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Previous release (v1)
2024-05-02 23:04:20, GGRNA : RefSeq release 222 (Jan, 2024)
Summary:
Results:
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LOCUS NM_075351 619 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans PAZ domain-containing protein (F55C9.3), partial mRNA. ACCESSION NM_075351 VERSION NM_075351.2 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003283). On Sep 4, 2019...
LOCUS NM_070547 647 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans PAZ domain-containing protein (C35D6.3), mRNA. ACCESSION NM_070547 VERSION NM_070547.3 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003282). On May 27, 2020 this...
LOCUS NM_001373227 1174 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans PAZ domain-containing protein (F19G12.3), mRNA. ACCESSION NM_001373227 VERSION NM_001373227.2 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003284). On May...
LOCUS NM_070776 3217 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans PAZ domain-containing protein (wago-10), mRNA. ACCESSION NM_070776 VERSION NM_070776.5 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003283). On May 27, 2020 this...
misc_feature 982..1314 /gene="wago-1" /locus_tag="CELE_R06C7.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1123..1125,1168..1170,1198..1200,1210..1212, 1264..1266,1285..1287,1291..1293) /gene="wago-1" /locus_tag="CELE_R06C7.1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_...
misc_feature 1172..1516 /gene="nrde-3" /locus_tag="CELE_R04A9.2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1310..1312,1355..1357,1397..1399,1409..1411, 1463..1465,1484..1486,1490..1492) /gene="nrde-3" /locus_tag="CELE_R04A9.2" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db...
misc_feature 887..1240 /gene="ppw-1" /locus_tag="CELE_C18E3.7" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1043..1045,1085..1087,1121..1123,1133..1135, 1187..1189,1208..1210,1214..1216) /gene="ppw-1" /locus_tag="CELE_C18E3.7" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_...
misc_feature 889..1221 /gene="wago-5" /locus_tag="CELE_ZK1248.7" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1030..1032,1075..1077,1105..1107,1117..1119, 1171..1173,1192..1194,1198..1200) /gene="wago-5" /locus_tag="CELE_ZK1248.7" /note="nucleic acid-binding interface [nucleotide binding]; other site" /...
misc_feature 814..1167 /gene="sago-2" /locus_tag="CELE_F56A6.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(970..972,1012..1014,1048..1050,1060..1062, 1114..1116,1135..1137,1141..1143) /gene="sago-2" /locus_tag="CELE_F56A6.1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_...
misc_feature 1171..1446 /gene="hrde-1" /locus_tag="CELE_C16C10.3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1243..1245,1288..1290,1327..1329,1339..1341, 1393..1395,1414..1416,1420..1422) /gene="hrde-1" /locus_tag="CELE_C16C10.3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /...
misc_feature 861..1214 /gene="sago-2" /locus_tag="CELE_F56A6.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1017..1019,1059..1061,1095..1097,1107..1109, 1161..1163,1182..1184,1188..1190) /gene="sago-2" /locus_tag="CELE_F56A6.1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_...
misc_feature 225..2717 /gene="wago-4" /locus_tag="CELE_F58G1.1" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 972..1304 /gene="wago-4" /locus_tag="CELE_F58G1.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order...
misc_feature 829..1182 /gene="ppw-1" /locus_tag="CELE_C18E3.7" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(985..987,1027..1029,1063..1065,1075..1077, 1129..1131,1150..1152,1156..1158) /gene="ppw-1" /locus_tag="CELE_C18E3.7" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref...
misc_feature 592..1002 /gene="csr-1" /locus_tag="CELE_F20D12.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(802..804,847..849,865..867,898..900,949..951, 970..972,976..978) /gene="csr-1" /locus_tag="CELE_F20D12.1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD...
misc_feature 866..1285 /gene="rde-1" /locus_tag="CELE_K08H10.7" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1073..1075,1118..1120,1169..1171,1181..1183, 1232..1234,1253..1255,1259..1261) /gene="rde-1" /locus_tag="CELE_K08H10.7" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_...
terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 800..934 /gene="alg-4" /locus_tag="CELE_ZK757.3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1136..1468 /gene="alg-4" /locus_tag="CELE_ZK757.3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...
terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 828..962 /gene="alg-4" /locus_tag="CELE_ZK757.3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1164..1496 /gene="alg-4" /locus_tag="CELE_ZK757.3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...
misc_feature 1156..1566 /gene="csr-1" /locus_tag="CELE_F20D12.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1366..1368,1411..1413,1429..1431,1462..1464, 1513..1515,1534..1536,1540..1542) /gene="csr-1" /locus_tag="CELE_F20D12.1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db...
terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 643..819 /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 820..1185 /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...
terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 588..764 /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 765..1130 /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...
misc_feature 781..915 /gene="alg-3" /locus_tag="CELE_T22B3.2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1108..1440 /gene="alg-3" /locus_tag="CELE_T22B3.2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order...
misc_feature 848..982 /gene="alg-3" /locus_tag="CELE_T22B3.2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1175..1507 /gene="alg-3" /locus_tag="CELE_T22B3.2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order...
domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 894..1133 /gene="alg-1" /locus_tag="CELE_F48F7.1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1134..1499 /gene="alg-1" /locus_tag="CELE_F48F7.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...
domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 928..1167 /gene="alg-1" /locus_tag="CELE_F48F7.1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1168..1533 /gene="alg-1" /locus_tag="CELE_F48F7.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...
ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 1718..1999 /gene="dcr-1" /locus_tag="CELE_K12H4.8" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 2513..2875 /gene="dcr-1" /locus_tag="CELE_K12H4.8" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD...
misc_feature 657..842 /gene="alg-5" /locus_tag="CELE_T23D8.7" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 915..1262 /gene="alg-5" /locus_tag="CELE_T23D8.7" /note="PAZ domain; Region: PAZ; pfam02170" /db_xref="CDD:426635" misc_feature order(999..1001,1044..1046,1092..1094,1104..1106, 1158..1160,1176..1178,1182..1184) /gene="alg-5" /locus_tag="CELE_T23D8.7" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1344..2645 /gene="alg-5" /locus_tag="CELE_T23D8.7" /note="PIWI domain, Argonaute-...
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Redirect URI : http://ggrna.dbcls.jp/ce/%22PAZ+domain%22
lang : en |
div : |
spe : ce |
query_string : "PAZ domain" |
format : html |
download :
0.000 | 0.000 | search_start;
0.082 | 0.082 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Caenorhabditis elegans?to=0&format=json
0.141 | 0.059 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Caenorhabditis elegans?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.144 | 0.003 | cgi_end;
GGRNA ver.2 by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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