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2026-03-04 15:10:07, GGRNA : RefSeq release 233 (Jan, 2026)

Summary:

Results:

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Ciona intestinalis diencephalon/mesencephalon homeobox protein 1-like (LOC100178876), mRNA. (952 bp)
LOCUS NM_001032796 952 bp mRNA linear INV 30-AUG-2020 DEFINITION Ciona intestinalis diencephalon/mesencephalon homeobox protein 1-like (LOC100178876), mRNA. ACCESSION NM_001032796 XM_002119104 VERSION NM_001032796.2 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EAAA01000420.1. On or before Jan 19, 2019 this sequence version replaced XM...
Synonym: dmbx; DMBX1
NM_001032796.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis paired superclass homeobox transcription factor (pitx), mRNA. (1788 bp)
LOCUS NM_001032517 1788 bp mRNA linear INV 07-DEC-2018 DEFINITION Ciona intestinalis paired superclass homeobox transcription factor (pitx), mRNA. ACCESSION NM_001032517 XM_004227039 XM_004227040 XM_009863003 VERSION NM_001032517.2 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EAAA01003470.1. On Dec 7, 2018 this sequence version...
Synonym: Ci-Pitx; PITX1
NM_001032517.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis homeobox protein BarH-like 1 (LOC144745134), mRNA. (526 bp)
LOCUS XM_078630936 526 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox protein BarH-like 1 (LOC144745134), mRNA. ACCESSION XM_078630936 VERSION XM_078630936.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136099) annotated using gene prediction method: Gnomon. Also see:...
XM_078630936.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis homeobox protein Hox-A7-like (LOC100182939), mRNA. (737 bp)
LOCUS XM_078629127 737 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox protein Hox-A7-like (LOC100182939), mRNA. ACCESSION XM_078629127 VERSION XM_078629127.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136093) annotated using gene prediction method: Gnomon. Also see:...
XM_078629127.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis homeobox protein not2 (LOC778836), mRNA. (955 bp)
LOCUS XM_018815634 955 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox protein not2 (LOC778836), mRNA. ACCESSION XM_018815634 VERSION XM_018815634.3 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136097) annotated using gene prediction method: Gnomon. Also see: Documentation...
XM_018815634.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis barH-like 1 homeobox protein (LOC778550), mRNA. (920 bp)
LOCUS XM_078635669 920 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis barH-like 1 homeobox protein (LOC778550), mRNA. ACCESSION XM_078635669 VERSION XM_078635669.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136103) annotated using gene prediction method: Gnomon. Also see:...
XM_078635669.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis homeobox protein Hox-D3 (LOC101242509), mRNA. (1129 bp)
LOCUS XM_004225838 1129 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox protein Hox-D3 (LOC101242509), mRNA. ACCESSION XM_004225838 VERSION XM_004225838.3 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136095) annotated using gene prediction method: Gnomon. Also see:...
XM_004225838.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis homeobox protein XHOX-7.1 (LOC778699), mRNA. (1013 bp)
LOCUS XM_078632327 1013 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox protein XHOX-7.1 (LOC778699), mRNA. ACCESSION XM_078632327 VERSION XM_078632327.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136100) annotated using gene prediction method: Gnomon. Also see:...
XM_078632327.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis homeobox protein BarH-like 1b (LOC778552), transcript variant X2, mRNA. (1169 bp)
LOCUS XM_078628407 1169 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox protein BarH-like 1b (LOC778552), transcript variant X2, mRNA. ACCESSION XM_078628407 VERSION XM_078628407.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136096) annotated using gene prediction method...
XM_078628407.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis homeobox protein BarH-like 1b (LOC778552), transcript variant X1, mRNA. (1172 bp)
LOCUS XM_078628406 1172 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox protein BarH-like 1b (LOC778552), transcript variant X1, mRNA. ACCESSION XM_078628406 VERSION XM_078628406.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136096) annotated using gene prediction method...
XM_078628406.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis homeobox transcription factor Hox13 (hox13), mRNA. (1596 bp)
LOCUS XM_026834904 1596 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor Hox13 (hox13), mRNA. ACCESSION XM_026834904 VERSION XM_026834904.2 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136099) annotated using gene prediction method: Gnomon, supported by...
XM_026834904.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis homeobox transcription factor Hox1 (hox1), mRNA. (1617 bp)
LOCUS XM_078637515 1617 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor Hox1 (hox1), mRNA. ACCESSION XM_078637515 VERSION XM_078637515.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136093) annotated using gene prediction method: Gnomon. Also see:...
XM_078637515.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis homeobox transcription factor, LAG1-like 4 (LOC100169897), mRNA. (2619 bp)
LOCUS XM_078627171 2619 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor, LAG1-like 4 (LOC100169897), mRNA. ACCESSION XM_078627171 VERSION XM_078627171.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136095) annotated using gene prediction method: Gnomon...
XM_078627171.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx5 (LOC778665), mRNA. (1431 bp)
LOCUS XM_026837825 1431 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx5 (LOC778665), mRNA. ACCESSION XM_026837825 VERSION XM_026837825.2 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136103) annotated using gene prediction method: Gnomon. Also see:...
XM_026837825.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx9 (LOC778666), mRNA. (1639 bp)
LOCUS XM_002123997 1639 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx9 (LOC778666), mRNA. ACCESSION XM_002123997 VERSION XM_002123997.5 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136101) annotated using gene prediction method: Gnomon. Also see:...
XM_002123997.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis homeobox protein six1b (LOC778753), mRNA. (1802 bp)
LOCUS XM_002119507 1802 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox protein six1b (LOC778753), mRNA. ACCESSION XM_002119507 VERSION XM_002119507.5 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136102) annotated using gene prediction method: Gnomon. Also see:...
XM_002119507.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis homeobox transcription factor TTF1 (titf1), mRNA. (3049 bp)
LOCUS XM_078634197 3049 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor TTF1 (titf1), mRNA. ACCESSION XM_078634197 VERSION XM_078634197.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136102) annotated using gene prediction method: Gnomon, supported by...
XM_078634197.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis homeobox-containing protein 1 (LOC778606), transcript variant X3, mRNA. (1935 bp)
LOCUS XM_078633703 1935 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox-containing protein 1 (LOC778606), transcript variant X3, mRNA. ACCESSION XM_078633703 VERSION XM_078633703.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136093) annotated using gene prediction method...
XM_078633703.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis homeobox transcription factor Pax6 (pax6), transcript variant X1, mRNA. (1942 bp)
LOCUS XM_078633012 1942 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor Pax6 (pax6), transcript variant X1, mRNA. ACCESSION XM_078633012 VERSION XM_078633012.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136101) annotated using gene prediction method...
XM_078633012.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis homeobox transcription factor Pax1/9 (pax1/9), transcript variant X2, mRNA. (2225 bp)
LOCUS XM_009861895 2225 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor Pax1/9 (pax1/9), transcript variant X2, mRNA. ACCESSION XM_009861895 VERSION XM_009861895.4 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136103) annotated using gene prediction...
XM_009861895.4 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis homeobox transcription factor Pax1/9 (pax1/9), transcript variant X1, mRNA. (2046 bp)
LOCUS XM_018813865 2046 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor Pax1/9 (pax1/9), transcript variant X1, mRNA. ACCESSION XM_018813865 VERSION XM_018813865.3 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136103) annotated using gene prediction...
XM_018813865.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis homeobox-containing protein 1 (LOC778606), transcript variant X2, mRNA. (1968 bp)
LOCUS XM_078633696 1968 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox-containing protein 1 (LOC778606), transcript variant X2, mRNA. ACCESSION XM_078633696 VERSION XM_078633696.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136093) annotated using gene prediction method...
XM_078633696.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis homeobox-containing protein 1 (LOC778606), transcript variant X1, mRNA. (1971 bp)
LOCUS XM_078633690 1971 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox-containing protein 1 (LOC778606), transcript variant X1, mRNA. ACCESSION XM_078633690 VERSION XM_078633690.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136093) annotated using gene prediction method...
XM_078633690.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx3a type 1 (lhx3), transcript variant X2, mRNA. (2706 bp)
LOCUS XM_009861448 2706 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx3a type 1 (lhx3), transcript variant X2, mRNA. ACCESSION XM_009861448 VERSION XM_009861448.3 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136105) annotated using gene prediction method:...
XM_009861448.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis homeobox transcription factor Pax6 (pax6), transcript variant X2, mRNA. (1939 bp)
LOCUS XM_026835747 1939 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor Pax6 (pax6), transcript variant X2, mRNA. ACCESSION XM_026835747 VERSION XM_026835747.2 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136101) annotated using gene prediction method...
XM_026835747.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx3a type 1 (lhx3), transcript variant X1, mRNA. (2585 bp)
LOCUS XM_078637537 2585 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx3a type 1 (lhx3), transcript variant X1, mRNA. ACCESSION XM_078637537 VERSION XM_078637537.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136105) annotated using gene prediction method:...
XM_078637537.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis paired superclass homeobox transcription factor (pitx), transcript variant X1, mRNA. (1884 bp)
LOCUS XM_009863002 1884 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis paired superclass homeobox transcription factor (pitx), transcript variant X1, mRNA. ACCESSION XM_009863002 VERSION XM_009863002.4 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136098) annotated using gene...
XM_009863002.4 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis paired superclass homeobox transcription factor (pitx), transcript variant X2, mRNA. (2314 bp)
LOCUS XM_018815448 2314 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis paired superclass homeobox transcription factor (pitx), transcript variant X2, mRNA. ACCESSION XM_018815448 VERSION XM_018815448.3 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136098) annotated using gene...
XM_018815448.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis homeobox transcription factor, LAG1-like 4 (LOC100169897), mRNA. (1256 bp)
LOCUS NM_001128878 1256 bp mRNA linear INV 22-JAN-2026 DEFINITION Ciona intestinalis homeobox transcription factor, LAG1-like 4 (LOC100169897), mRNA. ACCESSION NM_001128878 VERSION NM_001128878.1 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB210524.1. ##Evidence-Data-START## Transcript exon combination :: AB210524.1 [ECO:0000332] ##...
NM_001128878.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis diencephalon/mesencephalon homeobox protein 1-like (LOC100178876), mRNA. (975 bp)
LOCUS XM_078629054 975 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis diencephalon/mesencephalon homeobox protein 1-like (LOC100178876), mRNA. ACCESSION XM_078629054 VERSION XM_078629054.1 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136093) annotated using gene prediction method...
XM_078629054.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis homeobox transcription factor Hox13 (hox13), mRNA. (1315 bp)
LOCUS NM_001128872 1315 bp mRNA linear INV 26-JAN-2026 DEFINITION Ciona intestinalis homeobox transcription factor Hox13 (hox13), mRNA. ACCESSION NM_001128872 VERSION NM_001128872.1 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB210493.1. ##Evidence-Data-START## Transcript exon combination :: AB210493.1, BW342903.1 [ECO:0000332] ##...
Synonym: Ci-Hox13; hox12/13
NM_001128872.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis homeobox transcription factor TTF1 (titf1), mRNA. (2297 bp)
LOCUS NM_001032495 2297 bp mRNA linear INV 26-JAN-2026 DEFINITION Ciona intestinalis homeobox transcription factor TTF1 (titf1), mRNA. ACCESSION NM_001032495 VERSION NM_001032495.1 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AJ009607.1. ##Evidence-Data-START## Transcript exon combination :: AJ009607.1, AB210735.1 [ECO:0000332] ##...
Synonym: Ci-TTF1; TTF1
NM_001032495.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis homeobox transcription factor hox2 (hox2), mRNA. (2039 bp)
LOCUS XM_026833760 2039 bp mRNA linear INV 21-JAN-2026 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor hox2 (hox2), mRNA. ACCESSION XM_026833760 VERSION XM_026833760.2 DBLINK BioProject: PRJNA1397229 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_136093) annotated using gene prediction method: Gnomon, supported by...
XM_026833760.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis homeobox transcription factor Pax1/9 (pax1/9), mRNA. (1698 bp)
LOCUS NM_001032422 1698 bp mRNA linear INV 26-JAN-2026 DEFINITION Ciona intestinalis homeobox transcription factor Pax1/9 (pax1/9), mRNA. ACCESSION NM_001032422 VERSION NM_001032422.1 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB020762.1. ##Evidence-Data-START## Transcript exon combination :: AB020762.1, AB210627.1 [ECO:0000332] ##...
Synonym: Ci-Pax1/9
NM_001032422.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis LIM/homeobox protein Lhx3a type 1 (lhx3), mRNA. (2637 bp)
LOCUS NM_001078287 2637 bp mRNA linear INV 26-JAN-2026 DEFINITION Ciona intestinalis LIM/homeobox protein Lhx3a type 1 (lhx3), mRNA. ACCESSION NM_001078287 VERSION NM_001078287.1 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB210532.1. ##Evidence-Data-START## Transcript exon combination :: AB210532.1 [ECO:0000332] ##Evidence-Data-END...
Synonym: Ci-Lhx3a; Lhx4
NM_001078287.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis homeobox transcription factor Hox1 (hox1), mRNA. (1506 bp)
LOCUS NM_001128861 1506 bp mRNA linear INV 26-JAN-2026 DEFINITION Ciona intestinalis homeobox transcription factor Hox1 (hox1), mRNA. ACCESSION NM_001128861 VERSION NM_001128861.1 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB210490.1. ##Evidence-Data-START## Transcript exon combination :: AB210490.1, AK116194.1 [ECO:0000332] ##...
Synonym: Ci-Hox1
NM_001128861.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis homeobox transcription factor Pax6 (pax6), mRNA. (1930 bp)
LOCUS NM_001032469 1930 bp mRNA linear INV 26-JAN-2026 DEFINITION Ciona intestinalis homeobox transcription factor Pax6 (pax6), mRNA. ACCESSION NM_001032469 VERSION NM_001032469.1 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB079883.1. ##Evidence-Data-START## Transcript exon combination :: AB079883.1 [ECO:0000332] ##Evidence-Data-END...
Synonym: Ci-Pax6
NM_001032469.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis transcription factor protein (prep), mRNA. (2290 bp)
misc_feature 293..550 /gene="prep" /note="N-terminal of Homeobox Meis and PKNOX1; Region: Meis_PKNOX_N; pfam16493" /db_xref="CDD:465140" misc_feature order(869..883,887..889,947..949,965..967,1004..1006, 1010..1015,1022..1027,1031..1039) /gene="prep" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(875..877,884..886,1013..1015,1022..1027,1034..1036) /gene="prep" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 923..1039 /gene="prep" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="...
NM_001078335.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis transcription factor protein (meis), mRNA. (2618 bp)
misc_feature 537..797 /gene="meis" /note="N-terminal of Homeobox Meis and PKNOX1; Region: Meis_PKNOX_N; pfam16493" /db_xref="CDD:465140" misc_feature order(1119..1130,1134..1136,1194..1196,1212..1214, 1251..1253,1257..1262,1269..1274,1278..1286) /gene="meis" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(1122..1124,1131..1133,1260..1262,1269..1274, 1281..1283) /gene="meis" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1170..1286 /gene="meis" /note="Homeobox KN domain; Region: Homeobox_KN;...
NM_001078475.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis transcription factor protein (irx-c), mRNA. (2662 bp)
NM_001078280.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis transcription factor protein (irx-b), mRNA. (2230 bp)
gene="irx-b" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(464..466,473..475,602..604,611..616,623..625) /gene="irx-b" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 512..628 /gene="irx-b" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 329..432 /gene="irx-b" /inference="alignment:Splign:2.1.0" exon 433..595 /gene="irx-b" /inference="alignment:Splign:2.1.0" exon 596..902 /gene="irx-b" /inference="alignment:Splign:2.1.0" exon 903..1833 /gene="irx-b" /inference="...
NM_001078279.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis transcription factor protein (irx-a), mRNA. (2127 bp)
gene="irx-a" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(490..492,499..501,628..630,637..642,649..651) /gene="irx-a" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 538..654 /gene="irx-a" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 133..360 /gene="irx-a" /inference="alignment:Splign:2.1.0" exon 361..458 /gene="irx-a" /inference="alignment:Splign:2.1.0" exon 459..621 /gene="irx-a" /inference="alignment:Splign:2.1.0" exon 622..757 /gene="irx-a" /inference="...
NM_001078278.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis distal-less (dll-b), mRNA. (1151 bp)
TITLE A cDNA resource from the basal chordate Ciona intestinalis JOURNAL Genesis 33 (4), 153-154 (2002) PUBMED 12203911 REFERENCE 7 (bases 1 to 1151) AUTHORS Caracciolo A, Di Gregorio A, Aniello F, Di Lauro R and Branno M. TITLE Identification and developmental expression of three Distal-less homeobox containing genes in the ascidian Ciona intestinalis JOURNAL Mech. Dev. 99 (1-2), 173-176 (2000) PUBMED 11091088 REFERENCE 8 (bases 1 to 1151) AUTHORS Di Gregorio A, Spagnuolo A, Ristoratore F, Pischetola M, Aniello F, Branno M, Cariello L and Di Lauro R. TITLE Cloning of ascidian homeobox genes...
Synonym: Ci-Dll-B; DLX3
NM_001032500.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis Prx1 protein (prx1), mRNA. (2665 bp)
map="12" gene 1..2665 /gene="prx1" /gene_synonym="Ci-Rx; Rax" /note="Prx1 protein" /db_xref="GeneID:445693" exon 1..1575 /gene="prx1" /gene_synonym="Ci-Rx; Rax" /inference="alignment:Splign:2.1.0" CDS 30..2510 /gene="prx1" /gene_synonym="Ci-Rx; Rax" /function="transcription factor" /note="homeobox transcription factor, Rx" /codon_start=1 /product="Prx1 protein" /protein_id="NP_001027683.1" /db_xref="GeneID:445693" /translation="...
Synonym: Ci-Rx; Rax
NM_001032511.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis En protein (en), mRNA. (1255 bp)
misc_feature 808..978 /gene="en" /gene_synonym="Ci-En" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" misc_feature 982..1059 /gene="en" /gene_synonym="Ci-En" /note="Engrailed homeobox C-terminal signature domain; Region: Engrail_1_C_sig; pfam10525" /db_xref="CDD:431338" ORIGIN // REFERENCE 1 (bases 1 to 1255) AUTHORS Satou Y, Kawashima T, Shoguchi E, Nakayama A and Satoh N. TITLE An integrated database of the ascidian, Ciona intestinalis: towards functional genomics JOURNAL Zool. Sci. 22 (8), 837-843 (2005) PUBMED 16141696 REFERENCE 2 (bases 1 to 1255) AUTHORS Imai KS, Satoh N...
Synonym: Ci-En
NM_001032479.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis distal-less A (dll-a), mRNA. (1588 bp)
developmentally relevant genes in Ciona intestinalis JOURNAL Dev. Genes Evol. 213 (5-6), 211-212 (2003) PUBMED 12736827 REFERENCE 4 (bases 1 to 1588) AUTHORS Caracciolo A, Di Gregorio A, Aniello F, Di Lauro R and Branno M. TITLE Identification and developmental expression of three Distal-less homeobox containing genes in the ascidian Ciona intestinalis JOURNAL Mech. Dev. 99 (1-2), 173-176 (2000) PUBMED 11091088...
Synonym: Ci-Dll-A; Dll
NM_001032648.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis transcription factor protein (pou-like), mRNA. (2230 bp)
misc_feature 296..508 /gene="pou-like" /note="Pou domain - N-terminal to homeobox domain; Region: Pou; pfam00157" /db_xref="CDD:459692" misc_feature <488..1111 /gene="pou-like" /note="MAEBL; Provisional; Region: PTZ00121" /db_xref="CDD:173412" misc_feature <1769..1891 /gene="pou-like" /note="Homeodomain; Region: HOX; smart00389" /db_xref="CDD:197696" exon 279..429 /gene="pou-like" /inference="alignment:Splign:2.1.0" exon 430..523 /gene="pou-like" /inference="alignment:Splign:2.1.0" exon 524..645 /gene="pou-like" /inference="alignment:Splign:2.1.0" exon 646..738 /gene="pou-like" /inference="...
NM_001078492.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis Distal-less (dll-c), mRNA. (1760 bp)
TITLE A cDNA resource from the basal chordate Ciona intestinalis JOURNAL Genesis 33 (4), 153-154 (2002) PUBMED 12203911 REFERENCE 5 (bases 1 to 1760) AUTHORS Caracciolo A, Di Gregorio A, Aniello F, Di Lauro R and Branno M. TITLE Identification and developmental expression of three Distal-less homeobox containing genes in the ascidian Ciona intestinalis JOURNAL Mech. Dev. 99 (1-2), 173-176 (2000) PUBMED 11091088...
NM_001032649.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis LIM homeodomain protein (isl), mRNA. (1939 bp)
gene 1..1939 /gene="isl" /gene_synonym="Ci-isl" /note="LIM homeodomain protein" /db_xref="GeneID:445793" misc_feature 268..270 /gene="isl" /gene_synonym="Ci-isl" /note="upstream in-frame stop codon" CDS 331..1476 /gene="isl" /gene_synonym="Ci-isl" /function="transcription factor" /note="homeobox transcription factor isl" /codon_start=1 /product="LIM homeodomain protein" /protein_id="NP_001027767.1" /db_xref="GeneID:445793" /translation="...
Synonym: Ci-isl
NM_001032595.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

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Redirect URI : https://ggrna.dbcls.jp/en/ci/homeobox
lang : en | div : | spe : ci | query_string : homeobox | format : html | download : 

0.000 | 0.000 | search_start;
0.081 | 0.081 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:homeobox)%7C(nt:homeobox)%7C(aa:homeobox))?source=Ciona intestinalis (vase tunicate)?to=0&format=json
0.151 | 0.071 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:homeobox)%7C(nt:homeobox)%7C(aa:homeobox))?source=Ciona intestinalis (vase tunicate)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.156 | 0.005 | cgi_end;

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]