LOCUS       XM_046941145           13420 bp    mRNA    linear   VRT 01-MAR-2022
DEFINITION  PREDICTED: Gallus gallus AF4/FMR2 family member 2 (AFF2),
            transcript variant X1, mRNA.
ACCESSION   XM_046941145
VERSION     XM_046941145.1
DBLINK      BioProject: PRJNA698609
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_052535.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Gallus gallus Annotation Release 106
            Annotation Version          :: 106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13420
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /isolate="bGalGal1"
                     /db_xref="taxon:9031"
                     /chromosome="4"
                     /sex="female"
                     /tissue_type="blood"
                     /country="USA: Fayetteville"
                     /lat_lon="36.0822 N 94.1719 W"
                     /collection_date="20-May-2019"
                     /collected_by="Nick Anthony"
     gene            1..13420
                     /gene="AFF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 7 ESTs, 227 long SRA
                     reads, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments"
                     /db_xref="CGNC:51728"
                     /db_xref="GeneID:422394"
     misc_feature    1
                     /gene="AFF2"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             75..4037
                     /gene="AFF2"
                     /codon_start=1
                     /product="AF4/FMR2 family member 2 isoform X1"
                     /protein_id="XP_046797101.1"
                     /db_xref="GeneID:422394"
                     /db_xref="CGNC:51728"
                     /translation="

MCFPCSLLVHYEQDRNALKRKEWERRNQEVQQDEDLFASGFNLFGEPYKTNKGDALANRVQNTLGNYDEMKDLLTNHSNQSHLVGIPKNSVPQTPIEKNEQNFFSEQRNRVIPSHQISGHSSTSMPPPSSLSSNSALLHSHQSSRKSRTDWSRSGHNCSGTQQSQSSSQQSRTKHSSSHDLPQGRYEDLYNCQSEQHKGGGTEEANSMAASSHSRRHTHSKSAAGEHTYKENSHSKSPTELEFVGHGPGSPLPSTSLLSSNNGLSSQNFPPGLHCKSSMVQQKPTAYVRPMDGQDQVPNDSPELKPPIEIESGYGNQSFGTLLEGKVNTPSSKNKVPKLNIPPVGEAQQRTNNFGYKNRLSSKELGISAMGVVHWISNSVSGSRSAASCGSKVTLPNDSSSVEEILREMSHSWPPPLTAIHTPGKAEQTKFSIPSKVQDSQHLTSGYNVQKWSDPGGKVATKSVTQKSMLEDDLKLSSDEDDNEQAAEKTKLRNIPVKKTGRPIAVPVGGHSGLPVSVAHAAGLAHSSGGSGSSSESESSSESDSDSESSSSDSDCNEESRSATPEPEPPSTNKWQLDKWLNKVNPHNKTIISNQNEPHSETSSQPQNSQQAEGQNKGKLSNSLPPADSKDQAILSPIREKAKPRVAQKTPEAKSSKQKSPAHNEPTAQRTTGKKQPKKVERTSSVEEYNWPKPNNTSNTPKEKDTQEPPEQPKVRTKAAVGKTAPRKEPRTSTGLTSEKKKYRGPSKIVPKSREFIETDSSTSDSNTDQEESLQAKILPACSGPANSIKVKDPGSNILSVSSLTSNGSNTSIDQTSNDLEEQLFSPIPIVQNELLSPLREYEELKSLWVKIDLSLLSRIPGQEPFETISVKTEPREANVKHRRPSRESPTPAAEKTSAKSKRKHKSENLETFVETKKQRLEDPSASCLLPPCISPIPNHRLTSTKESSSNLVKKMAKKREEKLFPPPLSPLLDEPVHRRHSNDNSSFSQETSITNTCQTSSSSSSVSKHRKNENKSNPKGICEEETHNAPTANALLDTNHLETDIWSAMPTLSNGNSEPRRPKITFDDVLHNADYYMQEAKKLKHKADALLEKFGKAVNYADAALSFIECGNAMERDPLEAKSPYTMYSETVELIRYAMRLKNFTGSSATEGDKKLAVLCYRCLSLLYLRMFKLKKDHAMKYSRSLMEYFKNSSKASQAPSPWGGNGKSTETPSPMPLSPSPVSSAGGSAGITGSSSAGTITIPQRIHHMAASHVNITNNVLRSYEHWDMADKLTKENKEFFVDLDTVMGPLTQHSSMTNLVRYVRQGLHWLHIEAHLL"

     misc_feature    105..1820
                     /gene="AFF2"
                     /note="AF-4 proto-oncoprotein; Region: AF-4; pfam05110"
                     /db_xref="CDD:428310"
     misc_feature    <1830..2849
                     /gene="AFF2"
                     /note="104 kDa microneme/rhoptry antigen; Provisional;
                     Region: PTZ00449"
                     /db_xref="CDD:185628"
     misc_feature    3246..4034
                     /gene="AFF2"
                     /note="AF-4 proto-oncoprotein C-terminal region; Region:
                     AF-4_C; pfam18876"
                     /db_xref="CDD:436799"
     polyA_site      13420
                     /gene="AFF2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

gcagaggaaggaaggtggagctcctggtgggactcgaggcgctccgtgtctcgtgctttgccgtggagagaagcatgtgcttcccctgcagtctgctagttcactatgagcaagaccggaatgcacttaagcgaaaggaatgggagagaagaaaccaagaagtccagcaagatgaagacctctttgcttcaggttttaatctctttggggaaccctacaagacaaataaaggtgatgctcttgcaaaccgtgtccagaacacattgggaaactatgatgagatgaaggatctgctaactaaccattccaatcagagccatcttgtaggaatcccaaagaattctgtcccacagacacccatcgagaaaaatgaacagaactttttctcagaacaaagaaacagggtgatcccatctcatcagatcagtggccactcatcgacatcaatgcctccaccttcgtcactgtcatctaattctgctttgctgcacagtcaccagagcagcaggaagtcgagaacagactggtcacgcagtggtcacaactgtagtgggacccagcaaagccaatccagtagtcagcaaagtcggacaaagcatagctcttctcatgacctgccacaaggcagatatgaagacctctataattgtcagagtgagcagcataaaggtggaggaactgaggaagcaaattctatggcagcatcttcacattcaaggcggcatactcattccaagtcagcagctggagaacatacttacaaagaaaacagtcattcaaagtcacccacggagcttgagtttgtaggtcatggtcctggatctccacttccttccacatctttgttgtcttcaaacaatggtctttcaagccagaatttcccaccaggacttcactgtaaaagcagcatggtccagcaaaagcctacagcatatgttaggccgatggatggtcaggaccaggtaccgaatgactcacctgaactgaaacctcccatagaaattgagagtggatatggaaatcagtcctttggaacactgttggaaggaaaagtgaacacacctagttcaaaaaataaagtaccaaagcttaatattcctcctgttggtgaagcacagcagaggaccaacaactttgggtacaagaacagactgagttcaaaggagctgggcatatctgcaatgggagttgtgcattggatcagcaacagcgtaagtggatcgaggagtgcagcaagctgtggatcgaaggttacccttcccaatgactccagcagtgtggaagaaatactgcgtgagatgtcccattcctggcctcctcctctcactgctattcacactcctggaaaggctgaacagaccaagttttctatcccaagcaaagtacaagactcccaacatctgacctcaggatacaatgtacaaaagtggagtgatccaggagggaaagttgcaactaagtcagtgacacaaaagtcgatgcttgaggatgatctgaaactcagcagtgatgaagatgacaatgaacaggctgctgaaaagacaaaattgagaaacattcctgtaaagaagactgggaggccgattgctgtgcctgttggaggacacagcggcctgccggtgtcggtggcacatgcagctggcttagcccattccagtggtggctctgggagctccagtgagtccgagagcagctctgagtctgactccgacagtgagagcagctccagtgacagcgactgcaatgaggaatcacgcagtgccacgccagagcctgaacctccctcaacaaacaaatggcagctggataagtggctaaataaagtgaacccccacaacaagaccatcatcagcaatcaaaatgagcctcacagtgagaccagctcccagccacagaacagccagcaggctgaagggcaaaacaaagggaagctcagcaacagcctgcccccagctgattccaaagaccaggcgatcctcagtcccatccgagagaaagccaaaccacgggttgcccagaaaactccagaggcaaaaagctccaagcagaagtcgccagctcataatgagccaactgcacaaaggactactgggaaaaagcaacccaaaaaggtagaaaggacttccagtgtagaagagtataactggcccaaaccaaataataccagcaacactcccaaagaaaaagacacacaggaaccccccgagcagccaaaggttcgaactaaagcagcagttggcaagactgccccaaggaaggaacctcgaacaagcacaggtctcacttcggagaagaaaaagtacagaggccccagcaaaattgtccccaagtcccgagaatttattgaaactgattcatctacttctgactcaaatacagatcaggaggagagcctgcaggctaagatattgccagcttgtagtggaccagccaacagcatcaaagtgaaggaccctggcagtaacatcctcagtgtaagtagcttaactagcaatggcagcaacacatccatcgaccagactagcaatgacttggaggagcagctcttttctcctatcccaattgtacaaaatgaacttctgtccccactgagagaatatgaagaactcaaatctctttgggtgaaaatagaccttagtttactctctagaatacctggacaggagccttttgagaccatatctgtgaaaactgaaccaagagaggcaaatgtgaaacacagacgaccatctcgagagtcccctaccccagcagctgaaaaaacatctgcaaaatccaagaggaaacacaagtcggaaaacctggaaacctttgttgaaaccaagaagcagcgcctggaggacccttcagcttcgtgcttgctcccaccttgtatctctccaataccaaaccacagattaaccagcactaaagagagcagcagtaacttggtgaagaagatggcaaagaaaagagaagagaagctcttccctcctccattatcccccctgttggatgagcctgtgcaccgtcggcacagcaatgacaacagctccttcagccaagaaaccagtatcacaaacacctgtcagaccagcagctcttcctcctcagtttctaaacacagaaagaatgaaaataaatctaaccccaaaggaatctgtgaggaagaaacccacaatgcaccaacagccaatgctcttcttgatacgaaccatctagaaacagatatctggtctgcaatgccaactctttccaacgggaattctgagcccagaagacctaaaatcacatttgatgatgtgcttcacaatgcagattattatatgcaagaagcgaagaagctaaagcataaagcggatgcattgctggagaagttcggcaaagcagtgaattatgctgatgctgccttgtccttcatcgagtgtgggaatgctatggagcgagatccattagaagctaaatctccatacaccatgtactcagagactgtggaactcatcaggtatgcaatgagactcaagaatttcacaggctcttctgccacagaaggggacaagaaactagcagttttatgctaccgatgcttatcgcttctgtacttgagaatgtttaaactaaagaaggaccatgctatgaagtactccagatctctgatggaatattttaagaactcttcaaaagcctcacaggccccctcaccttggggcggcaatggaaagagcacagaaacaccatcacccatgcccctgagcccatcccctgtcagctctgctggaggcagtgcagggatcactggctcctcctcagcagggaccatcaccattcctcagcgcattcaccacatggctgccagccatgtcaacatcaccaacaatgttctgcgaagctacgagcactgggacatggctgacaagctgactaaggagaataaagaattctttgtggacctggacacagtgatgggacccttaacacaacacagcagtatgaccaatctggttcgttacgttcgccaaggactccactggctccacattgaggctcatttgttgtagtgactgctgccctgcttgtaacatccccattcttctacctctaccagcgcacagatgatcactggtggaactccactcatttctggaaatttattcatgtaacttcatttttattgcattttttaatatcctatctattggaagtagaagtcaccgtaaatggaacttatgactcaagagcagtatgtgttgtaccatctaatcattttcaacaattttctatgccttgtgtctcctggatcctaccgtccttatgtgctttatggaacggtacattccctgcagtattgttttaagtccttgctgccttcaagtgaaaacaaaaaagcactttgagaagatatggattcctgagaaataatacaaagcgtcttaaatatttgagggtatatatttgaagtcccttctgaaatagattagtagaacttatagctattcactcaaaatcatcttctgaacctgtaccaaacttttcaacacttaattctggtgttaatacctaacgcagtacatgactaagatttcacacttccaataggcttaatctccagaagaaaatgttgaatatcttacaggtacataatgtaagatcaccaaaggtgtttagaggtaaaaggttgaaggaatgcctcattaaagaaaaatgacacactatgcaatgaggttttgatattccattctacctgtttattgttggcttaataattttagtaggcagcacaatttattgcagtttttaggtaatttcaaaatatttgctttcatagtctccactgccattcctatactaaatctgtgaattttctttcagttttgctgttaatctcaaacaaatactcatacaagatttttcttcacagaacaatctcttcttgcatagtgagactcagtgaaagcagatcttaatgggaatgctgcattgatattgtatgtaaaactccattaataagtgtatgcagattc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