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2024-03-29 09:56:13, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Danio rerio argonaute RISC catalytic component 3a (ago3a), mRNA. (3683 bp)
misc_feature 906..1190 /gene="ago3a" /gene_synonym="eif2c1; eif2c3a; sb:eu275; sb:eu416" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1218..1370 /gene="ago3a" /gene_synonym="eif2c1; eif2c3a; sb:eu275; sb:eu416" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1371..1733 /gene="ago3a" /gene_synonym="eif2c1; eif2c3a; sb:eu275; sb:eu416" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the...
Synonym: eif2c1; eif2c3a; sb:eu275; sb:eu416
NM_001423197.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio argonaute RISC catalytic component 3b (ago3b), mRNA. (3062 bp)
misc_feature 696..980 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1008..1160 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1161..1523 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced...
Synonym: ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3
NM_001160028.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio argonaute RISC component 4 (ago4), mRNA. (2729 bp)
misc_feature 205..594 /gene="ago4" /gene_synonym="eif2c4; fd14f04; wu:fd14f04" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 625..777 /gene="ago4" /gene_synonym="eif2c4; fd14f04; wu:fd14f04" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 778..1140 /gene="ago4" /gene_synonym="eif2c4; fd14f04; wu:fd14f04" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The...
Synonym: eif2c4; fd14f04; wu:fd14f04
NM_001252559.2 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio argonaute RISC catalytic component 3b (ago3b), transcript variant X1, mRNA. (8295 bp)
misc_feature 990..1274 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1302..1454 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1455..1817 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced...
Synonym: ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3
XM_005159456.3 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio argonaute RISC catalytic component 2 (ago2), transcript variant X1, mRNA. (9864 bp)
misc_feature 681..905 /gene="ago2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 933..1085 /gene="ago2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1086..1448 /gene="ago2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...
XM_009294368.3 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio protein argonaute-3 (LOC567622), transcript variant X1, mRNA. (3673 bp)
misc_feature 918..1202 /gene="LOC567622" /gene_synonym="ago3a; eif2c1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1230..1382 /gene="LOC567622" /gene_synonym="ago3a; eif2c1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1383..1745 /gene="LOC567622" /gene_synonym="ago3a; eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named...
Synonym: ago3a; eif2c1
XM_009292707.3 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio argonaute RISC catalytic component 2 (ago2), mRNA. (2941 bp)
misc_feature 518..742 /gene="ago2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 770..922 /gene="ago2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 923..1285 /gene="ago2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...
NM_001302222.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio protein argonaute-3 (LOC567622), mRNA. (3075 bp)
misc_feature 443..727 /gene="LOC567622" /gene_synonym="ago3a; eif2c1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 755..907 /gene="LOC567622" /gene_synonym="ago3a; eif2c1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 908..1270 /gene="LOC567622" /gene_synonym="ago3a; eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named...
Synonym: ago3a; eif2c1
NM_001302232.1 - Danio rerio (zebrafish) - NCBI - UCSC

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/dr/Argonaute+%22PAZ+domain%22
lang : en | div : | spe : dr | query_string : Argonaute "PAZ domain" | format : html | download :

0.000 | 0.000 | search_start;
0.099 | 0.098 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?source=Danio rerio (zebrafish)?to=0&format=json
0.122 | 0.024 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Danio rerio (zebrafish)?to=0&format=json
2.621 | 2.499 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))%26((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Danio rerio (zebrafish)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
2.623 | 0.002 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]