feature 113..649 /gene="cldn19" /gene_synonym="zgc:112141" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" exon 327..491 /gene="...
Synonym: zgc:112141
NM_001017736.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio transmembrane protein 178Ba (tmem178ba), mRNA. (1163 bp)
sig_peptide 43..123 /gene="tmem178ba" /gene_synonym="zgc:194665; zgc:194696" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 343..843 /gene="tmem178ba" /gene_synonym="zgc:194665; zgc:194696" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" exon 425..541 /gene="tmem178ba" /gene_synonym="zgc:194665; zgc:194696" /inference="alignment:Splign:2.1.0" exon 542..679 /gene="tmem178ba" /gene_synonym="zgc:194665; zgc:194696" /inference="alignment:Splign:2.1.0" exon 680..1163 /gene="tmem178ba" /gene_synonym="zgc:194665; zgc:194696" /...
Synonym: zgc:194665; zgc:194696
NM_001128746.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio lens intrinsic membrane protein 2.3 (lim2.3), mRNA. (781 bp)
ZDB-GENE-040718-327" /translation="MYSFMGGGLFCAGVGNILLVISTATDYWMQYRQSSSYMHQGLWRYCVPGKCMTHTDSIAYWDATRAFMILATLACFFGMIIGVMAFINYSSFTGFDRTFAAGILYFISCFFVLLAMAVYTGMTVNYYGKRYGNWRFSWSYIMGWVSVVLTFFSGIFYMCAYRMHEPRGPMSR" misc_feature 120..590 /gene="lim2.3" /gene_synonym="zgc:92719" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" exon 295..444 /gene="lim2.3" /gene_synonym="zgc:92719" /inference="alignment:Splign:2.1.0" exon 445..579 /gene="lim2.3" /gene_synonym="zgc:92719" /inference="alignment:Splign:2.1.0" exon 580..757 /gene="lim2.3" /gene_synonym="zgc...
Synonym: zgc:92719
NM_001002587.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio calcium channel, voltage-dependent, gamma subunit 1a (cacng1a), mRNA. (2282 bp)
misc_feature 199..753 /gene="cacng1a" /gene_synonym="cacng1; wu:fb43f02; wu:fi19g08; zgc:55364" /note="PMP-22/EMP/MP20/Claudin tight junction; Region: Claudin_2; pfam13903" /db_xref="CDD:372799" exon 392..466 /gene="cacng1a" /gene_synonym="cacng1; wu:fb43f02; wu:fi19g08; zgc:55364" /inference="alignment:Splign:2.1.0" exon 467..604 /gene="cacng1a" /gene_synonym="cacng1; wu:fb43f02; wu:fi19g08; zgc:55364" /inference="alignment:Splign:2.1.0" exon 605..2261 /gene="cacng1a" /gene_synonym="cacng1; wu:fb43f02; wu:fi19g08; zgc:55364" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1...
Synonym: cacng1; wu:fb43f02; wu:fi19g08; zgc:55364
NM_214684.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio septin 5b (septin5b), mRNA. (1216 bp)
PUBMED 36855298 REFERENCE 3 (bases 1 to 1216) AUTHORS van Leeuwen,L.M., Evans,R.J., Jim,K.K., Verboom,T., Fang,X., Bojarczuk,A., Malicki,J., Johnston,S.A. and van der Sar,A.M. TITLE A transgenic zebrafish model for the in vivo study of the blood and choroid plexus brain barriers using claudin 5 JOURNAL Biol Open 7 (2) (2018) PUBMED 29437557 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 1216) AUTHORS Bayes,A., Collins,M.O., Reig-Viader,R., Gou,G., Goulding,D., Izquierdo,A., Choudhary,J.S., Emes,R.D. and Grant,S.G. TITLE Evolution of complexity in the zebrafish synapse proteome...
Synonym: sept5b; zgc:100950
NM_001003782.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio septin 5a (septin5a), mRNA. (1743 bp)
PUBMED 36855298 REFERENCE 3 (bases 1 to 1743) AUTHORS van Leeuwen,L.M., Evans,R.J., Jim,K.K., Verboom,T., Fang,X., Bojarczuk,A., Malicki,J., Johnston,S.A. and van der Sar,A.M. TITLE A transgenic zebrafish model for the in vivo study of the blood and choroid plexus brain barriers using claudin 5 JOURNAL Biol Open 7 (2) (2018) PUBMED 29437557 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 1743) AUTHORS Bayes,A., Collins,M.O., Reig-Viader,R., Gou,G., Goulding,D., Izquierdo,A., Choudhary,J.S., Emes,R.D. and Grant,S.G. TITLE Evolution of complexity in the zebrafish synapse proteome...
Synonym: fj37h04; sept5; sept5a; wu:fj37h04; zgc:73218
NM_199988.1 - Danio rerio (zebrafish) - NCBI - UCSC

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Redirect URI : https://172.18.8.233:20082/en/dr/claudin
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0.000 | 0.000 | search_start;
0.127 | 0.127 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:claudin)%7C(nt:claudin)%7C(aa:claudin))?source=Danio rerio (zebrafish)?to=0&format=json
0.184 | 0.057 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:claudin)%7C(nt:claudin)%7C(aa:claudin))?source=Danio rerio (zebrafish)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.186 | 0.002 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]