ver.2
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Previous release (v1)
2024-12-04 17:21:37, GGRNA : RefSeq release 226 (Sep, 2024)
Summary:
Results:
Matches are highlighted with green background.
Overlapping matches are dark colored.
aggggagtgctttcttttactagctctatgacccccaaatcaattaagctggttacgtgttcagcagtcagcatggtcagttattagtagtttctccacagtttcaagcttaaataccactcctggtgatcactgtcttctgagagacttcagatctgggtactgacctatcctagagcatctgggagtagccttatatcagtcagtgaaggaagctagggggagttgaatgctgtccagaggctgtctatgaagtagccacaggagaatctgtgtttttgtttttctcctgaacaatctcttcttggatcttagacaaggcttaaacgagatttttgaaaaaaagctgcaagaaaaattttgtgtaatagtatgtatgcaattattctcttccataagcagaaacatgcagagtgacaccatttggttattaccaactaatctgtggtcaaatttctgaagtattttatcattgctctttgcacttctatagcagaacgtattaacacattcagtctccaccttcatggacaaagatttacccaagtccacatcctggtagtgagttttgcaccactgtaaaacaaatcacgtttgtga...
position 1038
XR_006933207.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
aggggagtgctttcttttactagctctatgacccccaaatcaattaagctggttacgtgttcagcagtcagcatggtcagttattagtagtttctccacagtttcaagcttaaataccactcctggtgatcactgtcttctgagagacttcagatctgggtactgacctatcctagagcatctgggagtagccttatatcagtcagtgaaggaagctagggggagttgaatgctgtccagaggctgtctatgaagtagccacaggagaatctgtgtttttgtttttctcctgaacaatctcttcttggatcttagacaaggcttaaacgagatttttgaaaaaaagctgcaagaaaaattttgtgtaatagtatgtatgcaattattctcttccataagcagaaacatgcagagtgacaccatttggttattaccaactaatctgtggtcaaatttctgaagtattttatcattgctctttgcacttctatagcagaacgtattaacacattcagtctccaccttcatggacaaagatttacccaagtccacatcctggtagtgagttttgcaccactgtaaaacaaatcacgtttgtga...
position 1157
XR_006933206.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
cttacaggtacataatgtaagatcaccaaaggtgtttagaggtaaaaggttgaaggaatgcctcattaaagaaaaatgacacactatgcaatgaggttttgatattccattctacctgtttattgttggcttaataattttagtaggcagcacaatttattgcagtttttaggtaatttcaaaatatttgctttcatagtctccactgccattcctatactaaatctgtgaattttctttcagttttgctgttaatctcaaacaaatactcatacaagatttttcttcacagaacaatctcttcttgcatagtgagactcagtgaaagcagatcttaatgggaatgctgcattgatattgtatgtaaaactccattaataagtgtatgcagattcttcatgaaactctctggaagtttaactaaccaactgctgttgaaacaatgtaattccacgtggcatcaatttgcacctgttctgttcatttcagagcattaggaacaaatggtattacttaccttgccatcatgaaaacagcgataaattaaataaaatcaacagatttatccaaaaacaatataacatttgtttaataatggcc...
position 4900
XM_046941145.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
cttacaggtacataatgtaagatcaccaaaggtgtttagaggtaaaaggttgaaggaatgcctcattaaagaaaaatgacacactatgcaatgaggttttgatattccattctacctgtttattgttggcttaataattttagtaggcagcacaatttattgcagtttttaggtaatttcaaaatatttgctttcatagtctccactgccattcctatactaaatctgtgaattttctttcagttttgctgttaatctcaaacaaatactcatccaagatttttcttcacagaacaatctcttcttgcatagtgagactcagtgaaagcagatcttaatgggaatgctgcattgatattgtatgtaaaactccattaataagtgtatgcagattcttcatgaaactctctggaagtttaactaaccaactgctgttgaaacaatgtaattccacgtggcatcaatttgcacctgttctgttcatttcagagcattaggaacaaatggtattacttaccttgccatcatgaaaacagcgataaattaaataaaatcaacagatttatccaaaaacaatataacatttgtttaataatggcc...
position 5102
XM_040670643.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
Data Export:
Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.
Debug Info:
Redirect URI : http://ggrna.dbcls.jp/gg/comp%3acaagaagagattg
lang : en |
div : |
spe : gg |
query_string : comp:caagaagagattg |
format : html |
download :
0.000 | 0.000 | search_start;
0.073 | 0.073 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caatctcttcttg)?source=Gallus gallus (chicken)?to=0&format=json
0.358 | 0.286 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caatctcttcttg)?source=Gallus gallus (chicken)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.359 | 0.001 | cgi_end;
GGRNA ver.2 by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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