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Previous release (v1)
2024-04-19 20:22:44, GGRNA : RefSeq release 222 (Jan, 2024)
Summary:
Results:
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Overlapping matches are dark colored.
Hominidae; Homo. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from AF177340.1, AK075405.1 and AA973123.1. Summary: This gene product belongs to the claudin protein family whose members have been identified as major integral membrane proteins localized exclusively at tight junctions. Claudins are expressed in an organ-specific manner and regulate tissue-specific physiologic properties of tight junctions. This protein is expressed in the intestine. Alternatively spliced transcript variants with different 5' untranslated region...
This record has been curated by NCBI staff. The reference sequence was derived from AK312515.1, AK075405.1 and AA973123.1. On Aug 13, 2020 this sequence version replaced NM_001171095.1. Summary: This gene product belongs to the claudin protein family whose members have been identified as major integral membrane proteins localized exclusively at tight junctions. Claudins are expressed in an organ-specific manner and regulate tissue-specific physiologic properties of tight junctions. This protein is expressed in the intestine. Alternatively spliced transcript variants with different 5'...
was derived from DA743944.1, AK075405.1 and AA973123.1. This sequence is a reference standard in the RefSeqGene project. On Jun 2, 2019 this sequence version replaced NM_020384.3. Summary: This gene product belongs to the claudin protein family whose members have been identified as major integral membrane proteins localized exclusively at tight junctions. Claudins are expressed in an organ-specific manner and regulate tissue-specific physiologic properties of tight junctions. This protein is expressed in the intestine. Alternatively spliced transcript variants with different 5' untranslated...
Hominidae; Homo. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from CV575841.1, AC003688.1 and BC071844.1. On Aug 14, 2020 this sequence version replaced NM_001185023.1. Summary: This gene encodes a member of the claudin family. Claudins are integral membrane proteins and components of tight junction strands. Tight junction strands serve as a physical barrier to prevent solutes and water from passing freely through the paracellular space between epithelial or endothelial cell sheets, and also play critical roles in maintaining...
Synonym: CEPTRL2;
claudin-1; CLDN-7; CPETRL2; Hs.84359
NM_001185023.2 -
Homo sapiens (human) -
NCBI -
UCSC -
RefEx(expression)
Hominidae; Homo. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from AC003688.1, AJ011497.1 and BC071844.1. On Aug 14, 2020 this sequence version replaced NM_001185022.1. Summary: This gene encodes a member of the claudin family. Claudins are integral membrane proteins and components of tight junction strands. Tight junction strands serve as a physical barrier to prevent solutes and water from passing freely through the paracellular space between epithelial or endothelial cell sheets, and also play critical roles in maintaining...
Synonym: CEPTRL2;
claudin-1; CLDN-7; CPETRL2; Hs.84359
NM_001185022.2 -
Homo sapiens (human) -
NCBI -
UCSC -
RefEx(expression)
Hominidae; Homo. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from CV575841.1, AC003688.1 and BC071844.1. On Nov 23, 2018 this sequence version replaced NM_001307.5. Summary: This gene encodes a member of the claudin family. Claudins are integral membrane proteins and components of tight junction strands. Tight junction strands serve as a physical barrier to prevent solutes and water from passing freely through the paracellular space between epithelial or endothelial cell sheets, and also play critical roles in maintaining...
CDS 352..993 /gene="cldn3" /gene_synonym="claudin-3; cpe-r2; cpetr2; hrvp1; rvp1" /codon_start=1 /product="claudin-3" /protein_id="NP_001005709.1" /db_xref="GeneID:448229" /db_xref="Xenbase:XB-GENE-972426" /translation="MSMGLEILGVALSIVGWLGTVISCALPMWRVTAFIGNNIVVAQTIWEGLWMNCVVQSTGQMQCKMYDSLLALPQDLQAARALMVISIVIAVLGVLISIIGAKCTNCVQDESAKAKIMIVSGVIFILSGLMTLIPVSWSANTIIRDFYNPLVVDAQKRELGSSMYIGWAASALLMLGGAMLCCSCPPKEKYPTSRVAYSAARSTNPGYDRKDYV" misc_feature 358..891 /gene="cldn3" /gene_synonym="claudin-3; cpe-r2; cpetr2; hrvp1; rvp1" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db...
Synonym:
claudin-3; cpe-r2; cpetr2; hrvp1; rvp1
NM_001005709.1 -
Xenopus tropicalis (tropical clawed frog) -
NCBI
gene="cldn5" /gene_synonym="awal; bec1; claudin-5; cpetrl1; tmvcf" /codon_start=1 /product="claudin-5" /protein_id="NP_001006707.1" /db_xref="GeneID:448343" /db_xref="Xenbase:XB-GENE-976044" /translation="MASAAIEILGLSLSILGWVGVILACGLPMWQVSAFIENNIVVAQIIWEGLWMSCVVQSTGQMQCKVYDSILALSQELQAGRALTVMASIVGLIGLLVTIVGAKCTNCLQGNSAKGRVLLAGGVIYILCGILVLIPLCWIANIIITEFYDPRVPASQKREMGAALYVGWAATALLLLGGSLLCCSFAMKDGISNLPVKYSAPRMPTSNGDYDKKNYV" misc_feature 179..676 /gene="cldn5" /gene_synonym="awal; bec1; claudin-5; cpetrl1; tmvcf" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD...
Synonym: awal; bec1;
claudin-5; cpetrl1; tmvcf
NM_001006706.1 -
Xenopus tropicalis (tropical clawed frog) -
NCBI
AF358908.1, SRR10915302.2005862.1 [ECO:0000345] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1006 /organism="Canis lupus familiaris" /mol_type="mRNA" /sub_species="familiaris" /db_xref="taxon:9615" /chromosome="6" /map="6" gene 1..1006 /gene="CLDN3" /gene_synonym="Claudin-3" /note="claudin 3" /db_xref="GeneID:403648" /db_xref="VGNC:VGNC:39319" exon 1..1006 /gene="CLDN3" /gene_synonym="Claudin-3" /inference="alignment:Splign:2.1.0" misc_feature 56..58 /gene="CLDN3" /gene_synonym="Claudin-3" /note="upstream in-frame stop codon" CDS 209..865 /gene="CLDN3" /gene_synonym="Claudin...
Synonym:
Claudin-3
NM_001003088.1 -
Canis lupus familiaris (dog) -
NCBI
="claudin-11" /note="upstream in-frame stop codon" CDS 200..823 /gene="CLDN11" /gene_synonym="claudin-11" /note="claudin 11 (oligodendrocyte transmembrane protein)" /codon_start=1 /product="claudin-11" /protein_id="NP_001233342.1" /db_xref="GeneID:460846" /db_xref="VGNC:VGNC:1780" /translation="MVATFLQVVGFVTSFVGWIGVIVTTSTNDWVVTCGYTIPTCRKLDELGSKGLWADCVMATGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRRAQLAGVLLILLALCALVATIWFPVCAHRETTIVSFGYSLYAGWIGAVLCLVGGCVILCCAGDAQAFGENRFYYTAGSSSPTHAKSAHV" misc_feature 215..715 /gene="CLDN11" /gene_synonym="claudin-11" /note="PMP-22/EMP/MP20/Claudin...
Synonym:
claudin-11
NM_001246413.1 -
Pan troglodytes (chimpanzee) -
NCBI
Murinae; Mus; Mus. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from BY110541.1, AK005088.1 and BB798247.1. On Aug 10, 2010 this sequence version replaced NM_008770.2. Summary: This gene encodes a member of the claudin family. Claudins are integral membrane proteins and components of tight junction strands. Tight junction strands serve as a physical barrier to prevent solutes and water from passing freely through the paracellular space between epithelial or endothelial cell sheets, and also play critical roles in maintaining...
gene="CLDN22" /gene_synonym="claudin-22" /note="upstream in-frame stop codon" CDS 558..1217 /gene="CLDN22" /gene_synonym="claudin-22" /codon_start=1 /product="claudin-22" /protein_id="NP_001252773.1" /db_xref="GeneID:701348" /translation="MALVFRTVAQLAGVSLSLLGWVLSCLTNYLPHWKNLNLDLNEMENWTMGLWQTCVTQEEVGMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGEGQRDLKRRLLILGGVLSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLNCAACSSHALLASGHHAVAQMQDHHQLETRNTNLKN" misc_feature 585..1073 /gene="CLDN22" /gene_synonym="claudin-22" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_...
Synonym:
claudin-22
NM_001265844.1 -
Macaca mulatta (Rhesus monkey) -
NCBI
CGNC:13756" /db_xref="GeneID:418790" CDS 16..582 /gene="CLDN10" /gene_synonym="claudin-10" /codon_start=1 /product="claudin-10 isoform X1" /protein_id="XP_046764109.1" /db_xref="GeneID:418790" /db_xref="CGNC:13756" /translation="MLISLELWQNEALLLELDFGQRFLKYVCNAAERGYIQACRGLMISAVCLGFFGSVFGLVGMKCTKIGGSDQNKARIACLAGLIFILCGLCSMTGCSLYAHRITSEFFDPSFVAQKYELGAALFIGWAGASLCIIGGSIFCFSIAENSKSPRRAYAYNGAASVMSSRTKIHNSVPDKTSPKHFDKNAYV" misc_feature <100..432 /gene="CLDN10" /gene_synonym="claudin-10" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" polyA_site 843 /gene="...
Synonym:
claudin-10
XM_046908153.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
CGNC:13756" /db_xref="GeneID:418790" CDS 16..582 /gene="CLDN10" /gene_synonym="claudin-10" /codon_start=1 /product="claudin-10 isoform X1" /protein_id="XP_046797288.1" /db_xref="GeneID:418790" /db_xref="CGNC:13756" /translation="MLISLELWQNEALLLELDFGQRFLKYVCNAADRGYIQACRGLMISAVCLGFFGSVFGLVGMKCTKIGGSDQNKARIACLAGLIFILCGLCSMTGCSLYAHRITSEFFDPSFVAQKYELGAALFIGWAGASLCIIGGSIFCFSIAENSKSPRRAYAYNGAASVMSSRTKIHNSVPDKTSPKHFDKNAYV" misc_feature <100..432 /gene="CLDN10" /gene_synonym="claudin-10" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" polyA_site 843 /gene="...
Synonym:
claudin-10
XM_046941332.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
gene="Cldn4" /note="upstream in-frame stop codon" CDS 192..824 /gene="Cldn4" /codon_start=1 /product="claudin-4" /protein_id="NP_001012022.1" /db_xref="GeneID:304407" /db_xref="RGD:1307932" /translation="MASMGLQVLGISLAVLGWLGVILSCSLPMWRVTAFIGSNIVTAQTSWEGLWMNCVVQSTGQMQCKMYDSMLALPQDLQAARALMVISIIVGALGMLLSVVGGKCTNCMEDETVKAKVMITAGAVFIVASMLIMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWAASGLLLLGGGLLCCNCPPRRNEKPYSAKYSAARSVPASNYV" misc_feature 201..701 /gene="Cldn4" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN // REFERENCE 1 (bases 1 to 1824) AUTHORS Ren Q,...
misc_feature 257..319 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /note="propagated from UniProtKB/Swiss-Prot (Q9CQX5.1); transmembrane region" misc_feature 293..946 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" misc_feature 368..370 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /note="N-linked (GlcNAc...) asparagine. /evidence=ECO:0000269|PubMed:19349973; propagated from UniProtKB/Swiss-Prot (Q9CQX5.1); glycosylation site" misc_feature...
misc_feature 272..334 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /note="propagated from UniProtKB/Swiss-Prot (Q9CQX5.1); transmembrane region" misc_feature 308..961 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" misc_feature 383..385 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /note="N-linked (GlcNAc...) asparagine. /evidence=ECO:0000269|PubMed:19349973; propagated from UniProtKB/Swiss-Prot (Q9CQX5.1); glycosylation site" misc_feature...
gene="CLDN3" /gene_synonym="claudin-3" /inference="alignment:Splign:2.1.0" CDS 87..731 /gene="CLDN3" /gene_synonym="claudin-3" /codon_start=1 /product="claudin-3" /protein_id="NP_989533.1" /db_xref="CGNC:49012" /db_xref="GeneID:374029" /translation="MSMGLEIGGVALSVLGWLCSIICCALPMWRVTAFIGNNIVTAQIIWEGLWMNCVVQSTGQMQCKVYDSMLALPQDLQAARALLVVAIVLAVLGLMVAIVGAQCTRCVEDETTKAKITIVSGVIFLLSGIMTLIPVSWSANTIIRDFYNPLVIDAQKRELGTSLYVGWAASALLLFGGALLCCSCPPKDERYAPSKVAYSAPRSAVTSYDKRNYV" misc_feature 93..593 /gene="CLDN3" /gene_synonym="claudin-3" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /...
Synonym:
claudin-3
NM_204202.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
protein 1; claudin 25" /codon_start=1 /product="claudin domain-containing protein 1 isoform 2" /protein_id="NP_001239379.1" /db_xref="GeneID:224250" /db_xref="MGI:MGI:2447860" /translation="MGGDRLENKTSVSVASWSSLNARMDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPIQENSSDSNKIAWEDFLGDEADEKTYNDVLFRYNGSLGLWRRCITIPKNTHWYAPPERTESFDVVTKCMSFTLNEQFMEKYVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTLATGILHLLAGLCTLGSVSCYVAGIELLHQKVELPKDVSGEFGWSFCLACVSAPLQFMAAALFIWAAHTNRKEYTLMKAYRVA" misc_feature 286..939 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /note="PMP-22/EMP/MP20/Claudin family; Region...
variant 3; claudin domain-containing protein 1; claudin 25" /codon_start=1 /product="claudin domain-containing protein 1 isoform 3" /protein_id="NP_001239380.1" /db_xref="GeneID:224250" /db_xref="MGI:MGI:2447860" /translation="MGGDRLENKTSVSVASWSSLNARMDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPIQENSSDSNKIAWEDFLGDEADEKTYNDVLFRYNGSLGLWRRCITIPKNTHWYAPPERTESFDVVTKCMSFTLNEQFMEKYVDPGNHNSGIDLLRTCLCTLGSVSCYVAGIELLHQKVELPKDVSGEFGWSFCLACVSAPLQFMAAALFIWAAHTNRKEYTLMKAYRVA" misc_feature <616..798 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_...
CDS 272..964 /gene="CLDN2" /gene_synonym="claudin-2; OAZON" /codon_start=1 /product="claudin-2 isoform X1" /protein_id="XP_054184059.1" /db_xref="GeneID:9075" /db_xref="HGNC:HGNC:2041" /db_xref="MIM:300520" /translation="MASLGLQLVGYILGLLGLLGTLVAMLLPSWKTSSYVGASIVTAVGFSKGLWMECATHSTGITQCDIYSTLLGLPADIQAAQAMMVTSSAISSLACIISVVGMRCTVFCQESRAKDRVAVAGGVFFILGGLLGFIPVAWNLHGILRDFYSPLVPDSMKFEIGEALYLGIISSLFSLIAGIILCFSCSSQRNRSNYYDAYQAQPLATRSSPRPGQPPKVKSEFNSYSLTGYV" misc_feature 338..814 /gene="CLDN2" /gene_synonym="claudin-2; OAZON" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_...
CDS 492..1184 /gene="CLDN2" /gene_synonym="claudin-2; OAZON" /codon_start=1 /product="claudin-2 isoform X1" /protein_id="XP_054184060.1" /db_xref="GeneID:9075" /db_xref="HGNC:HGNC:2041" /db_xref="MIM:300520" /translation="MASLGLQLVGYILGLLGLLGTLVAMLLPSWKTSSYVGASIVTAVGFSKGLWMECATHSTGITQCDIYSTLLGLPADIQAAQAMMVTSSAISSLACIISVVGMRCTVFCQESRAKDRVAVAGGVFFILGGLLGFIPVAWNLHGILRDFYSPLVPDSMKFEIGEALYLGIISSLFSLIAGIILCFSCSSQRNRSNYYDAYQAQPLATRSSPRPGQPPKVKSEFNSYSLTGYV" misc_feature 558..1034 /gene="CLDN2" /gene_synonym="claudin-2; OAZON" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_...
variant 2" /codon_start=1 /product="claudin-10 isoform 2 precursor" /protein_id="NP_001264697.1" /db_xref="CGNC:13756" /db_xref="GeneID:418790" /translation="MASTSAEIVAFLLTISGWVLVSSTLPTDYWKVSSIDGTVITTATFWANLWKTCVTDSTGVSNCKDFPSMLALDARIACLAGLIFILCGLCSMTGCSLYAHRITSEFFDPSFVAQKYELGAALFIGWAGASLCIIGGSIFCFSIAENSKSPRRAYAYNGAASVMSSRTKIHNSVPDKTSPKHFDKNAYV" sig_peptide 11..79 /gene="CLDN10" /gene_synonym="claudin-10" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 29..427 /gene="CLDN10" /gene_synonym="claudin-10" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin;...
Synonym:
claudin-10
NM_001277768.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
claudin 16 (Cldn16), mRNA. ACCESSION NM_053241 VERSION NM_053241.5 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from AK085268.1 and AK085333.1. On Aug 11, 2010 this sequence version replaced NM_053241.4. Summary: This gene encodes a member of the claudin family. Claudins...
gene_synonym="claudin-10" /inference="alignment:Splign:2.1.0" CDS 123..659 /gene="CLDN10" /gene_synonym="claudin-10" /note="isoform 3 is encoded by transcript variant 3" /codon_start=1 /product="claudin-10 isoform 3" /protein_id="NP_001264698.1" /db_xref="CGNC:13756" /db_xref="GeneID:418790" /translation="MNCAGNALGAFHCRPHLTIFKVEGYIQACRGLMISAVCLGFFGSVFGLVGMKCTKIGGSDQNKARIACLAGLIFILCGLCSMTGCSLYAHRITSEFFDPSFVAQKYELGAALFIGWAGASLCIIGGSIFCFSIAENSKSPRRAYAYNGAASVMSSRTKIHNSVPDKTSPKHFDKNAYV" misc_feature <180..509 /gene="CLDN10" /gene_synonym="claudin-10" /note="PMP-22/EMP/MP20/Claudin family; Region:...
Synonym:
claudin-10
NM_001277769.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
xref="RGD:1305000" CDS 413..1087 /gene="Cldn19" /gene_synonym="claudin-19" /codon_start=1 /product="claudin-19 isoform X1" /protein_id="XP_006238818.1" /db_xref="GeneID:298487" /db_xref="RGD:1305000" /translation="MANSGLQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCKLYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPTAKGRVAISGGALFLLAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWASAGLAILGGSFLCCTCPEPERANSIPQPYRSGPSTAAREPVVKLSTSVKGPLGV" misc_feature 422..958 /gene="Cldn19" /gene_synonym="claudin-19" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326"...
product="claudin-10 isoform 1 precursor" /protein_id="NP_001264696.1" /db_xref="CGNC:13756" /db_xref="GeneID:418790" /translation="MASTSAEIVAFLLTISGWVLVSSTLPTDYWKVSSIDGTVITTATFWANLWKTCVTDSTGVSNCKDFPSMLALDGYIQACRGLMISAVCLGFFGSVFGLVGMKCTKIGGSDQNKARIACLAGLIFILCGLCSMTGCSLYAHRITSEFFDPSFVAQKYELGAALFIGWAGASLCIIGGSIFCFSIAENSKSPRRAYAYNGAASVMSSRTKIHNSVPDKTSPKHFDKNAYV" sig_peptide 24..92 /gene="CLDN10" /gene_synonym="claudin-10" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 42..560 /gene="CLDN10" /gene_synonym="claudin-10" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_...
Synonym:
claudin-10
NM_001277767.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
08Rik; claudin-25; Cldn25" /inference="alignment:Splign:2.1.0" exon 486..596 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /inference="alignment:Splign:2.1.0" exon 597..734 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /inference="alignment:Splign:2.1.0" exon 735..2143 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2143) AUTHORS Ohnishi M, Ochiai H, Matsuoka K, Akagi M, Nakayama Y, Shima A, Uda A, Matsuoka H, Kamishikiryo J, Michihara A and Inoue A. TITLE Claudin domain...
synonym="cb388; claudin7; cldn7; fd19f08; wu:fd19f08" /note="claudin-like protein ZF4A22; claudin-7" /codon_start=1 /product="claudin-7-B" /protein_id="NP_571712.1" /db_xref="GeneID:60635" /db_xref="ZFIN:ZDB-GENE-001103-5" /translation="MAHKGLQLLGFTLSLLGLIGLIIGTIMPQWKMSAYVGDNIITAIAMYQGLWMSCAYQSTGQQQCKVYDSVLQLDSALQATRALMVVAILLTVAGLGVASMGMKCTNCGGDDKVKKSRIAMTGGIILSVGALCSIVACGWFTSQIIRDFYNPFTPVNTKYEFGAAIFIAWAGAFLDIMGGGMLASSCSKGQSSPNYPKSSRPVKSSRPPSSSKEYV" misc_feature 190..726 /gene="cldn7b" /gene_synonym="cb388; claudin7; cldn7; fd19f08; wu:fd19f08" /note="PMP-22/EMP/MP20/Claudin family; Region:...
Synonym: cb388;
claudin7; cldn7; fd19f08; wu:fd19f08
NM_131637.2 -
Danio rerio (zebrafish) -
NCBI -
UCSC
exon 176..485 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /inference="alignment:Splign:2.1.0" exon 486..596 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /inference="alignment:Splign:2.1.0" exon 597..2005 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2005) AUTHORS Ohnishi M, Ochiai H, Matsuoka K, Akagi M, Nakayama Y, Shima A, Uda A, Matsuoka H, Kamishikiryo J, Michihara A and Inoue A. TITLE Claudin domain containing 1 contributing to endothelial cell adhesion...
note="claudin 4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins" /db_xref="GeneID:130017544" CDS 1..630 /gene="CLDN4" /codon_start=1 /product="claudin-4" /protein_id="XP_055964215.1" /db_xref="GeneID:130017544" /translation="MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTGQMQCKVYDSLLALPQDLQAARALIVISIVVAVLGVLLSVVGGKCTNCVEDEGAKAKTMIVAGVVFLLAGLLVMVPVSWTAHNVIRDFYNPLVSAGQKREMGAGLYIGWAASGLLLLGGALLCCNCPPRADKPYSAKYSAARSGPASNYV" misc_feature 10..504 /gene="CLDN4" /note="PMP-22/EMP/MP20/Claudin family...
XM_056108240.1 -
Sorex fumeus (smoky shrew) -
NCBI
note="claudin 7; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins" /db_xref="GeneID:130024430" CDS 1..636 /gene="CLDN7" /codon_start=1 /product="claudin-7" /protein_id="XP_055971146.1" /db_xref="GeneID:130024430" /translation="MANSGLQLLGFAMALLGWVALLACTAIPQWQMSSFAGDNIITSQAMYKGLWMECAIQSTGVMNCKIYDSVLALPASLQATRALMVVSLVLGFMAMIVATMGMKCTNCGGDDKVKKARIAMTGGIIFIVAGLAALIACSWSGNQIVRDFYNPLVPMNVKFEFGPAIFIGWAGSALVLLGGGLLSCSCPRSESKPAYHAPRSYPKPNSAKEYV" misc_feature 10..519 /gene="CLDN7" /note="PMP-22/EMP/MP20/Claudin...
XM_056115171.1 -
Sorex fumeus (smoky shrew) -
NCBI
map="13" /breed="mixed" gene 1..1741 /gene="CLDN16" /note="claudin 16" /db_xref="GeneID:100302019" CDS 242..949 /gene="CLDN16" /codon_start=1 /product="claudin-16" /protein_id="NP_001155116.2" /db_xref="GeneID:100302019" /translation="MRDLLQYVACFFALFSTGFLVVATWTDCWMVNADDSLEVSTKCRGLWWECVTNAFDGIRTCDEYDSILAEHPLKLVVTRALMITADVLAGFGFIILLLGLDCVKFLPDEPYIKVRICFVAGTTLLIAGAPGIIGSVWYAVDVYVERTSLILHNIFLGIQYKFGWSCWLGMAGSLGCFLAGAVLTCCLYLFKDVGLERNYPYSMRKAYSTTAVSMAKSYVAPRTQTAKMYAVDTRV" misc_feature 272..790 /gene="CLDN16" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD...
NM_001161644.2 -
Sus scrofa (pig) -
NCBI
note="claudin 11; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins" /db_xref="GeneID:130020093" CDS 6..629 /gene="CLDN11" /codon_start=1 /product="claudin-11" /protein_id="XP_055966711.1" /db_xref="GeneID:130020093" /translation="MVATCLQVVGFVTSFVGWIGIIVTTSTNDWVVTCGYTIPTCRKLDELGSKGLWADCVMATGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGHEPGVAKYRRAQLAGVLLILLALCAIVATIWFPVCAHRETTIVSFGYSLYAGWIGAVMCLVGGCVIVCCSGDAQSFGENRFYYSSGSSSPTHAKSAHV" misc_feature 21..521 /gene="CLDN11" /note="PMP-22/EMP/MP20/Claudin...
XM_056110736.1 -
Sorex fumeus (smoky shrew) -
NCBI
e="claudin 9; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins" /db_xref="GeneID:130042814" CDS 53..706 /gene="CLDN9" /codon_start=1 /product="claudin-9" /protein_id="XP_055990993.1" /db_xref="GeneID:130042814" /translation="MASTGLELLGMSLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVVALLLALLGLLVAITGAQCTTCVEDEGAKARIELTAGVVLLLAGVLVLIPVCWTAHAIIQDFYNPLVAEALKRELGASLYLGWAAAALLMLGGGLLCCSCPPPHLDRARGPRLGYSIPSRSGASGLDKRDYV" misc_feature 62..541 /gene="CLDN9" /note="PMP-22/EMP/MP20/Claudin...
XM_056135018.1 -
Sorex fumeus (smoky shrew) -
NCBI
note="claudin 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins" /db_xref="GeneID:130030366" CDS 60..695 /gene="CLDN1" /codon_start=1 /product="claudin-1" /protein_id="XP_055977598.1" /db_xref="GeneID:130030366" /translation="MANAGLQLLGFILAFLGWIGAIVSTALPQWKIYSYAGDNIVTAQAIYEGLWMSCVSQSTGQIQCKVFDSLLNLNSTLQATRALMVIGILLGVIAICVATVGMKCMKCLEDDEVQKMRMAVVGGVIFLIAGLALLVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGALLCCSCPRKTTSYPTPRPYPKPTPSSGKDYV" misc_feature 72..578 /gene="CLDN1" /note="PMP-22/EMP/MP20/Claudin...
XM_056121623.1 -
Sorex fumeus (smoky shrew) -
NCBI
upstream in-frame stop codon" CDS 321..1022 /gene="cldn15.1" /codon_start=1 /product="claudin-15" /protein_id="NP_001096379.1" /db_xref="GeneID:100124975" /db_xref="Xenbase:XB-GENE-994817" /translation="MSVILETIGFFFGVIGSTMLGITLFNANWRVSSVDGNVITTSTLFENLWMSCATDSTGVYNCREFPSLLALSGYLQASRALMITSLVFGFFSCLLGMIGLQCTKVAEDNPVVKGKLATAAGAISIFGGLCAGIAVSWYAFNITKDFFNPLYPGTKYEIGPALYLGWSGALLDIVGGAILCCSYKTQVSAAKNKYTYNYRAPMTVSSAKAAPQATLPRYESSNSICKYGKNAYV" misc_feature 321..857 /gene="cldn15.1" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN // REFERENCE 1...
NM_001102909.1 -
Xenopus tropicalis (tropical clawed frog) -
NCBI
"claudin 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins" /db_xref="GeneID:130017542" CDS 164..823 /gene="CLDN3" /codon_start=1 /product="claudin-3" /protein_id="XP_055964213.1" /db_xref="GeneID:130017542" /translation="MSMGLEITGTSLAVLGWLGTIVCCALPMWRVSAFIGSSIITAQTIWEGLWMNCVVQSTGQMQCKVYDSLLALPQDLQAARALLVVAILLAAFGLLVALVGAQCTNCVQDDTAKAKITIVAGVLFLLAALLTLVPVSWSANTIIRDFYNPLVPEAQKREMGAGLYVGWAAAALQLLGGALLCCSCPPRDKYAPTKIVYSAPRSAAPHTAPSTSYDRKDYV" misc_feature 170..664 /gene="CLDN3" /note="PMP-22/EMP/MP20/Claudin...
XM_056108238.1 -
Sorex fumeus (smoky shrew) -
NCBI
similarity to: 28 Proteins" /db_xref="GeneID:130042813" CDS 240..905 /gene="CLDN6" /codon_start=1 /product="claudin-6" /protein_id="XP_055990992.1" /db_xref="GeneID:130042813" /translation="MASAGLQILGVVLALLGWVIALVSCALPLWKVTAFIGSSIVVAQVVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVVALLLALLALLVYVAGAKCTTCVEDKDSKARLVLSSGAVFIFSGILVLIPVCWTAHVIIRDFYNPLVVEAQKRELGASLYLGWAASGLLLLGGGLLCCTCPSGVSRGSSHYMARYSASAPRGPAQGPSEYPTKNYV" misc_feature 252..749 /gene="CLDN6" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN //...
XM_056135017.1 -
Sorex fumeus (smoky shrew) -
NCBI
similarity to: 11 Proteins" /db_xref="GeneID:130018656" CDS 1..678 /gene="CLDN8" /codon_start=1 /product="claudin-8" /protein_id="XP_055965415.1" /db_xref="GeneID:130018656" /translation="MASYAIQMAGLVLGGVGMVGTIAITIMPQWRVSAFIGSNIVVFETLWEGLWMNCMRHANIRMQCKVYDSLLALPSDLQASRGLMCAACVLAFLAFMTAVLGMKCTRCTGEDQRVKGYILLTAGIVFIVTGVVVLIPVSWVANSIIRDFYNPIVDAAQKRELGEALYLGWTTALVLIAGGALFCCVSCSNGKSGSYRYSIPSHRTTPKSYHTGKKSPSEYSKSQYV" misc_feature 13..546 /gene="CLDN8" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN //...
XM_056109440.1 -
Sorex fumeus (smoky shrew) -
NCBI
culus claudin 2 (Cldn2), transcript variant 1, mRNA. ACCESSION NM_016675 VERSION NM_016675.5 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from AL672243.12. On Aug 8, 2022 this sequence version replaced NM_016675.4. Summary: This gene encodes a member of the claudin family. Claudins are...
similarity to: 6 Proteins" /db_xref="GeneID:130018666" CDS 1..675 /gene="CLDN17" /codon_start=1 /product="claudin-17" /protein_id="XP_055965441.1" /db_xref="GeneID:130018666" /translation="MAFYPLQIAGLVLGFFGLVGTLATTLLPQWRVSAFVGSNIIVFERVWEGLWMNCIRQARVRLQCKFYSSLLALPPVLEAARALMCVAVVLAFIALLIGICGMKQIQCTGANDRAKAYLLGTSGVLFIVTGIFVLIPVCWTANIIIRDFYNPAVHVGQKRELGAALFLGWASTAVLFIAGGLLCGYCCCNRKKQRFRYPAPAYNMPHRDANRNTNMVSKTTTSYV" misc_feature 16..546 /gene="CLDN17" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN //...
XM_056109466.1 -
Sorex fumeus (smoky shrew) -
NCBI
similarity to: 13 Proteins" /db_xref="GeneID:130034233" CDS 330..1022 /gene="CLDN2" /codon_start=1 /product="claudin-2" /protein_id="XP_055981777.1" /db_xref="GeneID:130034233" /translation="MASLSLQLIGYLLGLLGLLGTVVAMLLPSWRTSSYVGASIVTAVGFSKGLWMECATHSTGITQCDIYSTLLGLPADIQAAQAMMVTSSAISSLACIISVVGMRCTVFCQNSHVKDKVAVVGGVLFFLGGLLGFIPVAWNLHGILRDFYSPLVPDSMKFEIGEALYLGIISSLFSLGGGIILCFSCPSQRNRPNYYDAYQAQPLTTRSSPRPVQPSKTKNEFNSYSLTGYV" misc_feature 393..872 /gene="CLDN2" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN //...
XM_056125802.1 -
Sorex fumeus (smoky shrew) -
NCBI
similarity to: 8 Proteins" /db_xref="GeneID:130032017" CDS 277..951 /gene="CLDN19" /codon_start=1 /product="claudin-19" /protein_id="XP_055979573.1" /db_xref="GeneID:130032017" /translation="MANSGLQLLGYFLALGGWVGIIASTVLPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCKLYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVADSNPVAKGRVAISGGVLFFLAGLCTVTAVSWYATLVTQEFFNPTTPVNARYEFGPALFVGWASAGLAMLGGSFLCCSCPPPERASSIPQPYRPGPSTAAREPVVKLSASAKGPLGI" misc_feature 286..822 /gene="CLDN19" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN //...
XM_056123598.1 -
Sorex fumeus (smoky shrew) -
NCBI
L" /gene_synonym="cldn4l2; cldn6; cldn6.1" /codon_start=1 /product="claudin 6, gene 1 L homeolog" /protein_id="NP_001086756.1" /db_xref="GeneID:446591" /db_xref="Xenbase:XB-GENE-959189" /translation="MASTGLQILGMALALIGWVGCIITCAMPMWRVTAFIGNNIVVAQTIWEGLWMNCIVQITGQMQCKVYDSMLALSQDLQAARALTVICILVALLALLIGVVGAKCTNCIEDENTKAKVSMVSGVVYLVAGILMLIPVCWSANSIIRDFYNPLVVEAQKRELGAAIYIGWASSTLMLLGGGLLCCSCPKKEDNHYSARYTAAASQPRSDYPSKDYV" misc_feature 54..554 /gene="cldn6.1.L" /gene_synonym="cldn4l2; cldn6; cldn6.1" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN //...
Synonym: cldn4l2; cldn6; cldn6.1
NM_001093287.1 -
Xenopus laevis (African clawed frog) -
NCBI
similarity to: 17 Proteins" /db_xref="GeneID:130028701" CDS 1..702 /gene="CLDN14" /codon_start=1 /product="claudin-14" /protein_id="XP_055975505.1" /db_xref="GeneID:130028701" /translation="MASTAVQLLGFLLSFLGLVGTLLTTVLPHWQRKAHVGSNILTAVSYLKGLWMECVWQATGVYQCQLYRSLLALPRDLQAARALMVVSCLLSAVACVLAVVGMKCTRCAKDTPLKTSLAVAGGVLFMLAGLLCLIPVSWATHNVVRDFFNPLLHNSLKYELGPALYLGFVSASLSLVGGTLLCLSCDMQAASAGGTRGQPRAAPAYRPPAAYKDHRAPSAGSAAHSGYRLNDYV" misc_feature 70..543 /gene="CLDN14" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN //...
XM_056119530.1 -
Sorex fumeus (smoky shrew) -
NCBI
similarity to: 7 Proteins" /db_xref="GeneID:130030367" CDS 1..708 /gene="CLDN16" /codon_start=1 /product="claudin-16" /protein_id="XP_055977599.1" /db_xref="GeneID:130030367" /translation="MRDLLQYVACFFALCSTGFLVVATWTDCWMENADDSLEVSTKCRGLWWECVTNAFDGIRTCDEYDSILAEHPLKLVVTRALMITADVLAGFGFITLLLGLNCVKFLPDEPYMKIRICFVAGTTLLIAGAPGIIGSVWYAVDVYVERSSLILHNIFLGIQYKFGWSCWLGMAGSLGCFLAGGLLTCCLYFFKDVKSGRTYPYSRRKSYSTAAVSMAKSYMTRRTETAKMYAVDTRV" misc_feature 31..549 /gene="CLDN16" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN //...
XM_056121624.1 -
Sorex fumeus (smoky shrew) -
NCBI
Gm16492; Gm513" /note="claudin 21, pseudogene; claudin 25, pseudogene" /codon_start=1 /product="putative claudin-25" /protein_id="NP_001371194.1" /db_xref="GeneID:100042785" /db_xref="MGI:MGI:3642767" /translation="MACSFRGRVQLGGLLLSVLGWVCSCVTTVLPQWKTLTLDLNEMETWVSGLWEACVNQEEAGTVCKAFESFLSLPQELQVARILMVASHGLGLLGLLLSSCGLECFRFHRPGGVFKTRLCLLGGTLEASASATTLFPVSWVAYATFQDFWDDSIPEIVPRWEFGDALFLGWAAGLFLAVGGLLLIFSACLENEDGSSSWMADATAPQACAPVEEEFDGSFHLTPRPVNQVI" misc_feature 124..597 /gene="Cldn25" /gene_synonym="Cldn21; Cldn21-ps; Cldn25-ps; Gm16492; Gm513" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_...
Synonym: Cldn21; Cldn21-ps; Cldn25-ps; Gm16492; Gm513
NM_001384265.1 -
Mus musculus (house mouse) -
NCBI -
UCSC -
RefEx(expression)
to: 5 Proteins" /db_xref="GeneID:130017500" CDS 164..874 /gene="CLDN15" /codon_start=1 /product="claudin-15" /protein_id="XP_055964173.1" /db_xref="GeneID:130017500" /translation="MSMAVETLGYFLGALGLLMLGVTLPHSQWRVSTVHGNVITTSTIFENLWYSCATDSTGVYNCREFPSLLALSGYLQASRALMITAILLGFLGLLLGVPGLRCTTVGSDVLSRKAKLAATAGVLHILAGFCGMVAISWYAFNITREFFDPLYPGTKYELGPALYLGWSASLMSILGGLCLGVNCCCAPEDEVAPARTWLPYKPPTKPSASVNTRLRPAASVDDVDSSFGKYGKNAYV" misc_feature 242..694 /gene="CLDN15" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN //...
XM_056108198.1 -
Sorex fumeus (smoky shrew) -
NCBI
Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from AL672243.12. On Aug 8, 2022 this sequence version replaced XM_006528490.4. Summary: This gene encodes a member of the claudin family. Claudins are integral membrane proteins and components of tight junction strands. Tight junction strands serve as a physical barrier to prevent solutes and water from passing freely through the paracellular space between epithelial or endothelial cell sheets, and also play critical roles in...
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0.000 | 0.000 | search_start;
0.112 | 0.112 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:claudin)%7C(nt:claudin)%7C(aa:claudin))?to=0&format=json
0.231 | 0.118 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:claudin)%7C(nt:claudin)%7C(aa:claudin))?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.237 | 0.006 | cgi_end;
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Nucleic Acids Res., 40, W592-W596.
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