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2024-04-19 17:33:27, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Gallus gallus uncharacterized LOC124417667 (LOC124417667), transcript variant X2, ncRNA. (5536 bp)
aggggagtgctttcttttactagctctatgacccccaaatcaattaagctggttacgtgttcagcagtcagcatggtcagttattagtagtttctccacagtttcaagcttaaataccactcctggtgatcactgtcttctgagagacttcagatctgggtactgacctatcctagagcatctgggagtagccttatatcagtcagtgaaggaagctagggggagttgaatgctgtccagaggctgtctatgaagtagccacaggagaatctgtgtttttgtttttctcctgaacaatctcttcttggatcttagacaaggcttaaacgagatttttgaaaaaaagctgcaagaaaaattttgtgtaatagtatgtatgcaattattctcttccataagcagaaacatgcagagtgacaccatttggttattaccaactaatctgtggtcaaatttctgaagtattttatcattgctctttgcacttctatagcagaacgtattaacacattcagtctccaccttcatggacaaagatttacccaagtccacatcctggtagtgagttttgcaccactgtaaaacaaatcacgtttgtga...
position 1038
XR_006933207.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus uncharacterized LOC124417667 (LOC124417667), transcript variant X1, ncRNA. (5655 bp)
aggggagtgctttcttttactagctctatgacccccaaatcaattaagctggttacgtgttcagcagtcagcatggtcagttattagtagtttctccacagtttcaagcttaaataccactcctggtgatcactgtcttctgagagacttcagatctgggtactgacctatcctagagcatctgggagtagccttatatcagtcagtgaaggaagctagggggagttgaatgctgtccagaggctgtctatgaagtagccacaggagaatctgtgtttttgtttttctcctgaacaatctcttcttggatcttagacaaggcttaaacgagatttttgaaaaaaagctgcaagaaaaattttgtgtaatagtatgtatgcaattattctcttccataagcagaaacatgcagagtgacaccatttggttattaccaactaatctgtggtcaaatttctgaagtattttatcattgctctttgcacttctatagcagaacgtattaacacattcagtctccaccttcatggacaaagatttacccaagtccacatcctggtagtgagttttgcaccactgtaaaacaaatcacgtttgtga...
position 1157
XR_006933206.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus AF4/FMR2 family member 2 (AFF2), transcript variant X1, mRNA. (13420 bp)
cttacaggtacataatgtaagatcaccaaaggtgtttagaggtaaaaggttgaaggaatgcctcattaaagaaaaatgacacactatgcaatgaggttttgatattccattctacctgtttattgttggcttaataattttagtaggcagcacaatttattgcagtttttaggtaatttcaaaatatttgctttcatagtctccactgccattcctatactaaatctgtgaattttctttcagttttgctgttaatctcaaacaaatactcatacaagatttttcttcacagaacaatctcttcttgcatagtgagactcagtgaaagcagatcttaatgggaatgctgcattgatattgtatgtaaaactccattaataagtgtatgcagattcttcatgaaactctctggaagtttaactaaccaactgctgttgaaacaatgtaattccacgtggcatcaatttgcacctgttctgttcatttcagagcattaggaacaaatggtattacttaccttgccatcatgaaaacagcgataaattaaataaaatcaacagatttatccaaaaacaatataacatttgtttaataatggcc...
position 4900
XM_046941145.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus AF4/FMR2 family member 2 (AFF2), transcript variant X2, mRNA. (13604 bp)
cttacaggtacataatgtaagatcaccaaaggtgtttagaggtaaaaggttgaaggaatgcctcattaaagaaaaatgacacactatgcaatgaggttttgatattccattctacctgtttattgttggcttaataattttagtaggcagcacaatttattgcagtttttaggtaatttcaaaatatttgctttcatagtctccactgccattcctatactaaatctgtgaattttctttcagttttgctgttaatctcaaacaaatactcatccaagatttttcttcacagaacaatctcttcttgcatagtgagactcagtgaaagcagatcttaatgggaatgctgcattgatattgtatgtaaaactccattaataagtgtatgcagattcttcatgaaactctctggaagtttaactaaccaactgctgttgaaacaatgtaattccacgtggcatcaatttgcacctgttctgttcatttcagagcattaggaacaaatggtattacttaccttgccatcatgaaaacagcgataaattaaataaaatcaacagatttatccaaaaacaatataacatttgtttaataatggcc...
position 5102
XM_040670643.1 - Gallus gallus (chicken) - NCBI - UCSC

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/gg/comp%3acaagaagagattg
lang : en | div : | spe : gg | query_string : comp:caagaagagattg | format : html | download : 

0.000 | 0.000 | search_start;
0.077 | 0.076 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caatctcttcttg)?source=Gallus gallus (chicken)?to=0&format=json
0.091 | 0.015 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caatctcttcttg)?source=Gallus gallus (chicken)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.092 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]