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Previous release (v1)
2024-04-20 01:07:30, GGRNA : RefSeq release 222 (Jan, 2024)
Summary:
Results:
Matches are highlighted with green background.
Overlapping matches are dark colored.
misc_feature 1097..1375 /gene="wago-10" /locus_tag="CELE_T22H9.3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1178..1180,1223..1225,1256..1258,1268..1270, 1322..1324,1343..1345,1349..1351) /gene="wago-10" /locus_tag="CELE_T22H9.3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /...
misc_feature 223..615 /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 643..819 /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 820..1185 /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,...
misc_feature 168..560 /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 588..764 /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 765..1130 /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,...
misc_feature 474..866 /gene="alg-1" /locus_tag="CELE_F48F7.1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 894..1133 /gene="alg-1" /locus_tag="CELE_F48F7.1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1134..1499 /gene="alg-1" /locus_tag="CELE_F48F7.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,...
misc_feature 508..900 /gene="alg-1" /locus_tag="CELE_F48F7.1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 928..1167 /gene="alg-1" /locus_tag="CELE_F48F7.1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1168..1533 /gene="alg-1" /locus_tag="CELE_F48F7.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,...
misc_feature 982..1314 /gene="wago-1" /locus_tag="CELE_R06C7.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1123..1125,1168..1170,1198..1200,1210..1212, 1264..1266,1285..1287,1291..1293) /gene="wago-1" /locus_tag="CELE_R06C7.1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_...
misc_feature 781..915 /gene="alg-3" /locus_tag="CELE_T22B3.2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1108..1440 /gene="alg-3" /locus_tag="CELE_T22B3.2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order...
misc_feature 848..982 /gene="alg-3" /locus_tag="CELE_T22B3.2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1175..1507 /gene="alg-3" /locus_tag="CELE_T22B3.2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order...
misc_feature 225..2717 /gene="wago-4" /locus_tag="CELE_F58G1.1" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 972..1304 /gene="wago-4" /locus_tag="CELE_F58G1.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order...
misc_feature 476..721 /gene="alg-4" /locus_tag="CELE_ZK757.3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 800..934 /gene="alg-4" /locus_tag="CELE_ZK757.3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1136..1468 /gene="alg-4" /locus_tag="CELE_ZK757.3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,...
misc_feature 504..749 /gene="alg-4" /locus_tag="CELE_ZK757.3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 828..962 /gene="alg-4" /locus_tag="CELE_ZK757.3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1164..1496 /gene="alg-4" /locus_tag="CELE_ZK757.3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,...
misc_feature 866..1285 /gene="rde-1" /locus_tag="CELE_K08H10.7" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1073..1075,1118..1120,1169..1171,1181..1183, 1232..1234,1253..1255,1259..1261) /gene="rde-1" /locus_tag="CELE_K08H10.7" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_...
LOCUS NM_001383707 3105 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Protein argonaute-2 (alg-5), mRNA. ACCESSION NM_001383707 VERSION NM_001383707.1 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa;...misc_feature 657..842 /gene="alg-5" /locus_tag="CELE_T23D8.7" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 915..1262 /gene="alg-5" /locus_tag="CELE_T23D8.7" /note="PAZ domain; Region: PAZ; pfam02170" /db_xref="CDD:426635" misc_feature order...
misc_feature 1172..1516 /gene="nrde-3" /locus_tag="CELE_R04A9.2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1310..1312,1355..1357,1397..1399,1409..1411, 1463..1465,1484..1486,1490..1492) /gene="nrde-3" /locus_tag="CELE_R04A9.2" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db...
misc_feature 887..1240 /gene="ppw-1" /locus_tag="CELE_C18E3.7" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1043..1045,1085..1087,1121..1123,1133..1135, 1187..1189,1208..1210,1214..1216) /gene="ppw-1" /locus_tag="CELE_C18E3.7" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_...
misc_feature 889..1221 /gene="wago-5" /locus_tag="CELE_ZK1248.7" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1030..1032,1075..1077,1105..1107,1117..1119, 1171..1173,1192..1194,1198..1200) /gene="wago-5" /locus_tag="CELE_ZK1248.7" /note="nucleic acid-binding interface [nucleotide binding]; other site" /...
misc_feature 814..1167 /gene="sago-2" /locus_tag="CELE_F56A6.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(970..972,1012..1014,1048..1050,1060..1062, 1114..1116,1135..1137,1141..1143) /gene="sago-2" /locus_tag="CELE_F56A6.1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_...
misc_feature 1171..1446 /gene="hrde-1" /locus_tag="CELE_C16C10.3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1243..1245,1288..1290,1327..1329,1339..1341, 1393..1395,1414..1416,1420..1422) /gene="hrde-1" /locus_tag="CELE_C16C10.3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /...
misc_feature 861..1214 /gene="sago-2" /locus_tag="CELE_F56A6.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1017..1019,1059..1061,1095..1097,1107..1109, 1161..1163,1182..1184,1188..1190) /gene="sago-2" /locus_tag="CELE_F56A6.1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_...
misc_feature 829..1182 /gene="ppw-1" /locus_tag="CELE_C18E3.7" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(985..987,1027..1029,1063..1065,1075..1077, 1129..1131,1150..1152,1156..1158) /gene="ppw-1" /locus_tag="CELE_C18E3.7" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref...
misc_feature 592..1002 /gene="csr-1" /locus_tag="CELE_F20D12.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(802..804,847..849,865..867,898..900,949..951, 970..972,976..978) /gene="csr-1" /locus_tag="CELE_F20D12.1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD...
misc_feature 1156..1566 /gene="csr-1" /locus_tag="CELE_F20D12.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1366..1368,1411..1413,1429..1431,1462..1464, 1513..1515,1534..1536,1540..1542) /gene="csr-1" /locus_tag="CELE_F20D12.1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db...
Data Export:
Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.
Debug Info:
Redirect URI : http://ggrna.dbcls.jp/ce/Argonaute+%22PAZ+domain%22
lang : en |
div : |
spe : ce |
query_string : Argonaute "PAZ domain" |
format : html |
download :
0.000 | 0.000 | search_start;
0.076 | 0.076 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?source=Caenorhabditis elegans?to=0&format=json
0.084 | 0.008 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Caenorhabditis elegans?to=0&format=json
0.161 | 0.077 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))%26((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Caenorhabditis elegans?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.165 | 0.004 | cgi_end;
GGRNA ver.2 by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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