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Previous release (v1)
2026-01-18 23:36:03, GGRNA : RefSeq release 232 (Sep, 2025)
Summary:
Results:
Matches are highlighted with green background.
Overlapping matches are dark colored.
Cldn8" /note="claudin 8" /db_xref="GeneID:304124" /db_xref="RGD:1308575" exon 1..2250 /gene="Cldn8" /inference="alignment:Splign:2.1.0" CDS 3..680 /gene="Cldn8" /codon_start=1 /product="claudin-8" /protein_id="NP_001032863.1" /db_xref="GeneID:304124" /db_xref="RGD:1308575" /translation="MATYALQMAALVLGGVGMVGTVAVTIMPQWRVSAFIESNIVVFENRWEGLWMNCMRHANIRMQCKVYDSLLALSPDLQASRGLMCAASVLSFLAFMTAILGMKCTRCTGEDENVKSRILLTAGIIFFITGLVVLIPVSWVANAIIRDFYNPLVDVAQKRELGEALYIGWTTALVLIAGGALFCCVFCCTERSNSYKYSVPSHRTTQRSFHAEKRSPSIYSKSQYV" misc_feature 15..548 /gene="Cldn8" /note="PMP-22/EMP/MP20/Claudin family; Region:...
note="upstream in-frame stop codon" CDS 481..1200 /gene="Cldn14" /codon_start=1 /product="claudin-14" /protein_id="NP_001013447.1" /db_xref="GeneID:304073" /db_xref="RGD:1309165" /translation="MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTGIYQCQIYRSLLALPRDLQAARALMVISCLLSGMACACAVVGMKCTRCAKGTPAKTTFAVLGGALFLLAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTLLCLSCQDEGPYRPYQPQSRAGATTTATAPAYRPPAAYKDNRAPSVTSAAHSGYRLNDYV" misc_feature 547..1023 /gene="Cldn14" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN // REFERENCE 1...
Cldn17" /note="upstream in-frame stop codon" CDS 140..814 /gene="Cldn17" /codon_start=1 /product="claudin-17" /protein_id="NP_001100582.1" /db_xref="GeneID:304125" /db_xref="RGD:1307462" /translation="MAFYPVQIAGLVLGFFGLVGTVGTTLLPQWRVSAFIGSNIIIFERIWEGLWMNCIQQAMVTLQCKFYNSILALPPVLEAARALMCVAMALSLVALIIGICGMKQIECTSSSERVKAYLLGTSGVLFIVTGIFVLIPVSWTANIIIRDFYDPTIHAGQKRELGGALFLGWATAAVLFIAGGLLCGYCCCNRKEQWHGYPVSAYRVPPKDSQRKVTVPRKTSTSYV" misc_feature 155..685 /gene="Cldn17" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN // REFERENCE 1 (bases 1 to 1177)...
stop codon" CDS 103..990 /gene="Cldn23" /codon_start=1 /product="claudin-23" /protein_id="NP_001028234.1" /db_xref="GeneID:290789" /db_xref="RGD:1309001" /translation="MRTPVVMTLGMVLTPCGLLLNLVSTLAPGWRLLKGFRDQPVDVVLYQGLWDICREQSSRERECGQPDQWNYFGTQPVQVARGLMITSLATTALGLLLASLGVRCWQEEPHFGLAGLSGVVLFAAGLFSLIPVSWYNHFLADPDVLAAPAQPVTVQVSYSLVLGYLGSCLLLLGGFSLALSFAPWCEERCCRCRKAPPAGPRRSSISTVYVDWPEPALTPAIKYYSEGQHRPPPAQQRDTGKLKVGFPMPRPPPKAYTNPMDVLEGEEKKTASSQDGSSSRSTRPCQNSLPCDSDL" misc_feature 115..>513 /gene="Cldn23" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919"...
gene="Cldn19" /gene_synonym="claudin-19" /note="upstream in-frame stop codon" CDS 85..720 /gene="Cldn19" /gene_synonym="claudin-19" /codon_start=1 /product="claudin-19" /protein_id="NP_001008514.1" /db_xref="GeneID:298487" /db_xref="RGD:1305000" /translation="MANSGLQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCKLYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPTAKGRVAISGGALFLLAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWASAGLAILGGSFLCCTCPEPERANSIPQPYRSGPSTAAREYV" misc_feature 94..630 /gene="Cldn19" /gene_synonym="claudin-19" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin;...
alignment:Splign:2.1.0" CDS 119..622 /gene="Cldnd2" /gene_synonym="RGD1566413" /codon_start=1 /product="claudin domain-containing protein 2" /protein_id="NP_001102613.1" /db_xref="GeneID:499140" /db_xref="RGD:1566413" /translation="MGVKKSLQTGGNLLNLLSSVLTVLSTTTSYWIRQQGGHSGLWQECTHGVCSNMPCQNTLAVTTACMVLAAAFSIVALGMGIRIQCQEAESLRSQNTIVLLFLSGLLLLIALTVYTAKNAWKPEVFFSWSYFFGWLALPFSFIAGFCFLLADMIMQSTEAISGFPVCL" misc_feature 185..550 /gene="Cldnd2" /gene_synonym="RGD1566413" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" exon 288..428 /gene="Cldnd2" /gene_synonym...
product="claudin-12" /protein_id="NP_001094283.1" /db_xref="GeneID:5" /db_xref="RGD:1561053" /translation="MGCRDVHAATVLSFLCGIASVAGLFAGTLLPNWRKLRLITFNRNEKNLTIYTGLWVKCARYDGSSDCLMYDRTWYLSVDQLDLRVLQFALPLSILIAMGALLLCLIGMCNTAFKSSVPNIKLAKCLVNSAGCHLVAGLLFFLAGTVSLSPSIWAIFYNSHLNKKFEPVFTFDYAVFVTIASSGGLFMTALLLFVWYCACKSLSSPFWQPLYSHPPGMHTYSQPYSSRSRLSAIEIDIPVVSHST" ORIGIN // REFERENCE 1 (bases 1 to 3480) AUTHORS Castro Dias M, Coisne C, Baden P, Enzmann G, Garrett L, Becker L, Holter SM, Hrabe de Angelis M, Deutsch U and Engelhardt B. CONSRTM German Mouse Clinic Consortium TITLE Claudin-12 is not required...
note="claudin 24" /db_xref="GeneID:502083" /db_xref="RGD:1562043" CDS 1..663 /gene="Cldn24" /gene_synonym="RGD1562043" /note="claudin 22 like" /codon_start=1 /product="putative claudin-24" /protein_id="NP_001103614.1" /db_xref="GeneID:502083" /db_xref="RGD:1562043" /translation="MAFIFKTAMQSVALSLSLLGWVLAITTTYLPHWKNLNLELNEMENWTMGLWKSCVIQEEVGRQCKDFDSFLALPAELQISRILMSLSNGLGLLGLLASGCGLDCLRLGETRKGLKRRLLILGGTLLWTSGVMVLVPVSWVAHMTVQEFWDETVPEIVPRWEFGEALFLGWFAGLCLVLGGCVLHCAACWRPAPPASGHYAVAGLGDHSSYLENGTAQPKV" misc_feature 19..540 /gene="Cldn24" /gene_synonym="RGD1562043" /note="PMP-22/EMP/MP20/Claudin...
map="1q11" gene 1..660 /gene="Cldn20" /note="claudin 20" /db_xref="GeneID:680178" /db_xref="RGD:1595446" CDS 1..660 /gene="Cldn20" /codon_start=1 /product="claudin-20" /protein_id="NP_001102864.1" /db_xref="GeneID:680178" /db_xref="RGD:1595446" /translation="MASAGLQLLAFILAVSGVSGVLAATLLPNWKVNADAGSTIVTAIVQVHGLWMDCTWYSTGMFSCTLKYSILSLPVYVQAARATMVLACILSALGICTAIVGMKCTHLGGDAHTKSHISFAGGVCFITAGISALIPTVWYTKEIISNFLDLTVPESHKYEPGGAVYIGFISAMLLLIAGIIFCISYIKKNQEPWIYPPKQRLTSTWQPKNRLAYNLKDYV" misc_feature 13..543 /gene="Cldn20" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD...
stop codon" CDS 441..1100 /gene="Cldn3" /note="RVP1; ventral prostate.1 protein" /codon_start=1 /product="claudin-3" /protein_id="NP_113888.2" /db_xref="GeneID:65130" /db_xref="RGD:68425" /translation="MSMGLEITGTSLAVLGWLCTIVCCALPMWRVSAFIGSSIITAQITWEGLWMNCVVQSTGQMQCKMYDSLLALPQDLQAARALIVVSILLAAFGLLVALVGAQCTNCVQDETAKAKITIVAGVLFLLAAVLTLVPVSWSANTIIRDFYNPLVPEAQKREMGTGLYVGWAAAALQLLGGALLCCSCPPREKYAPTKILYSAPRSTGPGTGTGTAYDRKDYV" misc_feature 447..941 /gene="Cldn3" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" misc_feature 465..527 /gene="Cldn3" /note="...
gene="Cldn4" /note="upstream in-frame stop codon" CDS 192..824 /gene="Cldn4" /codon_start=1 /product="claudin-4" /protein_id="NP_001012022.1" /db_xref="GeneID:304407" /db_xref="RGD:1307932" /translation="MASMGLQVLGISLAVLGWLGVILSCSLPMWRVTAFIGSNIVTAQTSWEGLWMNCVVQSTGQMQCKMYDSMLALPQDLQAARALMVISIIVGALGMLLSVVGGKCTNCMEDETVKAKVMITAGAVFIVASMLIMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWAASGLLLLGGGLLCCNCPPRRNEKPYSAKYSAARSVPASNYV" misc_feature 201..701 /gene="Cldn4" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN // REFERENCE 1 (bases 1 to 1824) AUTHORS Jie,H...
Cldn22" /note="claudin 22" /db_xref="GeneID:306454" /db_xref="RGD:1305271" exon 1..1027 /gene="Cldn22" /inference="alignment:Splign:2.1.0" CDS 64..726 /gene="Cldn22" /codon_start=1 /product="claudin-22" /protein_id="NP_001103613.1" /db_xref="GeneID:306454" /db_xref="RGD:1305271" /translation="MGLVFRTATQSAALLLSLLGWVLSCLTNYLPHWKNLNLELNEMENWTMGLWKSCVIQEEVGRQCKDFDSFLALPAELQISRILMSLSNGLGLLGLLASGCGLDCLRLGETRKGLKRRLLILGGTLLWTSGVMVLVPVSWVAHMTVQEFWDETVPEIVPRWEFGEALFLGWFAGFCLVLGGCVLHCAACWRPAPPASGHYAVAGLGDHQQHLELKQANPEV" misc_feature <208..612 /gene="Cldn22" /note="PMP-22/EMP/MP20/Claudin family; Region...
gene="Cldn5" /note="claudin 5" /db_xref="GeneID:65131" /db_xref="RGD:68431" exon 1..1427 /gene="Cldn5" /inference="alignment:Splign:2.1.0" CDS 143..799 /gene="Cldn5" /codon_start=1 /product="claudin-5" /protein_id="NP_113889.1" /db_xref="GeneID:65131" /db_xref="RGD:68431" /translation="MGSAALEILGLVLCLVGWVGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYESVLALSAEVQAARALTVGAVLLALVALFVTLTGAQCTTCVAPGPVKARVALTGGALYALCGLLALVPLCWFANIVVREFYDPTVPVSQKYELGAALYIGWAASALLMCGGGLVCCGAWVCTGRPEFSFPVKYSAPRRTTANGDYDKKNYV" misc_feature 155..682 /gene="Cldn5" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_...
gene="Cldn6" /inference="alignment:Splign:2.1.0" CDS 132..791 /gene="Cldn6" /codon_start=1 /product="claudin-6" /protein_id="NP_001095834.1" /db_xref="GeneID:287098" /db_xref="RGD:1308837" /translation="MASTGLQILGIVLTLLGWVNALVSCALPMWKVTAFIGNSIVVAQMVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVITLLIVLLGLLLYLAGAKCTTCVEDKNSKSRLVLISGVIFVISGVLTLIPICWTAHAIIQDFYNPLVADAQKRELGASLYLGWAASGLLLIGGGLLCCACSSGGTQGPSHYVARYSSPVPHSRGPSEYPSKNYV" misc_feature 141..641 /gene="Cldn6" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN // REFERENCE 1 (bases 1 to 1550) AUTHORS...
in-frame stop codon" CDS 400..1035 /gene="Cldn7" /gene_synonym="cld-7" /codon_start=1 /product="claudin-7" /protein_id="NP_113890.1" /db_xref="GeneID:65132" /db_xref="RGD:68432" /translation="MANSGLQLLGFSMAMLGWVGLIASTAIPQWQMSSYAGDNIITAQAMYKGLWMECVTQSTGMMSCKMYDSVLALPAATQATRALMIVSLVLGFLAMFVATMGMKCTRCGGDDKVKKARIAMTGGIIFIVAGLAALVACSWIGHQIVTDFYNPLTPMNIKYEFGPAIFIGWAGSALVLLGGALLSCSCPGSESKAAYRAPRSYPKSNSSKEYV" misc_feature 409..912 /gene="Cldn7" /gene_synonym="cld-7" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; pfam00822" /db_xref="CDD:395662" misc_feature 421..483 /gene="Cldn7" /gene_...
gene="Cldn9" /note="upstream in-frame stop codon" CDS 364..1017 /gene="Cldn9" /codon_start=1 /product="claudin-9" /protein_id="NP_001011889.1" /db_xref="GeneID:287099" /db_xref="RGD:1308999" /translation="MASTGLELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVVALLLALLGLLVAITGAQCTTCVEDEGAKARIVLTAGVLLLLSGILVLIPVCWTAHAIIQDFYNPLVAEALKRELGASLYLGWAAAALLMLGGGLLCCTCPPSHFERPRGPRLGYSIPSRSGASGLDKRDYV" misc_feature 373..852 /gene="Cldn9" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN // REFERENCE 1 (bases 1 to 1432) AUTHORS...
CDS 196..819 /gene="Cldn11" /codon_start=1 /product="claudin-11" /protein_id="NP_445909.2" /db_xref="GeneID:84588" /db_xref="RGD:71081" /translation="MVATCLQVVGFVTSFVGWIGIIVTTSTNDWVVTCSYTIPTCRKMDELGSKGLWADCVMATGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGHEPGVAKYRRAQLAGVLLILLALCAIVATIWFPVCAHREITIVSFGYSLYAGWIGAVMCLVGGCVIVCCSGDAQSFGENRFYYSSGSSSPTHAKSAHV" misc_feature 199..261 /gene="Cldn11" /note="propagated from UniProtKB/Swiss-Prot (Q99P82.1); transmembrane region" misc_feature 211..711 /gene="Cldn11" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD...
Cldn34b" /inference="alignment:Splign:2.1.0" CDS 260..886 /gene="Cldn34b" /note="claudin-34; rCG36429-like" /codon_start=1 /product="claudin 34B" /protein_id="NP_001395800.1" /db_xref="GeneID:680342" /db_xref="RGD:1592987" /translation="MLMKNCHHQMGGFALTTVAWLLCCISIGLPQWQVWHYEDPVILKPTVAFVGIWRTCIFHTDSNSSNNRLCHQYSYRDSFVPLYIRINQHLLLVSSFLGLFGKITTIIALSNVSMGRVRRNATCNPFSLSGILNIIASSFLYLAVLFNYIAIVRKWRVSFPPSFHMPSHPHTQKMGSAMALAIIAAVFFLLSGTICLSSNLGKSPHSKI" misc_feature 311..850 /gene="Cldn34b" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN // REFERENCE...
gene="Cldn1" /note="claudin 1" /db_xref="GeneID:65129" /db_xref="RGD:68422" exon 1..402 /gene="Cldn1" /inference="alignment:Splign:2.1.0" CDS 180..815 /gene="Cldn1" /codon_start=1 /product="claudin-1" /protein_id="NP_113887.3" /db_xref="GeneID:65129" /db_xref="RGD:68422" /translation="MANAGLQLLGFILASLGWIGSIVSTALPQWKIYSYAGDNIVTAQAIYEGLWMSCVSQSTGQIQCKVFDSLLNLNSTLQATRALMVIGILLGLIAIFVSTIGMKCMRCLEDDEVQKMWMAVIGGIIFVISGLATLVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGALLSCSCPRKTTSYPTPRPYPKPTPSSGKDYV" misc_feature 192..725 /gene="Cldn1" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin;...
AUTHORS Linares,G.R., Brommage,R., Powell,D.R., Xing,W., Chen,S.T., Alshbool,F.Z., Lau,K.H., Wergedal,J.E. and Mohan,S. TITLE Claudin 18 is a novel negative regulator of bone resorption and osteoclast differentiation JOURNAL J Bone Miner Res 27 (7), 1553-1565 (2012) PUBMED 22437732 REFERENCE 2 (bases 1 to 1574) AUTHORS Krause,G., Winkler,L., Mueller,S.L., Haseloff,R.F., Piontek,J. and Blasig,I.E. TITLE Structure and function of claudins JOURNAL Biochim Biophys Acta 1778 (3), 631-645 (2008) PUBMED 18036336 REMARK Review article REFERENCE 3 (bases 1 to 1574) AUTHORS Fernandez,A....
CDS 349..1041 /gene="Cldn2" /gene_synonym="RGD1560247" /codon_start=1 /product="claudin-2" /protein_id="NP_001100316.1" /db_xref="GeneID:300920" /db_xref="RGD:1560247" /translation="MASLGVQLVGYILGLLGLLGTSIAMLLPNWRTSSYVGASIVTAVGFSKGLWMECATHSTGITQCDIYSTLLGLPADIQAAQAMMVTSSAMSSLACIISVVGMRCTVFCQESRAKDRVAVVGGVFFILGGILGFIPVAWNLHGILRDFYSPLVPDSMKFEIGEALYLGIISALFSLVAGVILCFSCSPQGNRTNYYDGYQAQPLATRSSPRSAQQPKAKSEFNSYSLTGYV" misc_feature 361..891 /gene="Cldn2" /gene_synonym="RGD1560247" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN // REFERENCE 1...
LOCUS NM_001109402 1008 bp mRNA linear ROD 24-JUN-2024 DEFINITION Rattus norvegicus claudin 34D (Cldn34d), mRNA. ACCESSION NM_001109402 XM_001056879 VERSION NM_001109402.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473966.2. On Oct 4, 2007 this sequence...
Cldn6" /codon_start=1 /product="claudin-6" /protein_id="NP_001426408.1" /db_xref="GeneID:287098" /db_xref="RGD:1308837" /translation="MASTGLQILGIVLTLLGWVNALVSCALPMWKVTAFIGNSIVVAQMVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVITLLIVLLGLLLYLAGAKCTTCVEDKNSKSRLVLISGVIFVISGVLTLIPICWTAHAIIQDFYNPLVADAQKRELGASLYLGWAASGLLLIGGGLLCCACSSGGTQGPSHYVARYSSPVPHSRGPSEYPSKNYV" ORIGIN // REFERENCE 1 (bases 1 to 2768) AUTHORS Harris,H.J., Davis,C., Mullins,J.G., Hu,K., Goodall,M., Farquhar,M.J., Mee,C.J., McCaffrey,K., Young,S., Drummer,H., Balfe,P. and McKeating,J.A. TITLE Claudin association with CD81 defines...
LOCUS NM_001398571 735 bp mRNA linear ROD 31-MAR-2024 DEFINITION Rattus norvegicus claudin 25 (Cldn25), mRNA. ACCESSION NM_001398571 XM_002729920 VERSION NM_001398571.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT INFERRED REFSEQ: This record is predicted by genome sequence analysis and is not yet supported by experimental evidence. The reference sequence was...
gene="Cldn15" /codon_start=1 /product="claudin-15" /protein_id="NP_001100605.1" /db_xref="GeneID:304388" /db_xref="RGD:1310678" /translation="MSIAVETFGFFMSALGLLMLGVTLPNSYWRVSTVHGNVITTNTIFENLWYSCATDSLGVSNCWDFPSMLALSGYVQGCRALMITAILLGFLGLFLGMVGLRCTNVGNIDLSRKAKLLAIAGAFHILAGACGMVAISWYAVNITTDFFNPLYVGTKYELGSALYLGWSASLLSILGGICVFSTCCCDSKEDPATRVGLPYKPSTVVTARATSDESDVSFGKYGKNAYV" misc_feature 215..283 /gene="Cldn15" /note="propagated from UniProtKB/Swiss-Prot (D3ZQJ0.1); transmembrane region" misc_feature 221..742 /gene="Cldn15" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_...
LOCUS NM_001408916 858 bp mRNA linear ROD 31-MAR-2024 DEFINITION Rattus norvegicus claudin 34C4 (Cldn34c4), mRNA. ACCESSION NM_001408916 XM_006257208 VERSION NM_001408916.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ0121.1. On Jul...
stop codon" CDS 250..1110 /gene="Cldn10" /codon_start=1 /product="claudin-10" /protein_id="NP_001099528.1" /db_xref="GeneID:290485" /db_xref="RGD:1308027" /translation="MSRAQISALVCGVGGFGALVAATTSNEWKVTTRASSVITATWVYQGLWMNCAAGSMASTALEIIAFVVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYFANLWKMCVTDSTGVANCKDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGVVFILSGLCSMTGCSLYANKITTEFFDPLFMEQKYELGAALFIGWAGASLCIIGGVIFCFSISDNNKTPRMGYTYNGPTSVMSSRTKYQGGEGDFKTTGPSKQFDKNAYV" misc_feature 424..951 /gene="Cldn10" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" exon...
LOCUS NM_001109366 3973 bp mRNA linear ROD 24-JUN-2024 DEFINITION Rattus norvegicus claudin 34A (Cldn34a), mRNA. ACCESSION NM_001109366 XM_001064790 XM_001068935 XM_039099990 VERSION NM_001109366.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
Splign:2.1.0" CDS 211..972 /gene="Cldnd1" /codon_start=1 /product="claudin domain-containing protein 1" /protein_id="NP_001006956.2" /db_xref="GeneID:288182" /db_xref="RGD:1359273" /translation="MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYQSPAQENSSDANRIAWEDFMGDEADEKTYNDALFRYNGNLGLWRRCITIPKNTHWYAPPERTESFEVVTKCMSFTLNEQFMEKYVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACVCRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLGLPKNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA" misc_feature 259..912 /gene="Cldnd1" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" exon 503..613 /gene...
product="claudin-16" /protein_id="NP_571980.2" /db_xref="GeneID:155268" /db_xref="RGD:620322" /translation="MKELLQYAACFLAIFSTGFLIVATWTDCWMVNADDSLEVSTKCRGLWWECVTNAFDGIRTCDEYDSIYAEHPLKLVVTRALMITADILAGFGFITLLLGLDCVKFLPDEPHIKVRLCFVAGTVLLIAGTPGIIGSVWYAVDVYVERSSLVLHNIFLGIQYKFGWSCWLGMAGSLGCFLAGALLTCCLYLFKDVGPERNYPYAMRKPYSTAGVSMAKSYKAPRTETAKMYAVDTRV" misc_feature 334..396 /gene="Cldn16" /gene_synonym="Pcln1; PLCN-1" /note="propagated from UniProtKB/Swiss-Prot (Q91Y55.1); transmembrane region" misc_feature 355..873 /gene="Cldn16" /gene_synonym="Pcln1; PLCN-1" /note="PMP-22/EMP/MP20/Claudin family;...
LOCUS NM_001109415 1088 bp mRNA linear ROD 01-APR-2024 DEFINITION Rattus norvegicus claudin 34E (Cldn34e), mRNA. ACCESSION NM_001109415 XM_001057406 XM_006256958 VERSION NM_001109415.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
translation="MASAGSGMEEVRVSVLTPLKLVGLVCIFLALCLDLGAVLSPAWVTADHQYYLSLWESCRKPANLDSWHCESTLGSDWQIATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLFAAVVLQVCSLVLYPIKFIETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYEDYY" misc_feature 291..740 /gene="Tmem47" /gene_synonym="RGD1564799" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" exon 457..597 /gene="Tmem47" /gene_synonym="RGD1564799" /inference="alignment:Splign:2.1.0" exon 598..4130 /gene="Tmem47" /gene_synonym="RGD1564799" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 4130) AUTHORS Bruggeman LA,...
alignment:Splign:2.1.0" misc_feature 455..457 /gene="Tmem204" /note="upstream in-frame stop codon" CDS 551..1231 /gene="Tmem204" /note="claudin-like protein 24" /codon_start=1 /product="transmembrane protein 204 precursor" /protein_id="NP_001009620.1" /db_xref="GeneID:287129" /db_xref="RGD...H., Miettinen,J., Norrmen,C., D'Amico,G., Jeltsch,M., Langenberg,T., Vandevelde,W., Ny,A., Dewerchin,M., Carmeliet,P. and Alitalo,K. TITLE Claudin-like protein 24 interacts with the VEGFR-2 and VEGFR-3 pathways and regulates lymphatic vessel development JOURNAL Genes Dev 24 (9), 875-880 (2010)...
misc_feature 195..812 /gene="Tmem182" /gene_synonym="RGD1563696" /note="PMP-22/EMP/MP20/Claudin tight junction; Region: Claudin_2; pfam13903" /db_xref="CDD:372799" exon 285..384 /gene="Tmem182" /gene_synonym="RGD1563696" /inference="alignment:Splign:2.1.0" exon 385..483 /gene="Tmem182" /gene_synonym="RGD1563696" /inference="alignment:Splign:2.1.0" exon 484..621 /gene="Tmem182" /gene_synonym="RGD1563696" /inference="alignment:Splign:2.1.0" exon 622..2708 /gene="Tmem182" /gene_synonym="RGD1563696" /inference="alignment:Splign:2.1.0" ORIGIN //...
misc_feature 209..271 /gene="Emp3" /note="propagated from UniProtKB/Swiss-Prot (Q9QYW5.1); transmembrane region" misc_feature 233..667 /gene="Emp3" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" misc_feature 335..337 /gene="Emp3" /note="N-linked (GlcNAc...) asparagine. /evidence=ECO:0000255; propagated from UniProtKB/Swiss-Prot (Q9QYW5.1); glycosylation site" misc_feature 365..367 /gene="Emp3" /note="N-linked (GlcNAc...) asparagine. /evidence=ECO:0000255; propagated from UniProtKB/Swiss-Prot (Q9QYW5.1); glycosylation site" misc_feature 395..457 /...
Adult Rat Sertoli Cells JOURNAL Biology (Basel) 11 (5), 668 (2022) PUBMED 35625396 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5148) AUTHORS Bulldan,A., Dietze,R., Shihan,M. and Scheiner-Bobis,G. TITLE Non-classical testosterone signaling mediated through ZIP9 stimulates claudin expression and tight junction formation in Sertoli cells JOURNAL Cell Signal 28 (8), 1075-1085 (2016) PUBMED 27164415 REMARK GeneRIF: in Sertoli cells, testosterone acts through the receptor ZIP9 to trigger the non-classical signaling cascade, resulting in increased claudin expression and tight...
Adult Rat Sertoli Cells JOURNAL Biology (Basel) 11 (5), 668 (2022) PUBMED 35625396 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5019) AUTHORS Bulldan,A., Dietze,R., Shihan,M. and Scheiner-Bobis,G. TITLE Non-classical testosterone signaling mediated through ZIP9 stimulates claudin expression and tight junction formation in Sertoli cells JOURNAL Cell Signal 28 (8), 1075-1085 (2016) PUBMED 27164415 REMARK GeneRIF: in Sertoli cells, testosterone acts through the receptor ZIP9 to trigger the non-classical signaling cascade, resulting in increased claudin expression and tight...
misc_feature 1175..1237 /gene="Cacng6" /note="propagated from UniProtKB/Swiss-Prot (Q8VHW7.1); transmembrane region" misc_feature 1187..1717 /gene="Cacng6" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" misc_feature 1475..1537 /gene="Cacng6" /note="propagated from UniProtKB/Swiss-Prot (Q8VHW7.1); transmembrane region" misc_feature 1553..1615 /gene="Cacng6" /note="propagated from UniProtKB/Swiss-Prot (Q8VHW7.1); transmembrane region" misc_feature 1709..1771 /gene="Cacng6" /note="propagated from UniProtKB/Swiss-Prot (Q8VHW7.1); transmembrane region"...
Adult Rat Sertoli Cells JOURNAL Biology (Basel) 11 (5), 668 (2022) PUBMED 35625396 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5152) AUTHORS Bulldan,A., Dietze,R., Shihan,M. and Scheiner-Bobis,G. TITLE Non-classical testosterone signaling mediated through ZIP9 stimulates claudin expression and tight junction formation in Sertoli cells JOURNAL Cell Signal 28 (8), 1075-1085 (2016) PUBMED 27164415 REMARK GeneRIF: in Sertoli cells, testosterone acts through the receptor ZIP9 to trigger the non-classical signaling cascade, resulting in increased claudin expression and tight...
Adult Rat Sertoli Cells JOURNAL Biology (Basel) 11 (5), 668 (2022) PUBMED 35625396 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5138) AUTHORS Bulldan,A., Dietze,R., Shihan,M. and Scheiner-Bobis,G. TITLE Non-classical testosterone signaling mediated through ZIP9 stimulates claudin expression and tight junction formation in Sertoli cells JOURNAL Cell Signal 28 (8), 1075-1085 (2016) PUBMED 27164415 REMARK GeneRIF: in Sertoli cells, testosterone acts through the receptor ZIP9 to trigger the non-classical signaling cascade, resulting in increased claudin expression and tight...
misc_feature 78..140 /gene="Cacng5" /note="propagated from UniProtKB/Swiss-Prot (Q8VHW8.1); transmembrane region" misc_feature 108..641 /gene="Cacng5" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" misc_feature 363..425 /gene="Cacng5" /note="propagated from UniProtKB/Swiss-Prot (Q8VHW8.1); transmembrane region" misc_feature 441..503 /gene="Cacng5" /note="propagated from UniProtKB/Swiss-Prot (Q8VHW8.1); transmembrane region" misc_feature 597..659 /gene="Cacng5" /note="propagated from UniProtKB/Swiss-Prot (Q8VHW8.1); transmembrane region" exon...
alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 1789) AUTHORS Maher,G.J., Hilton,E.N., Urquhart,J.E., Davidson,A.E., Spencer,H.L., Black,G.C. and Manson,F.D. TITLE The cataract-associated protein TMEM114, and TMEM235, are glycosylated transmembrane proteins that are distinct from claudin family members JOURNAL FEBS Lett 585 (14), 2187-2192 (2011) PUBMED 21689651 REFERENCE 2 (bases 1 to 1789) AUTHORS Mineta,K., Yamamoto,Y., Yamazaki,Y., Tanaka,H., Tada,Y., Saito,K., Tamura,A., Igarashi,M., Endo,T., Takeuchi,K. and Tsukita,S. TITLE Predicted expansion of the claudin multigene family...
db_xref="GeneID:171062" /db_xref="RGD:621523" /translation="MEPYRSLALLAGCLGLIFSLIALSTDFWIVATGPNFSAHSGLWPTSPGTQVAGYIHVTQVCCILAALWGLVSVSFLVLSCIPSLSAPGRGPMVSTVLSFAAALSIIVAMAVYTSERWSQPPSPQVQTFFSWSFYLGWGSAIPFLCAGCLSLGAHCRTRRTEYETL" misc_feature 205..567 /gene="Nkg7" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" exon 302..448 /gene="Nkg7" /inference="alignment:Splign:2.1.0" exon 449..583 /gene="Nkg7" /inference="alignment:Splign:2.1.0" exon 584..798 /gene="Nkg7" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 813) AUTHORS Ji,L. and...
misc_feature 41..97 /gene="Cacng1" /gene_synonym="Cacng" /note="propagated from UniProtKB/Swiss-Prot (P97707.1); transmembrane region" misc_feature 71..574 /gene="Cacng1" /gene_synonym="Cacng" /note="PMP-22/EMP/MP20/Claudin tight junction; Region: Claudin_2; pfam13903" /db_xref="CDD:372799" misc_feature 137..139 /gene="Cacng1" /gene_synonym="Cacng" /note="N-linked (GlcNAc...) asparagine. /evidence=ECO:0000255; propagated from UniProtKB/Swiss-Prot (P97707.1); glycosylation site" misc_feature 248..250 /gene="Cacng1" /gene_synonym="Cacng" /note="N-linked (GlcNAc...) asparagine. /evidence=ECO...
db_xref="RGD:1310294" /translation="MLRCGLACERCRWILPLLLLSAIAFDIIALSGRGWLQSSNHIQTSSLWWRCFDEGGGSGSYDDGCQSLMEYAWGRAAAATLFCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALAAVFQIISLVIYPVKYTQTFRLHDNPAVNYIYNWAYGFGWAATIILIGCSFFFCCLPNYEDDLLGNAKPRYFYTSA" misc_feature 207..596 /gene="Perp" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" exon 319..459 /gene="Perp" /inference="alignment:Splign:2.1.0" exon 460..1872 /gene="Perp" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 1890) AUTHORS Fouillade C, Baron-Menguy C, Domenga-Denier V, Thibault C,...
misc_feature 338..838 /gene="Tmem178b" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" exon 423..536 /gene="Tmem178b" /inference="alignment:Splign:2.1.0" exon 537..674 /gene="Tmem178b" /inference="alignment:Splign:2.1.0" exon 675..10116 /gene="Tmem178b" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 10116) AUTHORS Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D. TITLE Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium JOURNAL Brief Bioinform 12 (5), 449-462 (2011) PUBMED 21873635...
Swiss-Prot (Q68FV0.1)" misc_feature 129..266 /gene="Tmem178a" /gene_synonym="Tmem178" /note="propagated from UniProtKB/Swiss-Prot (Q68FV0.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 324..830 /gene="Tmem178a" /gene_synonym="Tmem178" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" misc_feature 480..482 /gene="Tmem178a" /gene_synonym="Tmem178" /note="N-linked (GlcNAc...) asparagine. /evidence=ECO:0000255; propagated from UniProtKB/Swiss-Prot (Q68FV0.1); glycosylation site" misc_feature 546..608 /gene="Tmem178a" /gene_...
alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 1870) AUTHORS Maher,G.J., Hilton,E.N., Urquhart,J.E., Davidson,A.E., Spencer,H.L., Black,G.C. and Manson,F.D. TITLE The cataract-associated protein TMEM114, and TMEM235, are glycosylated transmembrane proteins that are distinct from claudin family members JOURNAL FEBS Lett 585 (14), 2187-2192 (2011) PUBMED 21689651 REFERENCE 2 (bases 1 to 1870) AUTHORS Mineta,K., Yamamoto,Y., Yamazaki,Y., Tanaka,H., Tada,Y., Saito,K., Tamura,A., Igarashi,M., Endo,T., Takeuchi,K. and Tsukita,S. TITLE Predicted expansion of the claudin multigene family...
Adult Rat Sertoli Cells JOURNAL Biology (Basel) 11 (5), 668 (2022) PUBMED 35625396 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 4904) AUTHORS Bulldan,A., Dietze,R., Shihan,M. and Scheiner-Bobis,G. TITLE Non-classical testosterone signaling mediated through ZIP9 stimulates claudin expression and tight junction formation in Sertoli cells JOURNAL Cell Signal 28 (8), 1075-1085 (2016) PUBMED 27164415 REMARK GeneRIF: in Sertoli cells, testosterone acts through the receptor ZIP9 to trigger the non-classical signaling cascade, resulting in increased claudin expression and tight...
GeneID:100526624" /db_xref="miRBase:MI0015440" /db_xref="RGD:4888552" ORIGIN // REFERENCE 1 (bases 1 to 111) AUTHORS Xie,Y., Tan,J., Qin,Y., Cao,Y., Wang,Y., Li,A., Wang,Z., Qiao,Z. and Yan,Z. TITLE MiR-3571 modulates the proliferation and migration of vascular smooth muscle cells by targeting claudin 1 JOURNAL Int J Med Sci 19 (3), 511-524 (2022) PUBMED 35370461 REMARK GeneRIF: MiR-3571 modulates the proliferation and migration of vascular smooth muscle cells by targeting claudin 1. Publication Status: Online-Only REFERENCE 2 (bases 1 to 111) AUTHORS Qian,L., Wythe,J.D., Liu,J., Cartry,J.,...
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0.000 | 0.000 | search_start;
0.083 | 0.083 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:claudin)%7C(nt:claudin)%7C(aa:claudin))?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.181 | 0.098 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:claudin)%7C(nt:claudin)%7C(aa:claudin))?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.187 | 0.006 | cgi_end;
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