LOCUS       XM_040670643           13604 bp    mRNA    linear   VRT 01-MAR-2022
DEFINITION  PREDICTED: Gallus gallus AF4/FMR2 family member 2 (AFF2),
            transcript variant X2, mRNA.
ACCESSION   XM_040670643
VERSION     XM_040670643.1
DBLINK      BioProject: PRJNA698614
KEYWORDS    RefSeq; corrected model.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_052576.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Gallus gallus Annotation Release 106
            Annotation Version          :: 106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-302               JAENSL010000087.1  18428919-18429220   c
            303-423             JAENSL010000087.1  18387496-18387616   c
            424-1203            JAENSL010000087.1  18380183-18380962   c
            1204-1204           "N"                1-1
            1205-1314           JAENSL010000087.1  18380073-18380182   c
            1315-1380           JAENSL010000087.1  18312814-18312879   c
            1381-1452           JAENSL010000087.1  18303880-18303951   c
            1453-1497           JAENSL010000087.1  18289562-18289606   c
            1498-1590           JAENSL010000087.1  18266671-18266763   c
            1591-1627           JAENSL010000087.1  18263591-18263627   c
            1628-1679           JAENSL010000087.1  18263270-18263321   c
            1680-1731           JAENSL010000087.1  18222846-18222897   c
            1732-1769           JAENSL010000087.1  18205947-18205984   c
            1770-1811           JAENSL010000087.1  18192870-18192911   c
            1812-1974           JAENSL010000087.1  18162908-18163070   c
            1975-2994           JAENSL010000087.1  18161394-18162413   c
            2995-3116           JAENSL010000087.1  18159203-18159324   c
            3117-3345           JAENSL010000087.1  18152737-18152965   c
            3346-3485           JAENSL010000087.1  18150790-18150929   c
            3486-3549           JAENSL010000087.1  18150198-18150261   c
            3550-3686           JAENSL010000087.1  18146783-18146919   c
            3687-3758           JAENSL010000087.1  18143420-18143491   c
            3759-3852           JAENSL010000087.1  18142972-18143065   c
            3853-3902           JAENSL010000087.1  18138775-18138824   c
            3903-4117           JAENSL010000087.1  18135516-18135730   c
            4118-13604          JAENSL010000087.1  18121147-18130633   c
FEATURES             Location/Qualifiers
     source          1..13604
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /isolate="bGalGal1"
                     /db_xref="taxon:9031"
                     /chromosome="4"
                     /sex="female"
                     /tissue_type="blood"
                     /country="USA: Fayetteville"
                     /lat_lon="36.0822 N 94.1719 W"
                     /collection_date="20-May-2019"
                     /collected_by="Nick Anthony"
     gene            1..13604
                     /gene="AFF2"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 6 mRNAs, 4 ESTs, 227 long SRA reads, 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="CGNC:51728"
                     /db_xref="GeneID:422394"
     CDS             16..4239
                     /gene="AFF2"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: AF4/FMR2 family member 2
                     isoform X2"
                     /protein_id="XP_040526577.1"
                     /db_xref="GeneID:422394"
                     /db_xref="CGNC:51728"
                     /translation="

MCMCARARAAAAAVPASPSQAAAARAAGGGRRRRRTTSPGRLRGGRRGRRCPCPCPCRAASARLGAGRGYHFFESPHQIVMDLFDFFRDWDLEQQCHYEQDRNALKRKEWERRNQEVQQDEDLFASGFNLFGEPYKTNKGDALANRVQNTLGNYDEMKDLLTNHSNQSHLVGIPKNSVPQTPIEKNEQNFFSEQRNRVIPSHQISGHSSTSMPPPSSLSSNSALLHSHQSSRKSRTDWSRSGHNCSGTQQSQSSSQQSRTKHSSSHDLPQGRYEDLYNCQSEQHKGGGTEEANSMAASSHSRRHTHSKSAAGEHTYKENSHSKSPTELEFVGHGPGSPLPSTSLLSSNNGLSSQNFPPGLHCKSSMVQQKPTAYVRPMDGQDQVPNDSPELKPPIEXESGYGNQSFGTLLEGKVNTPSSKNKVPKLNIPPVGEAQQRTNNFGYKNRLSSKELGISAMGVVHWISNSVSGSRSAASCGSKVTLPNDSSSVEEILREMSHSWPPPLTAIHTPGKAEQTKFSIPSKVQDSQHLTSGYNVQKWSDPGGKVATKSVTQKSMLEDDLKLSSDEDDNEQAAEKTKLRNIPVKKTGRPIAVPVGGHSGLPVSVAHAAGLAHSSGGSGSSSESESSSESDSDSESSSSDSDCNEESRSATPEPEPPSTNKWQLDKWLNKVNPHNKTIISNQNEPHSETSSQPQNSQQAEGQNKGKLSNSLPPADSKDQAILSPIREKAKPRVAQKTPEAKSSKQKSPAHNEPTAQRTTGKKQPKKVERTSSVEEYNWPKPNNTSNTPKEKDTQEPPEQPKVRTKAAVGKTAPRKEPRTSTGLTSEKKKYRGPSKIVPKSREFIETDSSTSDSNTDQEESLQAKILPACSGPANSIKVKDPGSNILSVSSLTSNGSNTSIDQTSNDLEEQLFSPIPIVQNELLSPLREYEELKSLWVKIDLSLLSRIPGQEPFETISVKTEPREANVKHRRPSRESPTPAAEKTSAKSKRKHKSENLETFVETKKQRLEDPSASCLLPPCISPIPNHRLTSTKESSSNLVKKMAKKREEKLFPPPLSPLLDEPVHRRHSNDNSSFSQETSITNTCQTSSSSSSVSKHRKNENKSNPKGICEEETHNAPTANALLDTNHLETDIWSAMPTLSNGNSEPRRPKITFDDVLHNADYYMQEAKKLKHKADALLEKFGKAVNYADAALSFIECGNAMERDPLEAKSPYTMYSETVELIRYAMRLKNFTGSSATEGDKKLAVLCYRCLSLLYLRMFKLKKDHAMKYSRSLMEYFKNSSKASQAPSPWGGNGKSTETPSPMPLSPSPVSSAGGSAGITGSSSAGTITIPQRIHHMAASHVNITNNVLRSYEHWDMADKLTKENKEFFVDLDTVMGPLTQHSSMTNLVRYVRQGLHWLHIEAHLL"

     misc_feature    307..2022
                     /gene="AFF2"
                     /note="AF-4 proto-oncoprotein; Region: AF-4; pfam05110"
                     /db_xref="CDD:428310"
     misc_feature    <2032..3051
                     /gene="AFF2"
                     /note="104 kDa microneme/rhoptry antigen; Provisional;
                     Region: PTZ00449"
                     /db_xref="CDD:185628"
     misc_feature    3448..4236
                     /gene="AFF2"
                     /note="AF-4 proto-oncoprotein C-terminal region; Region:
                     AF-4_C; pfam18876"
                     /db_xref="CDD:436799"
     polyA_site      13604
                     /gene="AFF2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

tgagtgtgtgcgtgtatgtgtatgtgtgcgcgcgccagggccgctgccgccgctgtgcccgcctctcccagccaggcagcagccgcgcgcgctgctggcggcgggcggcggcggcggcgcaccacgagccccgggcggctccgcggcggccgccgcggccgccgctgcccgtgcccctgcccctgccgcgctgcctctgctcggctcggcgcggggagagggtaccacttcttcgagtctccgcaccagatcgtaatggacctattcgactttttcagggactgggacttagagcagcagtgtcactatgagcaagaccggaatgcacttaagcgaaaggaatgggagagaagaaaccaagaagtccagcaagatgaagacctctttgcttcaggttttaatctctttggggaaccctacaagacaaataaaggtgatgctcttgcaaaccgtgtccagaacacattgggaaactatgatgagatgaaggatctgctaactaaccattccaatcagagccatcttgtaggaatcccaaagaattctgtcccacagacacccatcgagaaaaatgaacagaactttttctcagaacaaagaaacagggtgatcccatctcatcagatcagtggccactcatcgacatcaatgcctccaccttcgtcactgtcatctaattctgctttgctgcacagtcaccagagcagcaggaagtcgagaacagactggtcacgcagtggtcacaactgtagtgggacccagcaaagccaatccagtagtcagcaaagtcggacaaagcatagctcttctcatgacctgccacaaggcagatatgaagacctctataattgtcagagtgagcagcataaaggtggaggaactgaggaagcaaattctatggcagcatcttcacattcaaggcggcatactcattccaagtcagcagctggagaacatacttacaaagaaaacagtcattcaaagtcacccacggagcttgagtttgtaggtcatggtcctggatctccacttccttccacatctttgttgtcttcaaacaatggtctttcaagccagaatttcccaccaggacttcactgtaaaagcagcatggtccagcaaaagcctacagcatatgttaggccgatggatggtcaggaccaggtaccgaatgactcacctgaactgaaacctcccatagaanttgagagtggatatggaaatcagtcctttggaacactgttggaaggaaaagtgaacacacctagttcaaaaaataaagtaccaaagcttaatattcctcctgttggtgaagcacagcagaggaccaacaactttgggtacaagaacagactgagttcaaaggagctgggcatatctgcaatgggagttgtgcattggatcagcaacagcgtaagtggatcgaggagtgcagcaagctgtggatcgaaggttacccttcccaatgactccagcagtgtggaagaaatactgcgtgagatgtcccattcctggcctcctcctctcactgctattcacactcctggaaaggctgaacagaccaagttttctatcccaagcaaagtacaagactcccaacatctgacctcaggatacaatgtacaaaagtggagtgatccaggagggaaagttgcaactaagtcagtgacacaaaagtcgatgcttgaggatgatctgaaactcagcagtgatgaagatgacaatgaacaggctgctgaaaagacaaaattgagaaacattcctgtaaagaagactgggaggccgattgctgtgcctgttggaggacacagcggcctgccggtgtcggtggcacatgcagctggcttagcccattccagtggtggctctgggagctccagtgagtccgagagcagctctgagtctgactccgacagtgagagcagctccagtgacagcgactgcaatgaggaatcacgcagtgccacgccagagcctgaacctccctcaacaaacaaatggcagctggataagtggctaaataaagtgaacccccacaacaagaccatcatcagcaatcaaaatgagcctcacagtgagaccagctcccagccacagaacagccagcaggctgaagggcaaaacaaagggaagctcagcaacagcctgcccccagctgattccaaagaccaggcgatcctcagtcccatccgagagaaagccaaaccacgggttgcccagaaaactccagaggcaaaaagctccaagcagaagtcgccagctcataatgagccaactgcacaaaggactactgggaaaaagcaacccaaaaaggtagaaaggacttccagtgtagaagagtataactggcccaaaccaaataataccagcaacactcccaaagaaaaagacacacaggaaccccccgagcagccaaaggttcgaactaaagcagcagttggcaagactgccccaaggaaggaacctcgaacaagcacaggtctcacttcggagaagaaaaagtatagaggccccagcaaaattgtccccaagtcccgagaatttattgaaactgattcatctacttctgactcaaatacagatcaggaggagagcctgcaggctaagatattgccagcttgtagtggaccagccaacagcatcaaagtgaaggaccctggcagtaacatcctcagtgtaagtagcttaactagcaatggcagcaacacatccatcgaccagactagcaatgacttggaggagcagctcttttctcctatcccaattgtacaaaatgaacttctgtccccactgagagaatatgaagaactcaaatctctttgggtgaaaatagaccttagtttactctctagaatacctggacaggagccttttgagaccatatctgtgaaaactgaaccaagagaggcaaatgtgaaacacagacgaccatctcgagagtcccctaccccagcagctgaaaaaacatctgcaaaatccaagaggaaacacaagtcggaaaacctggaaacctttgttgaaaccaagaagcagcgcctggaggacccttcagcttcgtgcttgctcccaccttgtatctctccaataccaaaccacagattaaccagcactaaagagagcagcagtaacttggtgaagaagatggcaaagaaaagagaagagaagctcttccctcctccattatcccccctgttggatgagcctgtgcaccgtcggcacagcaatgacaacagctccttcagccaagaaaccagtatcacaaacacctgtcagaccagcagctcttcctcctcagtttctaaacacagaaagaatgaaaataaatctaaccccaaaggaatctgtgaggaagaaacccacaatgcaccaacagccaatgctcttcttgatacgaaccatctagaaacagatatctggtctgcaatgccaactctttccaacgggaattctgagcccagaagacctaaaatcacatttgatgatgtgcttcacaatgcagattattatatgcaagaagcgaagaagctaaagcataaagcggatgcattgctggagaagttcggcaaagcagtgaattatgctgatgctgccttgtccttcatcgagtgtgggaatgctatggagcgagatccattagaagctaaatctccatacaccatgtactcagagactgtggaactcatcaggtatgcaatgagactcaagaatttcacaggctcttctgccacagaaggggacaagaaactagcagttttatgctaccgatgcttatcgcttctgtacttgagaatgtttaaactaaagaaggaccatgctatgaagtactccagatctctgatggaatattttaagaactcttcaaaagcctcacaggccccctcaccttggggcggcaatggaaagagcacagaaacaccatcacccatgcccctgagcccatcccctgtcagctctgctggaggcagtgcagggatcactggctcctcctcagcagggaccatcaccattcctcagcgcattcaccacatggctgccagccatgtcaacatcaccaacaatgttctgcgaagctacgagcactgggacatggctgacaagctgactaaggagaataaagaattctttgtggacctggacacagtgatgggacccttaacacaacacagcagtatgaccaatctggttcgttacgttcgccaaggactccactggctccacattgaggctcatttgttgtagtgactgctgccctgcttgtaacatccccattcttctacctctaccagcgcacagatgatcactggtggaactccactcatttctggaaatttattcatgtaacttcatttttattgcattttttaatatcctatctattggaagtagaagtcaccgtaaatggaacttatgactcaagagcagtatgtgttgtaccatctaatcattttcaacaattttctatgccttgtgtctcctggatcctaccgtccttatgtgctttatggaacggtacattccctgcagtattgttttaagtccttgctgccttcaagtgaaaacaaaaaagcactttgagaagatatggattcctgagaaataatacaaagcgtcttaaatatttgagggtatatatttgaagtcccttctgaaatagattagtagaacttatagctattcactcaaaatcatcttctgaacctgtaccaaacttttcaacacttaattctggtgttaatacctaacgcagtacatgactaagatttcacacttccaataggcttaatctccagaagaaaatgttgaatatcttacaggtacataatgtaagatcaccaaaggtgtttagaggtaaaaggttgaaggaatgcctcattaaagaaaaatgacacactatgcaatgaggttttgatattccattctacctgtttattgttggcttaataattttagtaggcagcacaatttattgcagtttttaggtaatttcaaaatatttgctt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