GGRNA | Results

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Oryza sativa Japonica Group serotonin N-acetyltransferase 2, chloroplastic-like (LOC4344423), mRNA; nuclear gene for chloroplast product. (886 bp)

SNAT2" /note="Predicted N-acetyltransferase YhbS [General function prediction only]; Region: yhbS; COG3153" /db_xref="CDD:442387" ORIGIN // REFERENCE 1 (bases 1 to 886) AUTHORS Hwang,O.J. and Back,K. TITLE Simultaneous Suppression of Two Distinct Serotonin N-Acetyltransferase Isogenes by RNA Interference Leads to Severe Decreases in Melatonin and Accelerated Seed Deterioration in Rice JOURNAL Biomolecules 10 (1), 141 (2020) PUBMED 31952365 REMARK GeneRIF: Simultaneous Suppression of Two Distinct Serotonin N-Acetyltransferase Isogenes by RNA Interference Leads to Severe Decreases in Melatonin...

Synonym: OsJ_25726; OsSNAT2; P0015C07.5; SNAT2
NM_001422370.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI

Oryza sativa Japonica Group serotonin N-acetyltransferase 1, chloroplastic-like (SNAT1), mRNA; nuclear gene for chloroplast product. (1480 bp)

exon 871..1466 /gene="SNAT1" /gene_synonym="GNAT5; NSI; OsJ_018182; OsJ_18949; OsSNAT1; SNAT" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 1480) AUTHORS Hwang,O.J. and Back,K. TITLE Simultaneous Suppression of Two Distinct Serotonin N-Acetyltransferase Isogenes by RNA Interference Leads to Severe Decreases in Melatonin and Accelerated Seed Deterioration in Rice JOURNAL Biomolecules 10 (1), 141 (2020) PUBMED 31952365 REMARK GeneRIF: Simultaneous Suppression of Two Distinct Serotonin N-Acetyltransferase Isogenes by RNA Interference Leads to Severe Decreases in Melatonin...

Synonym: GNAT5; NSI; OsJ_018182; OsJ_18949; OsSNAT1; SNAT
NM_001402574.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI

Oryza sativa Japonica Group S-adenosylmethionine synthase 3-like (LOC4325163), mRNA. (1645 bp)

AUTHORS Li,W., Han,Y., Tao,F. and Chong,K. TITLE Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice JOURNAL J Plant Physiol 168 (15), 1837-1843 (2011) PUBMED 21757254 REMARK GeneRIF: RNA interference (RNAi) transgenic rice with downregulated transcripts of OsSAMS1, 2 and 3 showed pleiotropic phenotypes, including dwarfism, reduced fertility, delayed germination, as well as late flowering[SAMs1,2,3]...

Synonym: METK3; OsJ_001358
NM_001409408.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI

PREDICTED: Oryza sativa Japonica Group protein argonaute 17-like (LOC4328436), transcript variant X1, mRNA. (2991 bp)

misc_feature 797..1078 /gene="LOC4328436" /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature 1211..2566 /gene="LOC4328436" /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component...

Synonym: AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545
XM_015768524.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI

PREDICTED: Oryza sativa Japonica Group uncharacterized protein (LOC4330879), mRNA. (4472 bp)

gene="LOC4330879" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412048" misc_feature 920..2089 /gene="LOC4330879" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:462472" misc_feature 2963..>3403 /gene="LOC4330879" /note="Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]; Region: COG5191" /db_xref="CDD:227518" polyA_site 4472 /gene="LOC4330879" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

XM_015771633.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI

PREDICTED: Oryza sativa Japonica Group uncharacterized protein (LOC4352551), transcript variant X2, mRNA. (5524 bp)

misc_feature 3525 /gene="LOC4352551" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:462472" polyA_site 5524 /gene="LOC4352551" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

XM_015764423.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI

PREDICTED: Oryza sativa Japonica Group uncharacterized protein (LOC4352551), transcript variant X1, mRNA. (5569 bp)

misc_feature 3570 /gene="LOC4352551" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:462472" polyA_site 5569 /gene="LOC4352551" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

XM_015764422.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI

PREDICTED: Oryza sativa Japonica Group protein argonaute 11-like (LOC4333733), mRNA. (3109 bp)

note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1059..1412 /gene="LOC4333733" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1215..1217,1260..1262,1293..1295,1305..1307, 1359..1361,1380..1382,1386..1388) /gene="LOC4333733" /note="nucleic acid-binding interface...

XM_066308808.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI

PREDICTED: Oryza sativa Japonica Group protein argonaute 13-like (LOC4334374), mRNA. (4134 bp)

misc_feature 609..953 /gene="LOC4334374" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(756..758,801..803,834..836,846..848,900..902, 921..923,927..929) /gene="LOC4334374" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1089..2435 /gene="...

XM_015775890.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI

PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer homolog 3b (LOC4348944), mRNA. (5412 bp)

Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 2799..3230 /gene="LOC4348944" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cl00301" /db_xref="CDD:469713" misc_feature order(2937..2939,3024..3026,3036..3038,3090..3092, 3192..3194,3198..3200) /gene="LOC4348944" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239210"...

XM_015757500.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI

Oryza sativa Japonica Group rac-like GTP-binding protein 1 (LOC4325879), mRNA. (1173 bp)

Yamaguchi,K., Imai,K., Akamatsu,A., Mihashi,M., Hayashi,N., Shimamoto,K. and Kawasaki,T. TITLE SWAP70 functions as a Rac/Rop guanine nucleotide-exchange factor in rice JOURNAL Plant J 70 (3), 389-397 (2012) PUBMED 22142166 REMARK GeneRIF: Reduction of OsSWAP70A and OsSWAP70B mRNA levels by RNA interference resulted in the suppression of chitin elicitor-induced defense gene expression and ROS production. It is likely that OsSWAP70 regulates immune responses through activation of OsRac1. REFERENCE 3 (bases 1 to 1173) AUTHORS Fujiwara,M., Hamada,S., Hiratsuka,M., Fukao,Y., Kawasaki,T. and...

Synonym: OsRac1; Rac1
NM_001401527.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI

PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer homolog 4-like (LOC4336362), transcript variant X1, mRNA. (4685 bp)

CDD:460900" misc_feature 2026..2406 /gene="LOC4336362" /gene_synonym="DCL4; OsDCL4; SHO1" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cl00301" /db_xref="CDD:469713" misc_feature order(2149..2151,2209..2211,2221..2223,2275..2277, 2365..2367,2371..2373) /gene="LOC4336362" /gene_synonym="DCL4; OsDCL4; SHO1" /note="nucleic acid-binding interface...

Synonym: DCL4; OsDCL4; SHO1
XM_015780808.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI

Oryza sativa Japonica Group probable L-ascorbate peroxidase 8, chloroplastic (LOC4329643), transcript variant 2, mRNA; nuclear gene for chloroplast product. (1817 bp)

Chen,H., Guo,L., Zhu,L. and Zhai,W. TITLE The rice thylakoid membrane-bound ascorbate peroxidase OsAPX8 functions in tolerance to bacterial blight JOURNAL Sci Rep 6, 26104 (2016) PUBMED 27185545 REMARK GeneRIF: The overexpressing lines exhibited increased tolerance to bacterial blight. The RNA interference (RNAi) lines were considerably more sensitive than the control plant. Publication Status: Online-Only REFERENCE 2 (bases 1 to 1817) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,...

Synonym: APX8; OsAPx08; OsAPx8; P0470G10.5
NM_001401875.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI

Oryza sativa Japonica Group probable L-ascorbate peroxidase 8, chloroplastic (LOC4329643), transcript variant 1, mRNA; nuclear gene for chloroplast product. (1820 bp)

Chen,H., Guo,L., Zhu,L. and Zhai,W. TITLE The rice thylakoid membrane-bound ascorbate peroxidase OsAPX8 functions in tolerance to bacterial blight JOURNAL Sci Rep 6, 26104 (2016) PUBMED 27185545 REMARK GeneRIF: The overexpressing lines exhibited increased tolerance to bacterial blight. The RNA interference (RNAi) lines were considerably more sensitive than the control plant. Publication Status: Online-Only REFERENCE 2 (bases 1 to 1820) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,...

Synonym: APX8; OsAPx08; OsAPx8; P0470G10.5
NM_001401874.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI

Oryza sativa Japonica Group protein argonaute 3-like (LOC4336992), mRNA. (3356 bp)

domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 917..1249 /gene="LOC4336992" /gene_synonym="AGO3; OsAGO3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1052..1054,1097..1099,1130..1132,1142..1144, 1199..1201,1220..1222,1226..1228) /gene="LOC4336992" /gene_synonym="AGO3; OsAGO3" /note...

Synonym: AGO3; OsAGO3
NM_001419866.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI

Oryza sativa Japonica Group protein argonaute 17-like (LOC4328436), mRNA. (3003 bp)

pfam08699" /db_xref="CDD:462567" misc_feature 907..1188 /gene="LOC4328436" /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature 1321..2676 /gene="LOC4328436" /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545" /note="PIWI domain, Argonaute-like subfamily....

Synonym: AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545
NM_001409344.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI

Oryza sativa Japonica Group endoribonuclease Dicer homolog 4-like (LOC4336362), mRNA. (5356 bp)

CDD:460900" misc_feature 2682..3062 /gene="LOC4336362" /gene_synonym="DCL4; OsDCL4; SHO1" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cl00301" /db_xref="CDD:469713" misc_feature order(2805..2807,2865..2867,2877..2879,2931..2933, 3021..3023,3027..3029) /gene="LOC4336362" /gene_synonym="DCL4; OsDCL4; SHO1" /note="nucleic acid-binding interface...

Synonym: DCL4; OsDCL4; SHO1
NM_001402397.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI

Data Export:

Debug Info:

0.000 | 0.000 | search_start;
0.080 | 0.080 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:RNA+interference)%7C(nt:RNA+interference)%7C(aa:RNA+interference))?source=Oryza sativa Japonica Group (Japanese rice)?to=0&format=json
0.121 | 0.040 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:RNA+interference)%7C(nt:RNA+interference)%7C(aa:RNA+interference))?source=Oryza sativa Japonica Group (Japanese rice)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.122 | 0.002 | cgi_end;

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]

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