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2025-04-20 03:20:08, GGRNA : RefSeq release 229 (Mar, 2025)
Summary:
Results:
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single sample supports all introns SAMD00028290, SAMD00028291 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..3687 /organism="Xenopus tropicalis" /mol_type="mRNA" /db_xref="taxon:8364" /chromosome="6" /map="6" gene 1..3687 /gene="ago2" /gene_synonym="Argonaute2; eif2c2" /note="argonaute 2, RISC catalytic component" /db_xref="GeneID:448205" /db_xref="Xenbase:XB-GENE-1001916" exon 1..260 /gene="ago2" /gene_synonym="Argonaute2; eif2c2" /inference="alignment:Splign:2.1.0" misc_feature 122..124 /gene="ago2" /gene_synonym="Argonaute2; eif2c2" /note="upstream in-frame stop...
Synonym:
Argonaute2; eif2c2
NM_001004877.1 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
END## FEATURES Location/Qualifiers source 1..5660 /organism="Xenopus tropicalis" /mol_type="mRNA" /strain="Nigerian" /db_xref="taxon:8364" /chromosome="6" /sex="female" /tissue_type="liver and blood" /dev_stage="adult" /note="F17 inbred" gene 1..5660 /gene="ago2" /gene_synonym="Argonaute2; eif2c2" /note="argonaute 2, RISC catalytic component; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 68 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 102 samples with...
Synonym:
Argonaute2; eif2c2
XM_012964517.3 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
misc_feature 145..534 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 565..717 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 718..1080 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...
XM_004911574.4 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
misc_feature 145..534 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 565..717 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 718..1080 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...
XM_012957371.3 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
misc_feature 151..540 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 571..723 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 724..1086 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...
XM_012957370.3 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
misc_feature 1162..1446 /gene="ago3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 1474..1626 /gene="ago3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1627..1989 /gene="ago3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...
XM_002936224.5 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
misc_feature 1163..1447 /gene="ago3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 1475..1627 /gene="ago3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1628..1990 /gene="ago3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...
XM_004911571.4 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
misc_feature 217..606 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 637..789 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 790..1152 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...
XM_002938838.5 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
misc_feature 218..607 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 638..790 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 791..1153 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...
XM_012957367.3 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
misc_feature 230..619 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 650..802 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 803..1165 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...
XM_004911573.4 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
misc_feature 231..620 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 651..803 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 804..1166 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...
XM_004911572.4 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
misc_feature 19..2652 /gene="ago4" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1216..2529 /gene="ago4" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1633..1635,1645..1647,1681..1692,1699..1701, 1723..1725,1732..1734,1744..1746,1756..1758) /gene="ago4" /note...
XM_012957369.3 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
misc_feature 212..604 /gene="ago1" /gene_synonym="eif2c; eif2c1; gerp95" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 632..784 /gene="ago1" /gene_synonym="eif2c; eif2c1; gerp95" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 785..1147 /gene="ago1" /gene_synonym="eif2c; eif2c1; gerp95" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been...
Synonym: eif2c; eif2c1; gerp95
NM_001317215.1 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
SAM:MobiDB-lite" misc_feature <83..613 /gene="piwil2" /gene_synonym="ct80; hili; mili; piwil1l; xili" /note="large tegument protein UL36; Provisional; Region: PHA03247" /db_xref="CDD:223021" misc_feature 1022..1165 /gene="piwil2" /gene_synonym="ct80; hili; mili; piwil1l; xili" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1169..1582 /gene="piwil2" /gene_synonym="ct80; hili; mili; piwil1l; xili" /note="This domain is named PAZ after the proteins Piwi Argonaut and Zwille; Region: PAZ; smart00949" /db_xref="CDD:198017" misc_feature order...
Synonym: ct80; hili; mili; piwil1l; xili
NM_001112999.1 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
misc_feature 726..869 /gene="piwil4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 873..1289 /gene="piwil4" /note="This domain is named PAZ after the proteins Piwi Argonaut and Zwille; Region: PAZ; smart00949" /db_xref="CDD:198017" misc_feature order(1005..1007,1044..1046,1068..1070,1080..1082, 1134..1136,1182..1184,1188..1190) /gene="piwil4" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239211" misc_feature 1245..2570 /gene="piwil4" /note="PIWI domain, Piwi-like subfamily found in eukaryotes. This domain...
XM_012958238.2 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
misc_feature 3213..3560 /gene="tnrc6b" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 4500..5321 /gene="tnrc6b" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 5325..5573 /gene="tnrc6b" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" ORIGIN //...
XM_012961481.3 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
misc_feature 3335..3682 /gene="tnrc6b" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 4622..5443 /gene="tnrc6b" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 5447..5695 /gene="tnrc6b" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" ORIGIN //...
XM_002934209.5 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
misc_feature 3330..3677 /gene="tnrc6b" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 4617..5438 /gene="tnrc6b" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 5442..5690 /gene="tnrc6b" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" ORIGIN //...
XM_012961478.3 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
misc_feature 3309..3656 /gene="tnrc6b" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 4596..5417 /gene="tnrc6b" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 5421..5669 /gene="tnrc6b" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" ORIGIN //...
XM_012961477.3 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
misc_feature 1935 /gene="tnrc6a" /note="serine-rich protein; Region: ser_rich_anae_1; NF033849" /db_xref="CDD:468206" misc_feature 3070..3420 /gene="tnrc6a" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 4300..5118 /gene="tnrc6a" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 5104..5379 /gene="tnrc6a" /note="RNA recognition motif (RRM) superfamily; Region: RRM_SF; cl17169" /db_xref="CDD:473069" ORIGIN //...
XM_031893835.1 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
misc_feature 653..>1726 /gene="tnrc6b" /note="transcriptional regulator ICP4; Provisional; Region: PHA03307" /db_xref="CDD:223039" misc_feature 3170..3517 /gene="tnrc6b" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 4283..5104 /gene="tnrc6b" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 5108..5356 /gene="tnrc6b" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" ORIGIN //...
XM_031901083.1 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
misc_feature 653..>1726 /gene="tnrc6b" /note="transcriptional regulator ICP4; Provisional; Region: PHA03307" /db_xref="CDD:223039" misc_feature 3170..3517 /gene="tnrc6b" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 4286..5107 /gene="tnrc6b" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 5111..5359 /gene="tnrc6b" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" ORIGIN //...
XM_031901082.1 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
misc_feature 653..>1726 /gene="tnrc6b" /note="transcriptional regulator ICP4; Provisional; Region: PHA03307" /db_xref="CDD:223039" misc_feature 3170..3517 /gene="tnrc6b" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 4454..5275 /gene="tnrc6b" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 5279..5527 /gene="tnrc6b" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" ORIGIN //...
XM_031901081.1 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
misc_feature 653..>1726 /gene="tnrc6b" /note="transcriptional regulator ICP4; Provisional; Region: PHA03307" /db_xref="CDD:223039" misc_feature 3170..3517 /gene="tnrc6b" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 4457..5278 /gene="tnrc6b" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 5282..5530 /gene="tnrc6b" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" ORIGIN //...
XM_031901080.1 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
misc_feature 3478..3813 /gene="tnrc6c" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 3820..3933 /gene="tnrc6c" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 4087..4749 /gene="tnrc6c" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4705..5457 /gene="tnrc6c" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 5437..5700 /gene="tnrc6c" /note="...
XM_031894616.1 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
misc_feature 3479..3814 /gene="tnrc6c" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 3821..3934 /gene="tnrc6c" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 4088..4771 /gene="tnrc6c" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4796..5569 /gene="tnrc6c" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 5549..5812 /gene="tnrc6c" /note="...
XM_031894615.1 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
misc_feature <76..627 /gene="piwil2" /gene_synonym="ct80; hili; mili; piwil1l; xili" /note="large tegument protein UL36; Provisional; Region: PHA03247" /db_xref="CDD:223021" misc_feature 1036..1179 /gene="piwil2" /gene_synonym="ct80; hili; mili; piwil1l; xili" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1183..1596 /gene="piwil2" /gene_synonym="ct80; hili; mili; piwil1l; xili" /note="This domain is named PAZ after the proteins Piwi Argonaut and Zwille; Region: PAZ; smart00949" /db_xref="CDD:198017" misc_feature order...
Synonym: ct80; hili; mili; piwil1l; xili
XM_012958498.3 -
Xenopus tropicalis (tropical clawed frog) -
NCBI -
UCSC -
Xenbase
Data Export:
下記より最大10000件まで検索結果を取得できます。
Debug Info:
Redirect URI : https://ggrna.dbcls.jp/ja/xt/Argonaute
lang : ja |
div : |
spe : xt |
query_string : Argonaute |
format : html |
download :
0.000 | 0.000 | search_start;
0.084 | 0.084 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?source=Xenopus tropicalis (tropical clawed frog)?to=0&format=json
0.148 | 0.063 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?source=Xenopus tropicalis (tropical clawed frog)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.151 | 0.003 | cgi_end;
GGRNA ver.2 by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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