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Previous release (v1)
2024-11-22 23:51:11, GGRNA : RefSeq release 226 (Sep, 2024)
Summary:
Results:
Matches are highlighted with green background.
Overlapping matches are dark colored.
LOCUS NM_001032796 952 bp mRNA linear INV 30-AUG-2020 DEFINITION Ciona intestinalis diencephalon/mesencephalon homeobox protein 1-like (LOC100178876), mRNA. ACCESSION NM_001032796 XM_002119104 VERSION NM_001032796.2 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EAAA01000420.1. On or before Jan 19, 2019 this sequence version replaced XM...
Synonym: dmbx; DMBX1
NM_001032796.2 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS NM_001128872 1315 bp mRNA linear INV 16-AUG-2020 DEFINITION Ciona intestinalis homeobox transcription factor Hox13 (hox13), mRNA. ACCESSION NM_001128872 VERSION NM_001128872.1 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB210493.1. ##Evidence-Data-START## Transcript exon combination :: AB210493.1, BW342903.1 [ECO:0000332]...
Synonym: Ci-Hox13; hox12/13
NM_001128872.1 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_026834904 1555 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor Hox13 (hox13), transcript variant X1, mRNA. ACCESSION XM_026834904 VERSION XM_026834904.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020172.2) annotated using gene prediction...
Synonym: Ci-Hox13; hox12/13
XM_026834904.1 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_026835307 1682 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein BarH-like 1 (LOC100180227), mRNA. ACCESSION XM_026835307 VERSION XM_026835307.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020172.2) annotated using gene prediction method: Gnomon. Also see:...
XM_026835307.1 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_018815614 1647 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor Hox1 (hox1), transcript variant X1, mRNA. ACCESSION XM_018815614 VERSION XM_018815614.2 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004190417.1) annotated using gene prediction...
Synonym: Ci-Hox1
XM_018815614.2 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_026840279 1040 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein Hox-A7-like (LOC100182939), mRNA. ACCESSION XM_026840279 VERSION XM_026840279.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq; includes ab initio. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004191498.1) annotated using gene prediction...
XM_026840279.1 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS NM_001128878 1256 bp mRNA linear INV 04-MAY-2019 DEFINITION Ciona intestinalis homeobox transcription factor, LAG1-like 4 (LOC100169897), mRNA. ACCESSION NM_001128878 VERSION NM_001128878.1 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB210524.1. ##Evidence-Data-START## Transcript exon combination :: AB210524.1 [ECO:0000332] ##...
NM_001128878.1 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_009863539 619 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein ceh-22-like (LOC104266693), partial mRNA. ACCESSION XM_009863539 VERSION XM_009863539.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq; includes ab initio. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004190492.2) annotated using gene...
XM_009863539.1 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_026833867 1047 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein Hox-D3-like (LOC101242509), transcript variant X3, mRNA. ACCESSION XM_026833867 VERSION XM_026833867.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020168.2) annotated using gene prediction...
XM_026833867.1 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_018815634 1752 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein not2 (LOC778836), mRNA. ACCESSION XM_018815634 VERSION XM_018815634.2 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004190418.1) annotated using gene prediction method: Gnomon, supported by mRNA...
XM_018815634.2 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_002119663 1195 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein OTX1 (LOC778736), mRNA. ACCESSION XM_002119663 VERSION XM_002119663.3 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020176.2) annotated using gene prediction method: Gnomon, supported by mRNA and...
XM_002119663.3 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_002121178 1158 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein MSH-B (LOC778698), mRNA. ACCESSION XM_002121178 VERSION XM_002121178.4 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020177.2) annotated using gene prediction method: Gnomon, supported by mRNA...
XM_002121178.4 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_004226288 1827 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein MSX-3 (LOC778699), mRNA. ACCESSION XM_004226288 VERSION XM_004226288.4 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020173.2) annotated using gene prediction method: Gnomon, supported by mRNA...
XM_004226288.4 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_004225838 1174 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein Hox-D3-like (LOC101242509), transcript variant X1, mRNA. ACCESSION XM_004225838 VERSION XM_004225838.2 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020168.2) annotated using gene prediction...
XM_004225838.2 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_026838897 1179 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein BarH-like 1b (LOC778552), transcript variant X1, mRNA. ACCESSION XM_026838897 VERSION XM_026838897.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004190446.2) annotated using gene prediction...
XM_026838897.1 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_002131160 1570 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein 9 (LOC100175057), transcript variant X2, mRNA. ACCESSION XM_002131160 VERSION XM_002131160.4 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020166.2) annotated using gene prediction method: Gnomon...
XM_002131160.4 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_018816006 1176 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein BarH-like 1b (LOC778552), transcript variant X2, mRNA. ACCESSION XM_018816006 VERSION XM_018816006.2 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004190446.2) annotated using gene prediction...
XM_018816006.2 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_002123146 2794 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein Hox-C12a (LOC778572), mRNA. ACCESSION XM_002123146 VERSION XM_002123146.4 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020168.2) annotated using gene prediction method: Gnomon, supported by mRNA...
XM_002123146.4 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_004226074 2262 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein engrailed-2a-like (LOC101242288), mRNA. ACCESSION XM_004226074 VERSION XM_004226074.3 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020170.2) annotated using gene prediction method: Gnomon. Also...
XM_004226074.3 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_002123477 1640 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein Hox-D9a (LOC778556), mRNA. ACCESSION XM_002123477 VERSION XM_002123477.2 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020173.2) annotated using gene prediction method: Gnomon, supported by mRNA...
XM_002123477.2 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_002127463 2091 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein DTH-2 (LOC778697), mRNA. ACCESSION XM_002127463 VERSION XM_002127463.3 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020170.2) annotated using gene prediction method: Gnomon, supported by mRNA...
XM_002127463.3 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_0188 1908 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein 10 (LOC778737), mRNA. ACCESSION XM_0188 VERSION XM_0188.2 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020166.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see:...
XM_018811111.2 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_009860412 1392 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein Hox-A2 (LOC778789), mRNA. ACCESSION XM_009860412 VERSION XM_009860412.3 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq; includes ab initio. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020170.2) annotated using gene prediction method: Gnomon...
XM_009860412.3 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_009861895 1754 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor Pax1/9 (pax1/9), transcript variant X2, mRNA. ACCESSION XM_009861895 VERSION XM_009861895.3 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020176.2) annotated using gene prediction...
Synonym: Ci-Pax1/9
XM_009861895.3 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_018813865 1779 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor Pax1/9 (pax1/9), transcript variant X1, mRNA. ACCESSION XM_018813865 VERSION XM_018813865.2 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020176.2) annotated using gene prediction...
Synonym: Ci-Pax1/9
XM_018813865.2 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_026835747 1953 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor Pax6 (pax6), transcript variant X1, mRNA. ACCESSION XM_026835747 VERSION XM_026835747.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020174.2) annotated using gene prediction method...
Synonym: Ci-Pax6
XM_026835747.1 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_018815448 1891 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis paired superclass homeobox transcription factor (pitx), transcript variant X2, mRNA. ACCESSION XM_018815448 VERSION XM_018815448.2 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004190397.2) annotated using gene...
XM_018815448.2 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_009863002 1882 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis paired superclass homeobox transcription factor (pitx), transcript variant X1, mRNA. ACCESSION XM_009863002 VERSION XM_009863002.3 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004190397.2) annotated using gene...
XM_009863002.3 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS NM_001032495 2297 bp mRNA linear INV 04-MAY-2019 DEFINITION Ciona intestinalis homeobox transcription factor TTF1 (titf1), mRNA. ACCESSION NM_001032495 VERSION NM_001032495.1 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AJ009607.1. ##Evidence-Data-START## Transcript exon combination :: AJ009607.1, AB210735.1 [ECO:0000332] RNAseq...
Synonym: Ci-TTF1; TTF1
NM_001032495.1 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_026833866 1168 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein Hox-D3-like (LOC101242509), transcript variant X2, mRNA. ACCESSION XM_026833866 VERSION XM_026833866.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020168.2) annotated using gene prediction...
XM_026833866.1 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_026837825 1484 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx5 (LOC778665), mRNA. ACCESSION XM_026837825 VERSION XM_026837825.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004190346.2) annotated using gene prediction method: Gnomon, supported by...
XM_026837825.1 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_018815079 1572 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein 9 (LOC100175057), transcript variant X1, mRNA. ACCESSION XM_018815079 VERSION XM_018815079.2 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020166.2) annotated using gene prediction method: Gnomon...
XM_018815079.2 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_002123997 1577 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx9 (LOC778666), mRNA. ACCESSION XM_002123997 VERSION XM_002123997.4 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020174.2) annotated using gene prediction method: Gnomon, supported by mRNA...
XM_002123997.4 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_002119507 1491 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein SIX6 (LOC778753), mRNA. ACCESSION XM_002119507 VERSION XM_002119507.4 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020175.2) annotated using gene prediction method: Gnomon, supported by mRNA and...
XM_002119507.4 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_018811998 3015 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox-containing protein 1 (LOC778606), transcript variant X3, mRNA. ACCESSION XM_018811998 VERSION XM_018811998.2 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020166.2) annotated using gene prediction method...
XM_018811998.2 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_009861448 2366 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx3a type 1 (lhx3), transcript variant X3, mRNA. ACCESSION XM_009861448 VERSION XM_009861448.2 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004191144.1) annotated using gene prediction...
Synonym: Ci-Lhx3a; Lhx4
XM_009861448.2 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_002121035 3019 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox-containing protein 1 (LOC778606), transcript variant X2, mRNA. ACCESSION XM_002121035 VERSION XM_002121035.2 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020166.2) annotated using gene prediction method...
XM_002121035.2 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_018811990 3051 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox-containing protein 1 (LOC778606), transcript variant X1, mRNA. ACCESSION XM_018811990 VERSION XM_018811990.2 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020166.2) annotated using gene prediction method...
XM_018811990.2 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_026839731 2708 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx3a type 1 (lhx3), transcript variant X1, mRNA. ACCESSION XM_026839731 VERSION XM_026839731.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004191144.1) annotated using gene prediction...
Synonym: Ci-Lhx3a; Lhx4
XM_026839731.1 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_026839732 3581 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx3a type 1 (lhx3), transcript variant X2, mRNA. ACCESSION XM_026839732 VERSION XM_026839732.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004191144.1) annotated using gene prediction...
Synonym: Ci-Lhx3a; Lhx4
XM_026839732.1 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS NM_001032517 1788 bp mRNA linear INV 07-DEC-2018 DEFINITION Ciona intestinalis paired superclass homeobox transcription factor (pitx), mRNA. ACCESSION NM_001032517 XM_004227039 XM_004227040 XM_009863003 VERSION NM_001032517.2 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EAAA01003470.1. On Dec 7, 2018 this sequence version...
Synonym: Ci-Pitx; PITX1
NM_001032517.2 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_026833761 2358 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor hox2 (hox2), transcript variant X2, mRNA. ACCESSION XM_026833761 VERSION XM_026833761.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020166.2) annotated using gene prediction method...
XM_026833761.1 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_026833760 2440 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor hox2 (hox2), transcript variant X1, mRNA. ACCESSION XM_026833760 VERSION XM_026833760.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020166.2) annotated using gene prediction method...
XM_026833760.1 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_009861931 1488 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein unc-4 homolog (LOC778790), partial mRNA. ACCESSION XM_009861931 VERSION XM_009861931.3 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq; corrected model. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020176.2) and transcript sequence...
XM_009861931.3 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS NM_001032422 1698 bp mRNA linear INV 04-MAY-2019 DEFINITION Ciona intestinalis homeobox transcription factor Pax1/9 (pax1/9), mRNA. ACCESSION NM_001032422 VERSION NM_001032422.1 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB020762.1. ##Evidence-Data-START## Transcript exon combination :: AB020762.1, AB210627.1 [ECO:0000332]...
Synonym: Ci-Pax1/9
NM_001032422.1 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS NM_001128861 1506 bp mRNA linear INV 29-OCT-2018 DEFINITION Ciona intestinalis homeobox transcription factor Hox1 (hox1), mRNA. ACCESSION NM_001128861 VERSION NM_001128861.1 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB210490.1. ##Evidence-Data-START## Transcript exon combination :: AB210490.1, AK116194.1 [ECO:0000332] RNAseq...
Synonym: Ci-Hox1
NM_001128861.1 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS NM_001078287 2637 bp mRNA linear INV 04-MAY-2019 DEFINITION Ciona intestinalis LIM/homeobox protein Lhx3a type 1 (lhx3), mRNA. ACCESSION NM_001078287 VERSION NM_001078287.1 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB210532.1. ##Evidence-Data-START## Transcript exon combination :: AB210532.1 [ECO:0000332] RNAseq introns ::...
Synonym: Ci-Lhx3a; Lhx4
NM_001078287.1 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS NM_001032469 1930 bp mRNA linear INV 04-MAY-2019 DEFINITION Ciona intestinalis homeobox transcription factor Pax6 (pax6), mRNA. ACCESSION NM_001032469 VERSION NM_001032469.1 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB079883.1. ##Evidence-Data-START## Transcript exon combination :: AB079883.1 [ECO:0000332] RNAseq introns ::...
Synonym: Ci-Pax6
NM_001032469.1 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
misc_feature 530..790 /gene="meis" /note="N-terminal of Homeobox Meis and PKNOX1; Region: Meis_PKNOX_N; pfam16493" /db_xref="CDD:465140" misc_feature order(1112..1123,1127..1129,1187..1189,1205..1207, 1244..1246,1250..1255,1262..1267,1271..1279) /gene="meis" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(1115..1117,1124..1126,1253..1255,1262..1267, 1274..1276) /gene="meis" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1163..1279 /gene="meis" /note="Homeobox KN domain; Region: Homeobox_KN;...
XM_018813577.2 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
misc_feature 518..778 /gene="meis" /note="N-terminal of Homeobox Meis and PKNOX1; Region: Meis_PKNOX_N; pfam16493" /db_xref="CDD:465140" misc_feature order(1100..1111,1115..1117,1175..1177,1193..1195, 1232..1234,1238..1243,1250..1255,1259..1267) /gene="meis" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(1103..1105,1112..1114,1241..1243,1250..1255, 1262..1264) /gene="meis" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1151..1267 /gene="meis" /note="Homeobox KN domain; Region: Homeobox_KN;...
XM_018813576.2 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
Data Export:
Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.
Debug Info:
Redirect URI : http://ggrna.dbcls.jp/en/ci/homeobox
lang : en |
div : |
spe : ci |
query_string : homeobox |
format : html |
download :
0.000 | 0.000 | search_start;
0.159 | 0.159 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:homeobox)%7C(nt:homeobox)%7C(aa:homeobox))?source=Ciona intestinalis (vase tunicate)?to=0&format=json
0.313 | 0.154 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:homeobox)%7C(nt:homeobox)%7C(aa:homeobox))?source=Ciona intestinalis (vase tunicate)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.318 | 0.005 | cgi_end;
GGRNA ver.2 by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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