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Previous release (v1)
2024-11-09 22:35:44, GGRNA : RefSeq release 226 (Sep, 2024)
Summary:
Results:
Matches are highlighted with green background.
Overlapping matches are dark colored.
tccacggaaaatgaaattaccaatacgagtaatcaaacagcaaacatagtaattgatccaggaagtattgattcagaagaaataaacaaattagccgcaaaattagttgaagaatcaattctcaaagcatcacaggaagcagcatcagataaccacgagaaagaaagatcaagtgcaacatcaaaagctgattatgaaagatcatttgatcaagacgtcacttatgaaagatcttcaccgttgcttgaaccaagtgaagaaccagtgatggaatccaaagaaccagaactgacacaagaagagattgatcacattgcaaggatccagagtcttgcagaacaatcatcattcgaacaagcttcaacgattcctgatcgaccacctcttccagcccggcttccgactgtagacgagccgattgtcatctcagaacaacacgaagaagacagatcaagtgcaacatcgggagctgactatgaaagatccttcgatcaagaagtcacgtatgaaagatcttcaccgttgcttgaaccatgtgaagaaccagtgatggaatccaaagaaccagaactgacacaagaagagattgatcatattgca...
position 1741
tccacggaaaatgaaattaccaatacgagtaatcaaacagcaaacatagtaattgatccaggaagtattgattcagaagaaataaacaaattagccgcaaaattagttgaagaatcaattctcaaagcatcacaggaagcagcatcagataaccacgagaaagaaagatcaagtgcaacatcaaaagctgattatgaaagatcatttgatcaagacgtcacttatgaaagatcttcaccgttgcttgaaccaagtgaagaaccagtgatggaatccaaagaaccagaactgacacaagaagagattgatcacattgcaaggatccagagtcttgcagaacaatcatcattcgaacaagcttcaacgattcctgatcgaccacctcttccagcccggcttccgactgtagacgagccgattgtcatctcagaacaacacgaagaagacagatcaagtgcaacatcgggagctgactatgaaagatccttcgatcaagaagtcacgtatgaaagatcttcaccgttgcttgaaccatgtgaagaaccagtgatggaatccaaagaaccagaactgacacaagaagagattgatcatattgca...
position 1741
using gene prediction method: Gnomon." /db_xref="GeneID:132711909" ncRNA 1..112 /ncRNA_class="lncRNA" /gene="LOC132711909" /product="uncharacterized LOC132711909" /db_xref="GeneID:132711909" ORIGIN // caactctaatggctctccagtacacatctggaactgctggatggcctcgtggtgagacctcttatacccagggggaggagtcagaggcaagaagagattgcaccaatgaggg
position 88
XR_009622629.1 -
Pantherophis guttatus -
NCBI
AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA gaaggcgaccacgtcgtcgccaagaagagattgaagacgacgaatggagcgaaagtagtaaggaggggttgagggggggggaggtcgggatcgagatggcataatgtaggaaccggatggaagagtctaaaag
position 21
misc_feature 420..899 /gene="LOC107891247" /note="Integral membrane protein EMC3/TMCO1-like; Region: EMC3_TMCO1; pfam01956" /db_xref="CDD:396507" ORIGIN // gggattataggaggtgtgtttttctgggaacatatctttggagttgaatgctaacaagaagagattgaagttagtctatttaagttgaatgctaacaagaagagattgaagttagtctatttaagtgaatgcttcaagttgaactccgcaaattgtgaaagaaagaggtttcttgagttcatccttttcatttgtaggttgtatcgtttaataatagagataagagatgggttgaaatgagtaagcccatagtggtgagaaataaaaggcaaagcccactccttgggttgtcgtctacttgggattcgaatcaatttgactaggaacggatcacagagactgagagtgaagacacccacccaatcaaccttgtgaaaatggcgacaccccaattcctatcatccttccagtactccgacagtctaacagtcgtagctatctcct...
position 55
XM_016815976.2 -
Gossypium hirsutum (cotton) -
NCBI
samples with support for all annotated introns" /db_xref="GeneID:120275457" ncRNA 1..148 /ncRNA_class="lncRNA" /gene="LOC120275457" /product="uncharacterized LOC120275457" /db_xref="GeneID:120275457" ORIGIN // tgaaacccaaatcatgttttatgtttatggttgtagtaatgttcttcgtcatgtataagttgacaaaattccaacaggcacaagaagagattgaatcagtatctcagacttttgattccatgatgaggaggacaccaaagaagctgta
position 81
XR_005541109.1 -
Dioscorea cayenensis subsp. rotundata (Guinea yam) -
NCBI
AUTHORS Li,C. and Chen,X. TITLE Direct Submission JOURNAL Submitted (18-MAY-2020) Department of Plant Pathology, China Agricultural University, Yuanmingyuan Xilu 2, Beijing 100193, China atgggaaaagtccacggctcgctcgcccgcgcaggcaaagtcaaatctcaaactcccaaagtggagaaacaggagaagaagaagactcctaaaggtcgtgccaagaagagattgttgtacactcgtcgtttcgtgaatgttacgacgcttccaggcggaaagaggcgcatgaaccccaaccccgagaagtaa
position 102
XM_043329423.1 -
Rhizoctonia solani -
NCBI
including 1 sample with support for all annotated introns" /db_xref="GeneID:113437314" ncRNA 1..153 /ncRNA_class="lncRNA" /gene="LOC113437314" /product="uncharacterized LOC113437314" /db_xref="GeneID:113437314" ORIGIN // acaatcatccaatggaacagcttgccatcagaagctgtgagtacttcatcacttgagactttcaagaagagattggactgtcatttttcagaaatggtgtaggtctcctgcttgggcaggggtttggactagattacctacaaggtcttttcc
position 63
XR_003374214.1 -
Pseudonaja textilis -
NCBI
ncRNA 1..219 /ncRNA_class="lncRNA" /gene="LOC110938512" /product="uncharacterized LOC110938512" /db_xref="GeneID:110938512" ORIGIN // ctcaagtacggcgtgcaacaagtgcctacccacgtcgtcaaagaactcatcatgcacgaggtggtgcttgggggtggccaggatgcatctgctgttaccacaaccatcatcgtgcggggaagtttgaagccaaattttatgacaaggttctgcaagaagagattggaggcgttaaaggacatttcgggccaattaatgctttggcattcaacccggatg
position 153
XR_002591448.2 -
Helianthus annuus (common sunflower) -
NCBI
G., Schaap,P., Noegel,A.A., Felder,M. and Platzer,M. TITLE Direct Submission JOURNAL Submitted (11-DEC-2009) Genome Analysis, Fritz Lipmann Institute, Beutenbergstr. 11, Jena 07745, Germany atgggtaaggttcacggtggtttgaacagagctggtaaagtcagaaacgctactccaaacgttgagaagaaggaggtcagaaagccaaaggttggtcgtgccaagaagagattgttgtacaaccgtcgtttcgtcaacgttgtcgttggtttcggaaagaagaagggttacaacactcaaaacgtcccaaatgtctaa
position 102
XM_020573799.1 -
Heterostelium album PN500 -
NCBI
AUTHORS Palmieri,N. TITLE Direct Submission JOURNAL Submitted (20-JUL-2017) Department of Pathobiology, Institute of Parasitology - Vetmeduni Vienna, Veterinaerplatz 1, Vienna 1210, Austria gaaaaaagtgaagaaaaaaggatgatcgaaagagagaacagggaaaggagcagaggtaatgaagaaaaaagagggaagaaatgaagggagaattgaagcagcaagaagagattgtgtgtgtgtgtctagtagtaggatgcatgcatgatcgatcgtgtcgtcttgttattccgaactcctttcaaaaagaaaccctcttttcgaaagcaggaaga
position 102
XM_068071148.1 -
Cystoisospora suis -
NCBI
GeneID:133603655" /translation="MGMCLPCFGGAVDDAVDTPDPETRRRQLAEAAEKRQKETAHRGVKNPEAVERKRKKQEEIEKQTMSTSVSSGGGLRWQVG" ORIGIN // atggggatgtgcctaccgtgctttggtggggcagtcgacgacgctgttgacactccagatccagagacgaggaggcgacagttagccgaggctgcagaaaaaagacaaaaagagacagcacacaggggtgttaaaaacccagaagcggttgaaaggaaaagaaaaaagcaagaagagattgaaaaacagacgatgagtacatctgtgtctagtggtggcgggttgaggtggcaggtgggctga
position 169
XM_061956917.1 -
Nerophis lumbriciformis (worm pipefish) -
NCBI
gtccgggccatagagatcaaatgtgtctgtacgctgctcaatatcctcttcattggtctatttcatatcatttcaggtgtccctcctaaagagtccagctttctgatcaatgctctccttcttcaacactacaagcgtggtgcctactactcacaggggggcgccagtgagtttgccttccacatcatcaatgtcattgagaaggcgggcggtgctgttctcgtcagggctccggtacaccgcgtcctgctcaaccggcagaacaaggcctatggtgtgacggtgctcaaaggacaagaagagattgaggtccatgcccctgttgtcatttctaatgctggcattttcaacatattcgagaagtttctacctcagcccatacaggagaaaccaggtgtccctcctaaagagtccagctttctgatcaatgctctccttcttcaacactacaagcgtggtgcgtactactcacggggggcgccagtgtgtttgccttccacatcatcaatgtcattgagaaggcgggcggtgctgttctcgtcagggctccggtacaccgcgtcctgctcaaccggcagaacaaggcctatggtgggaaaa...
position 370
XM_034148409.1 -
Trematomus bernacchii (emerald rockcod) -
NCBI
product="uncharacterized LOC103163642" /db_xref="GeneID:103163642" ORIGIN // tatagactgctgcatgctggctggctaggttgctctttttaacttagaaagttgaggaaacaacaaagtagaggatgaatggtatctggaggttgacatactgatactcggggaaggtacagatgtgaatttcagcatgaagaaaggaagatattttctgttgttcaaggatgagacataccatatgagagggagccactataggtccaagaagagattgggaccatggagatttccagagacctacaaggatgacatgatctcataatcaaggcaa
position 208
XR_003480888.2 -
Cricetulus griseus (Chinese hamster) -
NCBI
Teixeira,M., Chander,A.M., Stajich,J.E. and Venkateswaran,K. TITLE Direct Submission JOURNAL Submitted (30-JAN-2023) Faculty of Medicine, University of Brasilia, Campus Universitario Darcy Ribeiro, Faculdade de Medicina, Asa Norte, Brasilia, DF 70910900, Brazil atggcgacaggggaagacgccctcgcaggacaagaagagattggaataacgcatcggttccctccagaccccgctaacagtcggagaatctgctttaaaggtttatacctttcaatctacaaccagaagacgaaagaccgaaagaccttcgaagaaaatgtatctgaatacaaagaatttgaggtaccagccggatacacttgctatgtcagagttgctacggtgtattttgtacaaaattaa
position 31
XM_064871506.1 -
Knufia obscura -
NCBI
Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, 300 Fenglin Road, Shanghai, Shanghai 200032, China atgattgctctcaagtcgtggaaaaagtctgaacgggtccgctgggacggaaataagcatagtcctgaggagacggctggcttgtttggtctcggtgccctttcatggcttaacccgctctcgttggcaggatacaagaagagattggccctagaggacttgtaccgcctcgattgcaacttggcatcagagcatctgcaggtcaatcacccgcctgtgtcaacagtctgcgcagtagccctgggaaacgttacggtctggccagagcgctga
position 135
XM_011412523.1 -
Metarhizium robertsii ARSEF 23 -
NCBI
for Genomic Regulation, Carrer Dr. Aiguader, 88, 5, Barcelona 08003, Spain atggctaagtctggtattgctgttggtctcaacaagggtcacaagactaccgctaaggaagtcgcccccaagatctcgtacagaaagggtgccctcaccaagagaaccgagttcgtcagatcgatcgtgtcggaagtcgccgggttggctccttacgaaagaagattgatcgaattgatcagaaacgccggtgaaaagagagccaagaagttggccaagaagagattgggtacccacaagagagccttgaagaaggttgaagagatgaacggtgtcatcgctgcttccagaaagcactaa
position 216
XM_034156758.1 -
Diutina rugosa -
NCBI
for Disease Control and Prevention, 1600 Clifton Road, Atlanta, GA 30329, USA atggctagatctggtattgctgtcggtttgaacaagggccacaaggtcaacggtaaggaggttgctccaagaatctcccagagaaagggtgctctttcccagagaaccaagttcgtcagaagcattgtctctgaggtctccggtttggctccatacgagagaagattgattgaattgatcagaaacgccggtgagaagagagccaagaagttggccaagaagagattgggtactcacaagagagctctgagaaaggtcgaggagatgagtcagatcatcactgagtccagaagacactaa
position 216
XM_025482761.1 -
Candidozyma duobushaemuli (Candida duobushaemulonis) -
NCBI
and Aging, Nice (IRCAN), 28 Avenue de Valombrose, Nice, PACA 06107, France atggctgtcaagactggtatcgctattggtttgaacaagggtaagaaagtcacccaaatgactccagctccaaagatctcctacaagaagggtgctgcctctaacagaaccaagttcgtcagatctttggttagagaaatcgccggtttgtccccatacgaaagaagattgatcgatttgatcagaaactccggtgaaaagagagccagaaaggtcgccaagaagagattgggttctttcaccagagccaaggctaaggtcgaagaaatgaacaacatcattgctgcctctcgtcgtcattaa
position 219
XM_033913633.1 -
Saccharomyces paradoxus -
NCBI
gttgaagagctggacgcagcgaataaacatgcagtaaaaccccaaagagagagtgtatctgaagtcaaccaaagtgtttccaaagaaagtgtacctgaagttccttctgtgagattggacactgctgaaattggtgtagatgaagttcatgaggtcagtgtttcacatccagaagaaagtataaaagaattagacagcacggatgacagccagacgactgaagctgtgtttttagaagctttacctgaagatgaagagattgttgcagacgaaggttctgtagtcggactccatcaagaagagattgttgcagacaaaggttctgtggtccaaatctgtcaagaagagattgttgcagaggaaggttctgtggtccaaatccctcaagaagaagagattgttgcagacgaaggttctgtggtcggactccatcaagaagagattgttgcagacaaaggttctgtggtccaaatctgtcaagaagagattgttgcagaggaaggttctgtggtccagctccctcaagaagaagagattgttgcagaggaaggttctgtggtccagctccctcaagaagaagagattgttgcagaggaaggt...
position 2827
XM_029494347.1 -
Echeneis naucrates (live sharksucker) -
NCBI
Cambridge, MA 02142, USA atgccagacaatccacagtttcttggaccactactcccgcaacacattgccgaaaccatcaacgtcagcattggacccagtggcgagaacagggagtatctcttgcatctccaagatgccctagaagctctgagtgctcacagccatgacgaacatattgccgatctagcacgaagagtgcgtgctttggatccacctacgcggccggcatgtccttcttcaatcggccacgacttgaggaagattaacagcaccgaagaacaagaagagattgagaaggatacatga
position 262
XM_013407183.1 -
Exophiala aquamarina CBS 119918 -
NCBI
translation="MPKKKVSSAEGAVKEEPKKRLARLSAKPAPAKVETKPKKAAGKDTSSDKKCKPKGKGGAKAKQAEMANQATKEDLPAENGETKN" misc_feature 4..252 /gene="LOC102973125" /note="HMG14 and HMG17; Region: HMG14_17; pfam01101" /db_xref="CDD:460064" ORIGIN // atgcccaagaagaaggtcagctccgctgagggggcagtgaaggaggagcccaagaagagattggcaaggttgtcagctaaaccggctcctgcaaaagtggaaacgaagccaaaaaaggcagcaggaaaggatacatcttcagacaaaaagtgcaaaccaaagggaaaagggggagcaaaggcaaaacaggctgaaatggctaaccaagcgactaaagaagacttacctgcagaaaatggagaaactaaaaactag
position 51
XM_055080245.1 -
Physeter catodon (sperm whale) -
NCBI
Acytostelium Genome Consortium TITLE Direct Submission JOURNAL Submitted (05-SEP-2014) Contact:Hideko Urushihara University of Tsukuba, Faculty of Life and Environmental Sciences; Tennodai 1-1-1, Tsukuba, Ibaraki 305-8572, Japan ggtcagaaacgctactccaaacgtggagaagaaggagacccgcaagtccaaggttggtcgtgccaagaagagattgttgtacaaccgtcgtttcgtcaacgttgtcaccggtttcggaaagaagaagggatacaacacccagaacgttccaaatgtctaagcaacatagtagcgtcgcgtccgtccctcagtagtcccgtgcctctccgctcattgcaacactggacactcgatcacggaggccagtcggtcctcaacagcccgtctgtcctccacgtaaataaacaaccggctttc
position 64
XM_012897535.1 -
Acytostelium subglobosum LB1 -
NCBI
Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark atgatgaatgaaccgacgaatatcagtcgtccagtactctttcgagctcgggaaggtcttccaggcaaaggcaccaagaatcgtgcaggaaaaggcgatgaggtgtggctcattgctggaatgccgaccccagttgtgttgcgaaagacagagcgtgaggattgtttcacaagaactgatattgtctatgttcacgggatcatgcatggagaattgtttgaccagaaagatcgtatacaagaagagattgagctcatctag
position 238
XM_056675516.1 -
Penicillium coprophilum -
NCBI
A.A., Willis,J.H. and Phillips,P.C. TITLE Direct Submission JOURNAL Submitted (19-DEC-2019) Institute of Ecology and Evolution, University of Oregon, 5289 University of Oregon, Eugene, OR 97403, USA atgtccggcaataaaagtgaaacgacagaaagtggaaaaactacgttgccgcatgaacgactgattgaagcatacaaccgaaggtttgaaattcaagaagagattgatgttatgaccaaaactacggatggctaccaatccaggaaatttgaccaattgacaatgcagctcacctatgttgacaatatcatctcaattggggagagcgactttgataagaaacgtgccgccaccgtgggaaagttgttcgctgtattgaggactctccaacattctaacaactaa
position 94
XM_053736243.1 -
Caenorhabditis remanei -
NCBI
Peking Union Medical College Hospital, 1 Shuaifuyuan, Beijing 100730, China atggctagaactggtatcgctgtcggattgaacaagggtcacaaaaccaccgccaaggaggtcgccccaagacgtgtcaacctcaagggccgtgtctccaagagaggtgctttcgttaagagcatcgtctctgaggtctccggtttggctccatacgagagaagattgatcgagttgatcagaaacgccggtgagaagagagccaagaagttggccaagaagagattgggtacccacaagagagctttgaagaaggttgaggagatcaacaccatcattgctgagtccagaagacactaa
position 216
XM_063021626.1 -
Australozyma saopauloensis -
NCBI
Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA atggctaagtcaggtattgctgctggtttaaacaagggtcacaagactaccgctaaggaagtcgctccaaaggtttcctacagaaagggtgctttaagtaagagagctgactttgtcagaaacatcgtcaaggaagttgctggtttagccccatacgaaagaagattgattgaattgatcagaaacgccggtgaaaagagagctaagaagttggccaagaagagattgggtacccacaagagagctttaagaaaggttgaagaaatgaacaaggtcattgctgaatctagaagacactaa
position 216
XM_007374654.1 -
Spathaspora passalidarum NRRL Y-27907 -
NCBI
atgatacaacaacgctttgaggttgaagacagtatcgccgctggtgttaacaagggtcacaaagtgaccgctaaggaggttgccccaaaaatctcgtacagaaagggtgctttgtccaagagaaccgccttcgtcagagacattgtccgtgaagtgtccggtttggctccatacgagagacgtgtcattgagttgatcagaaatgctggtgagaagcgtgccaagaagctggccaagaagagattgggaactcacttgagagccaaggccaaggttgaggagatgaacaagatcatccaagagtctagacgtcactaa
position 234
XM_022601045.1 -
Kuraishia capsulata CBS 1993 -
NCBI
db_xref="GeneID:122559481" ORIGIN // tgatagaaacacagaattcaaagcactggagacaccatcctcactgtttaaagttttcaactggtgtttgtggattatatattatcggtactgaacatgtgtacaaacagctttatcatcatgatgcctgaccacaaaagactgagacatgatggaagaagtgacatcaaacaaaaagagccaaaggcccttaccatgcccttgcatcctccaagcaggcttctgccattagccaagaaagagattgttttggaacaagaagagattgattaacagttgtataccagccatgtcatgatttggaggtg
position 256
XR_006314432.1 -
Chiloscyllium plagiosum (whitespotted bambooshark) -
NCBI
NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 270) AUTHORS Petersen,C. TITLE Direct Submission JOURNAL Submitted (01-DEC-2022) Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark atgggtccaatggcacacaaccagaagctgcaagaagagattgttgtgactagtttgactttgtcctaccaaatggcggtacggaccggtactatcctcaatttggctggggccctcattgctcgtcccggacatgagcctaaggctggcagctcggccgccaggactgttcctttctcttcctctcgggaatccactgcgattgggcaaccacaggctgaggcttctgaacagcctgctaatggaactcaacctcaatcggctatctaa
position 31
XM_056709385.1 -
Penicillium chrysogenum -
NCBI
by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:117283624" ncRNA 1..322 /ncRNA_class="lncRNA" /gene="LOC117283624" /product="uncharacterized LOC117283624" /db_xref="GeneID:117283624" ORIGIN // ctgataatggatctgagaagacttctagactccagtgtcaggctgtcttcaagaagagattgagagacccctgatttcgggaacgtacatacaacatgaagttgggccaccctttaactgactatggatcttacaactatatctgcaaagtggaggagcttgaacagtcttctgtaagcttttctggatgtgctgttgatcgatcccacccacctggctcattcagcatgagagaggtgatgaaatggatggaagaaaaccaccagcctgcccatgtgaaaatatgagaactgggaattcattttggaatattgttggagtc
position 50
XR_004514658.1 -
Fukomys damarensis (Damara mole-rat) -
NCBI
of Genetics, University of Wisconsin-Madison, 425-G Henry Mall, 2434 Genetics/Biotechnology Center, Madison, WI 53706-1580, USA atgactccagctccaaagatctcctacaagaagggtgctgcctccaacagaaccaagttcgtcagatctttggtcagagaaatcgctggtttgtctccatacgaaagaagattgatcgatttgatcagaaactccggtgaaaagagagccagaaaggtcgccaagaagagattgggttctttcatcagagccaaggctaaggtcgaggaaatgaacaacatcatcgctgcttctcgtcgtcattaa
position 162
XM_018368212.1 -
Saccharomyces eubayanus -
NCBI
Supercomputing Center, Carrer Jordi Girona 29, Barcelona 08034, Spain atggctaagtcaggaattgcagtaggtttaaacaaaggccacaaggttgccaccaaggaagttgccccaaagatttcgtacagaaagggtgccttgtcacaaagaaccacttttgttagatcaatcgttaaagaagttgccggattggctccatacgaaagaagattgattgaattgattagaaatgccggtgagaagagggctaagaagttggccaagaagagattgggtactcacaagagagccggaaagaaggttgaagaaatgaacaagatcattgctgaatcaagaagacactaa
position 216
XM_051753611.1 -
Candida theae -
NCBI
/ Gent University, Technologiepark 927, Ghent, 9052, BELGIUM atgagaaatattgtactaacaaattcaggtattgcagtaggtgctaacaagggacacaaggtcaccccaaaggccgttgctccacaaaagagagtcgctatcagccaaagaactgactttgttagaaagttggtccgtgaggtcactggtctgtctccatacgaaagaagaatcattgagttgatcagaaactctggtgagaagagagccagaaagttcgccaagaagagattgggtactcacaccagagctaaggctaagttggaagagatgcaaaacgttatccaggaagcaaagcgtcattaa
position 222
XM_002490801.1 -
Komagataella phaffii GS115 -
NCBI
Computational Biology Group, Mlynska dolina, Bratislava 842 48, Slovakia atggctaagtctggaattgctgtcggtttaaacaagggtcacaagactaccgctaaggaagttgcacccaaaatctcatacagaaaaggagctttgtctcaaagaaccgttttcgttagatcaatcgtctcggaagtctctggattggccccatacgaaagaagattgattgaattgatcagaaacgctggtgaaaagagagccaagaagttggccaagaagagattgggtacccacaagagagctttgagaaaagttgaagagatgaacaagattattgctgaatctagaagacactaa
position 216
XM_066974844.1 -
Lodderomyces beijingensis -
NCBI
of Illinois Urbana-Champaign, 2001 S. Lincoln Avenue, Urbana, IL 61802, USA atggttaagtcaggtattgccagtggattaaacaagggtcacaaagtcaccccaaaggatgtcaagccaaagatctcttacagaaagggtgctttgtccaagagaaccgtctttgtcagagacatcgtcaaggaagttgccggtttggccccatatgaaaagagattgatcgaattgatcagaaacgctggtgaaaagagagctaagaagttggccaagaagagattgggtactcacaagagatctttaaagaagattgaagacatgaacaaggtcatcgctgaagccagaagacactaa
position 216
XM_006688023.2 -
Yamadazyma tenuis -
NCBI
Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993-0002, USA atggctagatctggtattgctgtcggcttgaacaagggtcacaaaaccacccaaaaggacgttgctccaaagatctcttacagaaagggcgctttgtccaagagaactgccttcgtcagaagcattgtctctgaggttgctggcttggctccatacgagagaagattgatcgaattgatcagaaacgccggtgaaaagagagccaagaagttggccaagaagagattgggtactcacaagagagccttgaagaaggttgaagagatgaccaacatcatcgctcaatccagaagacactaa
position 216
XM_066102330.1 -
Clavispora lusitaniae -
NCBI
LOC113332400" /product="uncharacterized LOC113332400" /db_xref="GeneID:113332400" ORIGIN // gaagaagctggcagcactgaaaccagagaatagcactgtcaatgagtgggaagagttcgtgaaacatgtttgctcggaggaattcagaacaaaaagattctggatgcaacaaatcaggaagaaatacaccactccacacactatcagtagactgggttgggtgagactcgaggctaagatgcaaaaggaacggaaaacacaagaagagattgatagagtcgaagtttggacaacgggtcacaaacataaggaaggaaaggaacctaa
position 200
XR_003351493.1 -
Papaver somniferum (opium poppy) -
NCBI
Broad Institute of MIT and Harvard, 415 Main Street, Cambridge, MA 02142, USA atggctagatctggtattgctgtcggtttgaacaagggccacaaggtcaacgctaaggaggttgctccaaagatctcccagagaaagggcgccctttcccagagaaccaagttcgtcagaagcattgtgtctgaggtttccggcttggctccatacgagagaagattgatcgagttgatcagaaacgccggtgagaagagagccaagaagttggccaagaagagattgggtactcacaagagagctctcagaaaggttgaggagatgaaccagatcattgctgagtccagaagacactaa
position 216
XM_029032793.1 -
Candidozyma auris (Candida auris) -
NCBI
Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA atggctgtcaagactggtatcgctattggtttgaacaagggtaagaaagtcacccaaatgactccagccccaaagatctcctacaagaagggtgctgcctccaacagaaccaagttcgtcagatctttggttagagaaatcgccggtttgtccccatatgaaagaagattgatcgatttgatcagaaactccggtgaaaagagagccagaaaggtcgccaagaagagattgggttctttcaccagagccaaggctaaggtcgaagaaatgaacaacatcattgctgcctctcgtcgtcattaa
position 219
NM_001184312.1 -
Saccharomyces cerevisiae S288C -
NCBI
Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA atgaccgttaagacaggaattgctattggtttaaacaaaggtaagaaggtcactagcatgaccccagctccaaaaatctcttacaagaaaggtgctgcttccaacagaaccaagttcgtaagatctttggtcagagaaatcgctggtttgtctccatacgaaagaagattgattgatctaataagaaactctggtgaaaagagagctagaaaggtcgccaagaagagattgggttctttcaccagagccaaggctaaggtcgaagaaatgaacaacatcattgctgcttctcgtcgtcactaa
position 219
Synonym: RPL39B
NM_001182701.1 -
Saccharomyces cerevisiae S288C -
NCBI
Hopkins Medical Institution, 725 N Wolfe St, Baltimore, MD 21205, USA atggccgttaagactggtattgctgttggtttgaacaagggtactaaggtcacccaaatgaccccagccccaaagatctcttacaagaagggtgctgcttctaacagaaccaagttcgttcgttctttggtcagagaaatcgctggtttgtctccatacgaaagaagattgatcgatttgatcagaaacgccggtgaaaagagagctagaaaggtcgccaagaagagattgggttctttcaccagagctaaggctaaggttgaagaaatgaactccatcattgctgcttctcgtcgtcactaa
position 219
XM_002999537.1 -
Nakaseomyces glabratus (Candida glabrata) -
NCBI
University; Yoshida Konoe-cho, Sakyo-ku, Kyoto, Kyoto 606-8501, Japan:Osaka atggctaaatctggtattgctgttggtttgaacaaaggtcacgtcgtcacctccaaggctgttgccccaaagatttcctacagaaagggtgctctctccaagagaacttcttttgtcagagatattgtcagagaagtcggtggtttggctccatacgaaagaagattgattgaattgttgagaaactctggtgaaaagagagctaagaagttggccaagaagagattgggtactttgaagagagctaaggccaagttggaagaaatcaacaagatcatggctgaacaaagaagacaccactaa
position 216
XM_064994330.1 -
Saccharomycopsis crataegensis -
NCBI
lncRNA" /gene="LOC124281168" /product="uncharacterized LOC124281168" /db_xref="GeneID:124281168" ORIGIN // gtgcacatcaaggttttgaccaattctgcagaagacttgaaacgcttggcgtattaggagcgctaaaacatcatggaacacgcatgaaagaagtttttgtatatgaaaaaaggcttctggattctacaacaatagaactattgttcgagccagatttagcagaggccaactccaaccgacgccgccaagaagagattgttctctcaaactggagagattttcttcttgatttggaagaaggtacggaagtccccacactcaaagacctcttggtgtttgtgaccggggctgacggaatcccgcctctgggattcgacccctctccacacctgctgtttcactc
position 186
XR_006899862.1 -
Haliotis rubra (blacklip abalone) -
NCBI
V. and Gabaldon,T. TITLE Direct Submission JOURNAL Submitted (08-JUL-2021) Life Sciences, Barcelona Supercomputing Center, Carrer Jordi Girona 29, Barcelona 08034, Spain atgttcagaccaattgctcgtatatcatcaagaagattattttcaatcaccccaagaagatcaaacttgattggtgacttgtacgtccaaaacattagacagttcaagccacaagccctttcacaagaagagattgatgccgctgtaaaaaagtttcaattgccaggtaagccaaccattccccaaatccacgagttgtcaactgaacaagttaaagagtatgaacagagtgaagttgaagctgaagctgcacaaccaactgaaaatgactctgaaactaagccagatgaagattggtttgtttttgatgaagttgaggctgagggccattaa
position 124
XM_051751876.1 -
Candida theae -
NCBI
including 8 samples with support for all annotated introns" /db_xref="GeneID:109948414" ncRNA 1..315 /ncRNA_class="lncRNA" /gene="LOC109948414" /product="uncharacterized LOC109948414" /db_xref="GeneID:109948414" ORIGIN // gcaaagtcgacagtaatgtgcaacaatcaagagttggccgagatgcattttttaatttcatgtacaagaagagattgctaataaatggaggaaattaaaccttaaagagaaggctacatatggttctgccttggaaggttcgagtgggccaaggattaaaatatcaaccatgtaaataatatagggcctccaatttacggatatttcgggggatatattattatcgtcttaggtatcggaaaaaagaagaagacagatataggtattgaaacacataattttggtataaaactttcattaatgttatgtacatta
position 65
XR_002271033.1 -
Prunus persica (peach) -
NCBI
TITLE Direct Submission JOURNAL Submitted (06-APR-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA atgcttcgtttctcgtttcccggcgagtccgcattgcaatccatcaagatggaggaagcctctggttgcaacgagcgtgattttgaatacacatctgccgacaaacgagatgtttgcacagagtcggtgatgcctgcaagaagagattgtgtgggcgatggcttctatcaaaccaaattctctgcacaaaagagcgaggcgctgaagtgcgtccgtgtgatgagaatggatcatggaacagagaacaacttccccgggacccggcccatgtggagatctcggctcattcttccgttggctgatcttgttatgtatgtacatcgctatttggggtttacaggccatttcagctga
position 137
XM_009852508.1 -
Neurospora tetrasperma FGSC 2508 -
NCBI
Key Laboratory of Health and Disease Genomics, Chinese National Human Genome Center at Shanghai, No. 250 Bibo Road, Shanghai 201203, China atgtcaatttatgtggagcaaatgaggtcaaaatacacgtatttacgaatacgtatgcaacgttctaattcggtttgtcgcagtacgacttcaaaaaccaagtggtatttgtccttttgtcactggatggcagttgtttatggcagagtgtcaagaagagattggttggattctaagcaccaaataaatcaagaacttgaggatgcattagcatcactagccaaaccacaatctccctcaggacaaatgagggcaataagcttgaagaatttaccttctctgtga
position 152
XM_024492116.1 -
Echinococcus granulosus -
NCBI
Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 333) AUTHORS Guida,A. TITLE Direct Submission JOURNAL Submitted (19-OCT-2011) to the INSDC atgttcagaccaattgcccgtatatcatcaagaagattgttttcaatcactcctagaagatcaaacttgattggagacttgtatgtccaaaacattagacaattcaaaccacaagccctttcacaagaagagattgattccgcagttaagaagtttcaattaccaggtaaaccaaccattccacaaattcacgaattgtcaactgaacaagttaaagagtatgagcaaaatgaagttgaagctgaggctgcacaaccaactgaagctaattctgaaactaaaccagatgaagattggtttgtttttgatgaagttgaagctgaaggacattag
position 124
XM_036812515.1 -
Candida parapsilosis -
NCBI
gtggtgaagttatctcaggccgaggattacacggcctttgaagacctgattcagatggcaggttgtatatccatggtccatacgctgagcaggcgacaagaaatgtgcaaggcacatcaaggttttgaccaattctgcagaggacttgaaacgcttggcgtattaggagcgctaaaacatcatggaacacgcatgaaagaagtttttgaatatgaaaaaaggcttctggattctacaacaatagaactattgttcgaagcagatttagcaaaggccaactccaaccgacgccgccaagaagagattgttctctcaaactagagaga
position 329
XM_046725384.1 -
Haliotis rubra (blacklip abalone) -
NCBI
Data Export:
Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.
Debug Info:
Redirect URI : http://ggrna.dbcls.jp/seq%3acaagaagagattg
lang : en |
div : |
spe : |
query_string : seq:caagaagagattg |
format : html |
download :
0.000 | 0.000 | search_start;
0.082 | 0.082 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caagaagagattg)?to=0&format=json
0.133 | 0.051 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caagaagagattg)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.138 | 0.005 | cgi_end;
GGRNA ver.2 by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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