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Previous release (v1)
2024-12-03 01:34:09, GGRNA : RefSeq release 226 (Sep, 2024)
Summary:
Results:
Matches are highlighted with green background.
Overlapping matches are dark colored.
gatcaaattccctagcttctgggagtaaactcttccccaacttgatctcttgaatttctttcctcaacttcatctcccaaaatgttttccgatcctcactcaaatctgggtgcataagttcgaaattcgatttcttcatagcctcgttttgcttctccagttccgaaatctgattcgccagcccaatctcttcttgcgatgtctccatttgcttttcagatataaatctcttagtcgtagagacaagacagatagcttactcgcttcactacactaatggcctatgtcagcgttggtcctgctgctcaggttagggttgtagtgtagtgcagtgaagtgagtaagctatctgtcttgtctctacgactaggagatttatatctgaaaaacaaatggagatatcgcaagaagagattgggctggcaaatcagatttcagaactggagaagcaaaacgaggctatgaagaaatcgaatttcgaatttatgcgtccagatttgagtgaggattagaaaacattttgggagatgaagttgaggaaggaaattcaagagatgaagttggggaagagtttactcccagaagctagggaatttgatc...
position 920 1141
XR_003638702.1 -
Camellia sinensis -
NCBI
alignments, including 14 samples with support for all annotated introns" /db_xref="GeneID:122670138" ncRNA 1..148 /ncRNA_class="lncRNA" /gene="LOC122670138" /product="uncharacterized LOC122670138" /db_xref="GeneID:122670138" ORIGIN // tttctacaagagatggtgtgcgaaacagtttttaatggaaaggaagaacttagtcaatctcttcttgaaagcaagcgaggaagacaagctgaaggtattggaattgtatatgccagatactgaggacatcaatgaagactgatgaatg
position 55
XR_006334132.1 -
Telopea speciosissima -
NCBI
agtgatttcaagctcatggctccgaagagtttcctgctagcttgtttacttgcttttactctacaattcttcttctcgcctccagtatcatcttcagcttctcttctttccacctccaaggaaagctcctctatgaaggatttgattaaacttggagaaggatgtgtgagccacccagaggatgtttctgttgtggttagaaagggtgcgctgtatacagctactaatgatggttgggtcaagtatttcatcctccataatgaaaccttggttaattggaagcacatagacagtcaatctcttcttggactcacagcaacaaaggaaggtgacgtcattatatgcgacagtaaaaaaggtttgtttaaggttaccgaagaaggcgtaaaggttcttgatccagatgtaagatttgcaaatgatgtgatcgatgcatcagatggcacgttgtattttactgtctcaagcaccaaatatacccccgcagatttctacaaagacatggctgagggaaatccttacggccagttgctcaaatatgatcctaaatcgaaccaaacaacagttttgcaagagggattttactttgctaatggcatt...
position 323
XM_006485118.4 -
Citrus sinensis (sweet orange) -
NCBI
agtgatttcaagctcatggctccgaagagtttcctgctagcttgtttacttgcttttactctacaattcttcttctcgcctccagtatcatcttcagcttctcttctttccacctccaaggaaagctcctctatgaaggatttgattaaacttggagaaggatgtgtgagccacccagaggatgtttctgttgtggttagaaagggtgcgctgtatacagctactaatgatggttgggtcaagtatttcatcctccataatgaaaccttggttaattggaagcacatagacagtcaatctcttcttggactcacagcaacaaaggaaggtgacgtcattatatgcgacagtaaaaaaggtttgtttaaggttaccgaagaaggcgtaaaggttcttgatccagatgtaagatttgcaaatgatgtgatcgatgcatcagatggcacgttgtattttactgtctcaagcaccaaatatacccccgcagatttctacaaagacatggctgagggaaatccttacggccagttgctcaaatatgatcctaaatcgaaccaaacaacagttttgcaagagggattttactttgctaatggcatt...
position 298
XM_006445687.2 -
Citrus x clementina -
NCBI
GeneID:107512815" ncRNA 1..319 /ncRNA_class="lncRNA" /gene="LOC107512815" /product="uncharacterized LOC107512815, transcript variant X2" /db_xref="GeneID:107512815" ORIGIN // cgtcagccggcgctgaactgtgacggcagcgctcacggacccgcggctcgtgacggcattattgggggcgaccatcgacctggatattttttctgcatatgaaaccccgactgacaatctcttcttgcgacgctcgacggtgaagcgccctgttcttccagcagccacggcctctcatgagaagctgctgtcatttaagtgacaacctgcttacagcaaaacgacgccagacgccgttggtttgtgaacggccctcaccacgcggtggacgacgccccgcagaccggcgcccaaaccctgggagcctgcgaagacctcg
position 115
XR_001597394.2 -
Rousettus aegyptiacus (Egyptian rousette) -
NCBI
gene="LOC116657067" /product="uncharacterized LOC116657067" /db_xref="GeneID:116657067" ORIGIN // accacatcacaaacaaaagtcctaataaaagtcgctgactaggactatcctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacacatgaaagagatgtatttgctcagggtctatcaatcttgttctgcctgttttctcaagtcagcagccttatctttacatttactccactcaatctcttcttgtcattttccctttctgtctgaaaataactacccccaagtctgcaaagcatcatctttgtattccatttcttgttgtaaagagtttgtgacattctgcgagatggacatgctagatcggaagagca
position 193
XR_004311999.1 -
Camelus ferus (Wild Bactrian camel) -
NCBI
tccacggaaaatgaaattaccaatacgagtaatcaaacagcaaacatagtaattgatccaggaagtattgattcagaagaaataaacaaattagccgcaaaattagttgaagaatcaattctcaaagcatcacaggaagcagcatcagataaccacgagaaagaaagatcaagtgcaacatcaaaagctgattatgaaagatcatttgatcaagacgtcacttatgaaagatcttcaccgttgcttgaaccaagtgaagaaccagtgatggaatccaaagaaccagaactgacacaagaagagattgatcacattgcaaggatccagagtcttgcagaacaatcatcattcgaacaagcttcaacgattcctgatcgaccacctcttccagcccggcttccgactgtagacgagccgattgtcatctcagaacaacacgaagaagacagatcaagtgcaacatcgggagctgactatgaaagatccttcgatcaagaagtcacgtatgaaagatcttcaccgttgcttgaaccatgtgaagaaccagtgatggaatccaaagaaccagaactgacacaagaagagattgatcatattgca...
position 1741
product="uncharacterized LOC122662367" /db_xref="GeneID:122662367" ORIGIN // acagaacaaactcactcttactgaaaatcaagtttcgggggtgaatgtcttctcgcaaggtttctctggaaatcattttaaggggaaatcttctttccagaaacctgcttatagtttcctagagtccgtgctgccggggaaatcatcttcagcaaaaaccagttatttgcagggaagagagtggaaatgatatacgtggacatcttcaatctcttcttgtactaaatgtttctcaacaagagagacatgtgctgtaagcctgtaactgcgaagaattagatctcgaagggatctatttcgtttt
position 207
XR_006333008.1 -
Telopea speciosissima -
NCBI
tccacggaaaatgaaattaccaatacgagtaatcaaacagcaaacatagtaattgatccaggaagtattgattcagaagaaataaacaaattagccgcaaaattagttgaagaatcaattctcaaagcatcacaggaagcagcatcagataaccacgagaaagaaagatcaagtgcaacatcaaaagctgattatgaaagatcatttgatcaagacgtcacttatgaaagatcttcaccgttgcttgaaccaagtgaagaaccagtgatggaatccaaagaaccagaactgacacaagaagagattgatcacattgcaaggatccagagtcttgcagaacaatcatcattcgaacaagcttcaacgattcctgatcgaccacctcttccagcccggcttccgactgtagacgagccgattgtcatctcagaacaacacgaagaagacagatcaagtgcaacatcgggagctgactatgaaagatccttcgatcaagaagtcacgtatgaaagatcttcaccgttgcttgaaccatgtgaagaaccagtgatggaatccaaagaaccagaactgacacaagaagagattgatcatattgca...
position 1741
experiment="COORDINATES: polyA evidence [ECO:0006239]" /db_xref="GeneID:128424167" ORIGIN // ggtggggagagaaggagactctcctgagggcaacagtgagagaagggaacttgccagtggcccatctagtcctggatcctgttctcacagtggccaacaggcatcaatttacacttatttacattgtttatgttgaattgcacttgccattttattacccattcactcaggttggagagcttgttttcacaatctcttcttgtttgaatgaccctgaacaatttagcatcatcggcaaacttcactgctcacccctaattctcaattgtttttgaacaagttaaatagcagaggtctcagtgttgatctttttaaaataaaaaataaaataaggtgttgttaaagttttttcataatacaataagataaaagaaactaaataaaaacaaaaaca
position 190
XR_008332942.1 -
Podarcis raffonei (Aeolian wall lizard) -
NCBI
GeneID:107512815" ncRNA 1..409 /ncRNA_class="lncRNA" /gene="LOC107512815" /product="uncharacterized LOC107512815, transcript variant X1" /db_xref="GeneID:107512815" ORIGIN // cgtcagccggcgctgaactgtgacggcagcgctcacggacccgcggctcgtgacggcattattgggggcgaccatcgacctggatattttttctgcatatgaaaccccgactgacaatctcttcttgcgacgctcgacggtgaagcgccctgttcttccagcagccacggcctctcatgagaagctgctgtcatttaagtgacaacctgcttacaggaaacctctccatgaaagaagaagaaaacaggtttttatcgaataagcagtaaaccagaacgtgacgtgcatccaggcaatccagtgggacatctcacctggacagagccagactggtgcgacctgtcacacacacgttctcgggatgagcaccagcttgtcttcaggtaagaggacttgacggcaccattta
position 115
XR_001597393.2 -
Rousettus aegyptiacus (Egyptian rousette) -
NCBI
ORIGIN // atggggcccaaggtccaaaacaggagctatgaggccttccaggtggcacttgccaaagagaatgaggcagaaaatcaaacttccgactccatcagcgagatgtcctaccagcagaatcagcagcagtgccagtcccctcccaagtgtcccaccccgaagtgccctccaaagtgtcccccaaagtgcccctcaatctcttcttgctgcagtgtcagctctgggggctgctgcagctccagctccgggggtagaagctgctgcagttttggaggtggcagctcctgcctgagccaccacagacgacacaggtcccactgtcacagatgccagagctctggctgctgcagccagccctcagggggctccagctgctgtggagggggcagcagtcagtcctctggaggctgttgctga
position 191
XM_032843692.1 -
Lontra canadensis (Northern American river otter) -
NCBI
LOC121066939" /db_xref="GeneID:121066939" ORIGIN // agacacacctgatgatttattattttcagtagcttatttgtgaatatgaaaaaatgtctttcttgatattcaccaaatgatataaatgcctttactctccagctcttcattttttctgctcactggtgctttgaatgcagtggaaaggcatttctggtctccatggcttctcttaaatgcacgcagagaagggaacataatagagatgatgagccctagcaaattagccaactgcaatctcttcttgttcagttaacgcgcctgtacagccagataccagccacgggagcaaagggctgtgagaggagatttggagcccaagtataggagtagagaagctctcagctgtttgtagcatgtctagaagca
position 235
XR_005818030.1 -
Cygnus olor (mute swan) -
NCBI
ORIGIN // atgaaagaagctgcaagggtggaaagagaaattgctatccaccccgggaaagaggtgcttattaaattagtggcgcaagctattcccacgtatatgatgagtgtattcagccttcctagcggattgattgatgagattcattcgttgctggctcgattttggtgggggtcctctgacactgataggaagatgcattggcatagttgggatacgttgtgctaccccaaatcgatgggcggtcttggctttagggacctacactgcttcaaccaatctcttcttgcaaagcaagcatggcggttatgtacgggggaccagactcttctttatcggctgctgcaagcacgatactttaagtcttcggaatttctggaggcgtga
position 271
XM_057395547.1 -
Beta vulgaris subsp. vulgaris -
NCBI
Wuyts,J., Martin,F. and Grigoriev,I.V. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (19-NOV-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA atgtactctcggtctccatggcctgttgcatctcctgctgcaccactctcaagtggtaatcaatctcttcttgtcattcacggcgaacttcctcttgcctctgttctcaagtatttggatgagaattgtgtcgatgagaccaacattgtcgatggtgacacagacgtcgtcaatggtgacgcagacgtcgtcaatggtgacgcagatgtcgtcaatggtgacacagacgtcgacggtgatgtagacgtcgtcggtgttgacacagatggtggcacagacgtcgtcgatgatgacacaaatggtggcacagacgttgttgatggtggcacagacactgttggaggtgacacagacgtcgaggttgagc...
position 61
XM_001879458.1 -
Laccaria bicolor S238N-H82 -
NCBI
Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark atgccttatgtagctgctacaattaaagaggctatgggatggagggcagttgttccgttggcttttccgcatgctactactcaagcgtctgtgactgacgttaatctccgtgatcagtacggttatggacccggtcgtcggattcgtcctgggatgcatcttgctgaacgcaatctcttcttggctatcgcgaaaatgagttgggtatttgatgtcggtactggtaatggtgaaaagacaaggttgcctattgaaccggatgttgatcatcagacgggatattgggagggcttgatcttgggtgctcggccattcccttgtcagatgtctgtgaggtctgaggcgagaagagatgccattgtgcgggaatttcagaagatgaattctgatatgttttcgagattcgcattttga
position 171
XM_056644879.1 -
Penicillium citrinum -
NCBI
JOURNAL Submitted (13-DEC-2022) Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark atgcgcgccgctttgacgtgcagttgttcccatggattctatatggagaggaaaattgtgtacagcgttggtttgggatttatgattttcagcaaagtcagtctcaaaaagactgataggctcgtccttgacacggagattatcaatctcttcttgatcaatctcatcaccactgccaccatcgaagctctcagggatatggtagacaacgtcctcagagaagttgtaactcgcagaagtgtcattctcgcacgcaaaatcgtcaatgttgccaaaaacaacatcctcgttctcataatcaatgtccgattcagagacccccggggcctgctcaagaacgaattctggatcctcggggacggctgccttcttttgctgtggatgggatttcggttgagcagcagcagcagcagcagcagaagatggagcagactgtaa
position 144
XM_056924418.1 -
Penicillium angulare -
NCBI
protein LOC134258183" /protein_id="XP_062596710.1" /db_xref="GeneID:134258183" /translation="MMQSLLVFVISVASIKTLHGSNGVMYPSSLSTLNEVPNCPRNQHDWEKAAARKDCNQISKSDNKPFVYHCLINEWANATVEVCAPTWFVSGFCAMYSSSDARVIDNFNYDCTHYTPPCPQRYISSEAYKYGVCYDI" ORIGIN // tccattaacacaaagtcttggtaaaaaagtaaatgatgcaatctcttcttgtatttgtcatatcagttgcatcaataaaaacactgcatggaagcaatggagttatgtatccatcgtcattgtcaacgcttaatgaagttcccaattgtcctagaaatcaacatgattgggaaaaagctgcagccagaaaggattgcaaccaaattagtaaaagtgacaacaagccctttgtttatcactgtttaataaatgaatgggcaaatgctacagttgaagtatgtgctccaacatggtttgtctcaggattctgtgcaatgtacagttcttccgatgcaagagttattgacaactttaactac...
position 39
XM_062740726.1 -
Saccostrea cucullata (small rock oyster) -
NCBI
including 41 samples with support for all annotated introns" /db_xref="GeneID:107337268" ncRNA 1..444 /ncRNA_class="lncRNA" /gene="LOC107337268" /product="uncharacterized LOC107337268" /db_xref="GeneID:107337268" ORIGIN // cagaatgggtgttcctcttgtggttttgcttgaattctgttctgagggtgataacgtcttgatgccgtcaatctcttcttgtctgctaatgagtggctcaaatttgttcccacgaaagaggtggaaaatccgttctttggacaaacaagtaattttgggattccagcatcttggtctttaatgtttggatcaccaatgcattggcatggaaacctattttagtgaggcagactcatgagttatgtacttaccataactttcacgtttgtttgatcactgttttgcgcttagtttagcaaggaacctctccatgttacgggtcattatttgtagtatttgctcaaaacgttaccatgaaacagctaccacgtgtcaaa...
position 69
XR_001562778.1 -
Acropora digitifera -
NCBI
gcggcggctgctgctgctgctgcttctcccaggggcgctgctgagcttcctcccgcaggcgaccccgcacccgagtgtgacacaccgttacgaaaatgttaaagcagtggagatatctgtgcagccaactgcagttgaagaggttatatcgggagggaaagatgctgttgaagtccagcatcaatctaaaaagaagaaaaatgacattatagagttgaaagagaccttggaggtcttctagtccaaatccctgctcaagcaggagatcctatccattctggacaaattactatccaatctcttcttgaaaagttccaa
position 433
XM_058156240.1 -
Ahaetulla prasina -
NCBI
CA 94598-1698, USA atgaccgacaccgcggactttgagcaattttgcttaactacactctacaatgctattccgatgctcgacaaccccagcgaccggtacgagtggaataatagggtgtgcgattttattgagatttcctctgtcgccgaagatggtgctcctccaccaaacaaagatcaggcaaaggaatggtatcgccgacagaaactctacacagccatgatcatgaagaagctgtcgcacaacgctgcgccgcgaattaaggccttagggatcagtgacgtgcaatctcttcttgaagctgtgcgagagcgcttcaactttagccgcctcaaggacgaggcaatcgaggaagagtaccgatccggccagcggggcaatgagccggcgaaggcgcagcgtgttagcaaccagattcaaactcttacccgccagatattgatatcaccggacgaaaccagatgccagattcacatagacaaggttccgttttgctcattttgtcccaccaaactcgcacagcaacccagaaacatttag
position 274
XM_033826478.1 -
Trematosphaeria pertusa -
NCBI
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA tccaatctcactcaaaatctcctccatgttcatctcttctccacctggcaaaagcttctgcaattccttcaatctcttcttgatctctcctccttcttcttcttcgtcgctgtcttggtgtttttctccaccttgtctcttgctcgatctttctagaatctcggaaggagaactactagtgctaattggatcatcataaggggaagataatagcttctgttgcaagaaacggctccacgcgaattcttgagcagacaatgcgaaagccatgtctacttcatgtttcacgggttcttgtttggttggagagaaaagactcgctttctcttgtttataatttgcctctccatgtgaaatttgtttgcttcgtcggaactct...
position 70
Synonym: F19F24.17; F19F24_17
NM_127454.2 -
Arabidopsis thaliana (thale cress) -
NCBI -
TAIR
gtgattttagacattgggaaatggtggaatcatatgagcagcatggtgatgaaaatgatgggcatgttccatatgtaccttctggtgacagaattatggaggatatgcgggattctatcactacagagatggctgaaggaacgagacttccatattaacagctcccggtatttcaatgttatgattcttggacctacacaatcaccttatgaaggagttgggtttgaatcgagaagcaaatacttgtttggtaaagtctctatctagattaagcaaatcgaggaacaaaaccaatctcttcttgctctgttttaagacactgctttgattattatgtccctaatcttacattatgaatgtatttcactaaagcagtgacattggttggttt
position 292
XM_021033133.1 -
Arabidopsis lyrata subsp. lyrata -
NCBI
org REFERENCE 4 (bases 1 to 413) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA aaatgcaatctcttcttgtattctgtcttgccacaattattctatcaaacttcacagaggcttctgcagatttggagacagcttcacaaagtctgaagcatccgaggaatttgggatggaaggctcctgaaggacatcgcgaaaaacgatatggtggatggggaggtggatatccctacggcggctacggtggatatggtggaggttacggtggcggatatggaggcggatacggaggagggtatggcggacgatatggcggaaactatggaagcagctcatggggatcatattcgagttatagttctggtggatacag...
position 6
ggcctcttatccacgtctgcagaaaaatcactcacgggatttgacatctgctgcacaccatggagaagacaccttattgatgaaaaagaacacagttcctgaggattgctctgggatggggaaaacttgatcatcttctgccccttgtgctcacagaaactgtttgaggtctgtctcctggggaccccaccctccatttttaggactgaatacctgaagtacagttgtcatcctgttgaatcttatgttacctgcattttatgtcttcaacttctctggttttgtttaagcaaacaatctcttcttgagaagggacagaagggaaataaaattctagatacccaatgtgtccaaaaa
position 422
XR_008998512.1 -
Manis pentadactyla (Chinese pangolin) -
NCBI
aatcttcagttccacagtcacctggtgagtctggggagccacgcctacatgtctgctgccaagcacatcaacaacaccacacagcagctgctcaagtcacatgttgctatccaggacgtgtctcacaacatgaggctgatgaccaacgacctgttccgcctggaggacaagatcaacattatctcctcctgtagcctgttacctgacatcaacatagaactgtcgtcatagcaacaccatctcctcctatgacctgttgccaggcatcaagatagaactgttgtcatagcaacacaatctcttcttgtaacctgttgcttgacatcaacgcagaactgttgtcatagcaacaccatctcctcctataacctgttgccaggcatcaagatagaactgttgtcatagcaacaccatctcttcttgtaacctgttgcttgacatcaacgcagaactgtcatcatagcaacaccatctcctcctataacctgttgccaggcatcaagatagaactgttgtcatagcaacacaatctcttcttgtaacctgttgcttgacatcaacgcagaactgttgtcatagcaagaccatctcctcctgtta...
position 649
XM_046710202.1 -
Haliotis rubra (blacklip abalone) -
NCBI
aatcttcagttccacagtcacctggtgagtctggggagccacgcctacatgtctgctgccaagcacatcaacaacaccacacagcagctgctcaagtcacatgttgctatccaggacgtgtctcacaacatgaggctgatgaccaacgacctgttccgcctggaggacaagatcaacattatctcctcctgtagcctgttacctgacatcaacatagaactgtcgtcatagcaacaccatctcctcctatgacctgttgccaggcatcaagatagaactgttgtcatagcaacacaatctcttcttgtaacctgttgcttgacatcaacgcagaactgttgtcatagcaacaccatctcctcctataacctgttgccaggcatcaagatagaactgttgtcatagcaacaccatctcttcttgtaacctgttgcttgacatcaacgcagaactgtcatcatagcaacaccatctcctcctataacctgttgccaggcatcaagatagaactgttgtcatagcaacacaatctcttcttgtaacctgttgcttgacatcaacgcagaactgttgtcatagcaagaccatctcctcctgtta...
position 662
XM_046710201.1 -
Haliotis rubra (blacklip abalone) -
NCBI
misc_feature 144 /gene="LOC110427542" /note="gag-polypeptide of LTR copia-type; Region: Retrotran_gag_2; pfam14223" /db_xref="CDD:464108" ORIGIN // atggcagaatgcagttctattagaccccatgtgctgaagatgattgaactcatcgagagacttggacaattgggattagcaatggatcatgagcttagtatagacttagttctacaatctcttcttgacagctttagtcagttcatgttgaacttccatatgaatcgattggaagccacttttcttgaacttttgaatatgctaaacatggtagagtggtccatcaggaaagataaaggatcattgcttcttgtttcttcttttgaggctcatacgaaacaacagaagaagaaagcccaaaaagggaagaaggtaaaatctcaaaatgagaaggtgctgaagcctaagagaggtgtcaaaaaggacaaagagaaagatattttgccatcattgtggcaaacttgggcattggaatag
position 115
XM_021443097.1 -
Herrania umbratica -
NCBI
tgcatagagctgaagtgcttctgcatcctgatagccatcgtggaggtgctcatccgcgggttggatcgtttttttgtggatcgcgacagcatcctgggatttttgtccctcgtggtgagcggtatctacgtaatctgctgcatattccttcttcttggagccgtgctgggggtaaggtactttctgttgccctacctctcggtttcctgcctccgcttccttattttggttgccgagggcgtgtttgtggccacggaaggcttcgtcaatgaatatcttgtcttcgatgttctccaatctcttcttggtctatacttttggctggtggtcttctcctactacgatctgttgaaggacacctgagtttatatatttgtgcttacttttatattgtaaaaaatacttgtttagatctgagt
position 389
XM_037860603.1 -
Drosophila subpulchrella -
NCBI
RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:104847975" ncRNA 1..576 /ncRNA_class="lncRNA" /gene="LOC104847975" /product="uncharacterized LOC104847975" /db_xref="GeneID:104847975" ORIGIN // ctggtgaatggaggctgacttcttgctctccaagaactgcaagtagctacccaatctcttcttgaaatcagcagtctgtgagctcactgtagtggggcagccagaaccttaaagcctaacaatgggacagtgacaagaagagaggtggagagaaactttcacagtccccctcttccactccaagagaagaaacacacggctttattatggtaccaagtccacctccagatagaagcaatacatctcctcttgaacaagactgtttctccagtttaagcaaatctatccaaactacctccaagctgcagtgaatcatacggtggctgaaggaactacactaagaaggacttgaaagactt...
position 52
XR_776269.2 -
Fukomys damarensis (Damara mole-rat) -
NCBI
cagcgagtggcgaacaatctcatgccacccataatactcaaagtcaaaatacgactggtcaatccaattcgaccgatccacctcggagctcacctactctggaacgtaccctctctgaggcgactactgtcgtggatgtaggtgccggtcaatctcatatcgacctacccagcttcacggtccgaacaactggtcaatcctgctgcgaaacccattcaggcgagattgcgaaatgtatgtgttatagcgttacgtgcgtttgtggggcgggtttggcgattggtacagtggcggcaatctcttcttgctgtaatggatgccctcccttctaa
position 410
XM_066225539.1 -
Kwoniella europaea PYCC6329 -
NCBI
JOURNAL Submitted (30-NOV-2022) Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark atgcaggatatctacactaagatggatacaatggtagcggtgattctaacagacgtaaactttatgacaaacacaccgataattaccgatcaagcggacgagcaggaggtctatgagggatactcaaattttgtacaatctcttcttgagctcatggacgccgtatcgagcagcgcagcccagctgaaatcgatcaacgaaacaaccaagaataacgttccctttggaattcgcatcttgcaaactgccgttgacgtgagttccctaattaactcttcgctaccacctgaggagatgatcgatgagatgctgacaccttacaaggcctacttctacaacatcatcggtctcttcccagccaacagcgcatacaacgcccaggccaacaaccagaaggctcaggtggatacgcattgcttccaggccgtctgggcatttgatcgcaggtat...
position 136
XM_056876776.1 -
Penicillium crustosum -
NCBI
Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark atggcagcctcgttgtcttcgtcggttacatcgctgcagtcatcgctgcagctgctggataattcaataaccaccctcgactcgggcgtgagcgactttcctcgcctttgtaaggtcctttctacaacgcgacattttgagctactaccagagccaacactgcgtgaggcacaacaatctcttcttgatgagatcacccccagcatcgcccatcttctcacactatcatcaaaccacgtcgaaaagctcgcacgccgtgaggaaagcttaaaagcaaaatgcgatcttcaagaaggaagactctcatctaatgcagagagccgcccatctgctcctcgcagtcaaccccagagcagcgcattgcggggtcgcatggcggggtctagcgctggctcatcgggcagcgcagcagccaaagccgcagaatacaagagactcgtacagaagaaagagcgactcaagtttgcggttgaccgattgga...
position 175
XM_056959224.1 -
Penicillium brevicompactum -
NCBI
gtcttaaagctcatcgaatccaccaccatggatttccgcaacctatcattcactctcctcctgctatccactacagtcatgttatatttcagggctctattagcgcatcccatccacattattagcacccctgaatcagtgcagactgcagaaccagcgccaaccgacgccctcgccttcctcgacgagcccgtcttcaaaccactggcatctcacatagcagaccacccatatccatggcgtgataaacgtccattccaggagaccaattatgcgttactcatgggtgcagttcaatctcttcttgaggctgaggttgacgaggaagagggtggtgtgggtttgaacgagggtcatgggcaacaggacgtcgttgagattaactcgtctgagacatacattctctgggttggggataaggatgatgagaagtgttcttgcgcttag
position 301
XM_025656494.1 -
Aspergillus piperis CBS 112811 -
NCBI
Research, Australian Wine Research Institute, Corner of Hartley Grove and Paratoo Road, Urrbrae, SA 5064, Australia atggttgcataccaatttagttccgtttgtgagaattgtgaactaaatgtgaacatgagtgactcagataaaacagacaagaaatttccacgctcttctctttccagaacaactacaacgactagcataactacccctgttcacccaatggaattggttgtacaatctcttcttgaatcacctcttgagcttctaaatttgagtattcattcattgtatgaatcgcaaatgattctcacaacaatattagatcgaatgcagcggaaacttgacaaatgtcttaggggcattggtaaaagtaggcaagaaccaattactactgacacagatacgcaaaatttacaatatccaaacgagcatcgaaatagggcaaactcagatgatgatctgacaacacagccaggaccagacaaaagcttgacaattgaagaatatgctgccagaattcatacgatcaagctccgcattgtaaaa...
position 163
XM_041279492.1 -
Brettanomyces bruxellensis -
NCBI
caaaacttttgaggggcgctcaaatcttggagatcccagttttcacaactgaacaaaactcgaaagctcttggatcgacggtagacgttctcaagaaagatatcccagaaaattccacaatcgttgacaagacccgattcagtatggtattggacgatggaacaacagataaatggctacgcgatcacaaagttcaaaatgtgatgattgtcggaattgagagtcacgtatgcgtcttacaaacgacattggacttgctcaagaaaggcttcaacgttttcatcattcgtgatgcaatctcttcttgtaataaacaagaagttccacttgccatcgaaagaatgcgtttggctggcgctacaatcacaacatccgaaagcgctctgtttgaactgatgctagattcaaaacatccccatttcaaagctatcagtgggctaatcaagacggaaaaggacagtacaaaagccgctcttgaagcactcacatcacgtatttga
position 413
XM_025497511.1 -
Meira miltonrushii -
NCBI
using gene prediction method: Gnomon." /db_xref="GeneID:132711909" ncRNA 1..112 /ncRNA_class="lncRNA" /gene="LOC132711909" /product="uncharacterized LOC132711909" /db_xref="GeneID:132711909" ORIGIN // caactctaatggctctccagtacacatctggaactgctggatggcctcgtggtgagacctcttatacccagggggaggagtcagaggcaagaagagattgcaccaatgaggg
position 88
XR_009622629.1 -
Pantherophis guttatus -
NCBI
Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA atgaccttcaatccatttgatttattttattctattacagtcatcactcttgattattcttgtaattatatttattcgagaatatctcgagtgttaccgcttaagaaaccagtggaagagaacagagaattaaaggatgaatcagcaagtaaagaatcagatcggatcgtatcacaaaatcgacagcgtcacagttcaatctcttcttgcccagcaaatgacacaccactcattctttcaccttctacttctacctcttccctttggagtttagattcaaatcgttcaagagtagaagaaatgatttatttattcgaaaccggaaatcatctacagaaacgaagatacagtatggatgcttgttatccaacttttattcgagaaagaaaatttgaatatttacccactgtgaatgaatggagaaagagagagaatagcacgacttttcctcctattcgtttgtcgacatccaattccacgtaa
position 197
XM_067663713.1 -
Rhizopus delemar RA 99-880 -
NCBI
ttcctcaggaacaaggagttgatattagctgccggagtcgttccgcttctccaggaaatgacatccaaccatgactctcatccatcagcaacggctctatatctgaatctttcctgccttgaagatgccaagcccgtactaggcttgagtcaggctgtaccctttcttacccagcttcttaaagatgaaactgcacctcagtgcaagcttgatgctattcacgccctttacaatctctccacctaccatgacaatattggatacctgccttcggcaggcattatcagtggccttcaatctcttcttgcagatctagtgaccaaatgtggacagaaaagtcaatagctgtccttatgaatttagat
position 490
XM_048275127.1 -
Rhodamnia argentea -
NCBI
cctctaccaaagatgccaacctgttgccaccagttacgcgtcatgtgctggctgtgcttctgttgctcaaagctccagtagtcaagtggccacttttcaacaaagcatccagcgctccttcaccacttggcaagagatcatcaagatcggaaaatcccgtttctccgacagatggcaatctgacttcgcaccttcatttgcaagattcgatgtcgttgttaaggcggcgaacagtgcttgttcgtccttgaatctcaagctcgatgtgctcttgaaaggtttgcgattggacctcaatctcttcttgggcatcaacatcaacctgggaggcatccttggaatcgtgggctcacttctcggcgggatcctcggacgaagagaagttcagctcttggaggaatag
position 525
XM_053170415.1 -
Puccinia triticina -
NCBI
pfam09402" /db_xref="CDD:430586" ORIGIN // aacagcagcaaacaagggtgccgtaaaaggcggtctgagcatcccgctcggccggacacatcactctgatctcttccaaatgaagcgcgcaaaacccaagtcccattccaaaacttcaaatcattctcacaattcttctccttctttgaaatcgttcatagaaccccctcctgatttctttccctcgaagcacgagttcctcaggctcatcgtcgtccttgcattcgcatcagcagttgcttggacatgcaatctcttcttgacatcttttattaatccctccaccaagcccttttgcgatagcaacgtagactttccggattcattttccgatgattgtgaaccttgtccaagtaatggagcatgttacgatggcaaattggaatgtctccagggctaccgaaagcatgggaagttgtgtgtagaagatggagatattaataaatcagctaaaaaaatttcggacagagtaaaatgtagcctatgtgaagattatgctcagtatttgtgctatggagtcggatcagtttgggttcaagaggatgaaatatggaaaa...
position 250
XM_054953827.1 -
Prosopis cineraria -
NCBI
ggcagtgttagattcccttgtgccgggagacctggtggagttccaaaggtcgtggctcttctcccactgggccgtttatattggtaatgaagaagtggtccattttattgaacgcaattcaggaggtgtcttcagttcctctagtgagcgttctatgacgggggtagttcgaagggattccttttggacagtggcagggaggagtaaggcgttcaaaaacaacagaagggacgccaaatacagctgtgatgtgatagtgacgagggctctgtcaaagctgggagtgagcgagttcaatctcttcttgagaaatagtgaacattttgtagcctggtgtagatatggtgaagagtgcagtgaacaggcacaaaccatctggacaatgtttttggggtctatggctgtaattgtggggggcattgccgcactcactggccttaggcgatag
position 321
XM_013559232.1 -
Lingula anatina -
NCBI
China Agricultural University, Yuanmingyuan Xilu 2, Beijing 100193, China atgcgcttcctggctggtttattgactttggcgactttggcgtcgtccgttgtcgctcatggcattgtaactcaacctccaactcgcacactcgggagtgccatgattgcagcttgcggtgaaggtgctgtctcggctcaaaaatccaatgtcaagggaccgattgaaagccagattgccaagattgattccaactacaagcccgcgcaatgcaatctcttcttgtgccgtggccaacagtttgctgacaacaaggacaaagtccaaacctacaagactggtcaagtcgtgaacattgtactagacattgagaaccaccatcctgttggctatgcaaacgtatctgttatcgatactgccacaaacaagatggttggcaagcctctgattgcatgggatccttactttactggttatccgtaccctaaggatcaagagaacttcaacgtcactattccagagctcagcggcaaatgcaagactgccggagaatgtgttctacaataccactggtactcccgaacgg...
position 213
XM_043328844.1 -
Rhizoctonia solani -
NCBI
cgtcataaggatgacgatgatcaggcagcatgcgtgatgctaaccagtatgactcctgagctccaaaagcagtatgagcacatggatgtccaatccataattcttcatcttagaaaattgttcgataaggaatggcgcattgagagatatgagatctctaaagaactattccgatgcaagatggtagaaatgagttttcttagaccccatgtgccgaagatgattggactcatcgagagacttagacaattgggattagcaatggatcatgggctaagtatagacttaattctacaatctcttcttgacagcttcagttag
position 481
XM_018120908.1 -
Theobroma cacao (cacao) -
NCBI
taccggttttattcgtgtatccactttctgaggactgcgtgttaccaacctgacgcacggaaacaaagacgcgaaggagtcatactggtactactagtctttccttggattttgacagctgtgtttactttcggatcaatagcacttggttgctacaagagatataatcgtttcgcgttaatatacacttacagctgctcccattgcgacgttataccagggatatcgttcactgacgtgaacttttacggtggacaagctttaccctcaattcatggcgctatccagcaaagacaatctcttcttgatgctcgacttgcattccaatttatcgttatatgcctctctcaatacctcgctgcattgctcttctacattgttccgaagatgagcgcaggtgctgactggggagttctggtcacaaacagtattggttcgttttaa
position 430
Synonym: Necator_chrV.g19713
XM_064205395.1 -
Necator americanus (New World hookworm) -
NCBI
CDD:439250" misc_feature order(265..267,271..273,352..369,427..432,436..438, 496..501,505..507) /gene="LOC101211270" /note="putative effector binding site [polypeptide binding]; other site" /db_xref="CDD:439250" ORIGIN // atggcaaaattggcttgcttggtctcttttttctttttggttctttctcttttgggcctttctcaagcaatctcttcttgcagggagccatgtcaaaccttgaaaaattgtaaaggtcaattgatttgtataaatggccaatgtaatgatgatcccgatgttggaactcgcatttgttcaaccgacagtgataacggagcagatggagaaaaatttcgttgtgaggcatttggaagattacattgcaaaggcaaatcgttcccccaattcaaatgctcgcctcgagtgacttcctcaactcgagctatcctaacaaataatgactttagtaaaggtggggatggaggagacccgtctgagtgtgatggaaagttccat...
position 68
XM_011658707.1 -
Cucumis sativus (cucumber) -
NCBI
polyA_site 511 /gene="LOC135961545" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN // atgaaggtgtatatttctttattgatgcttgttttagcattatttgtcccacttaataaagcggtattaaacgatgttcacgatgctattggatggtcaaatgtggatttgaaaaatttccaatattttaaaaacttgccatcgcaagacccaaaaagagcagcacaagccaatctcttcttggaacattttcaaaagaaaaaagcagttttagattatttcgaaaatttatttttgggcaattcaccattcacacaagagagtgaaattccatttaatcctcactttggtcgagcgtggcgtccttattatgtacgaaagtttggttggaaaggagaacgattaatcgatgctttgggcaaagggtaccccattaaacaattgaagcattttggagctatacctaaggactacggttccaagtattatcctagctaattatttcatataccatttagtcatcacatatttataaatatttaaaataaactatttatt...
position 171
XM_065513049.1 -
Calliphora vicina (urban bluebottle blowfly) -
NCBI
Zhan,B., Aroian,R.V., Pafco,B. and Schwarz,E.M. TITLE Direct Submission JOURNAL Submitted (21-AUG-2023) Molecular Biology and Genetics, Cornell University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853, USA atggtcgtcggctatacagtcatagtcatcagcgtttaccgtaatcgtagaattcatggcgctatccagcaaagacaatctcttcttgatgctcgacttgcattccaatttatcgttatatgcctctctcaatacctcgctgcattgctcttctacattgttccgaagatgagcgcaggtgctgactggggagttctggtcacaaacagtattgttatggaacaacagacatctcaaaagtcgctgccgtcagtgtcaacgcttctgtttcgcgacattttgtggtccggtaacggtcgcagcggttgtgatgctgagctgcagttaggaaagctttctggtttcactcccgaaaaagtggagctcattgtgctccacattcat...
position 76
Synonym: Necator_chrV.g19713
XM_064205394.1 -
Necator americanus (New World hookworm) -
NCBI
ggcacacatcttcaacgacaccaagttcttcagtcaacttgagctcggcaatcacgatgttatccagacggggaagaaagacgcaactctccccatcgaaggcactggaagggtaaccttacaatggagcacctctacagttttgctagacaactgcctctacgttccagatattgtaatcaatctcattagtgctggtgctctgctagaaaaaggttgccaaatcgttgcaaagaaaggtagctttactgtctccaaagaacagcaagatctcttcaaaggctccatcgatagcaatctcttcttggtcgataatttgtatgcaatcatctaa
position 558
XM_047941149.1 -
Puccinia striiformis f. sp. tritici -
NCBI
AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA gaaggcgaccacgtcgtcgccaagaagagattgaagacgacgaatggagcgaaagtagtaaggaggggttgagggggggggaggtcgggatcgagatggcataatgtaggaaccggatggaagagtctaaaag
position 21
Data Export:
Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.
Debug Info:
Redirect URI : http://ggrna.dbcls.jp/both%3acaagaagagattg
lang : en |
div : |
spe : |
query_string : both:caagaagagattg |
format : html |
download :
0.000 | 0.000 | search_start;
0.091 | 0.091 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((nt:caagaagagattg)%7C(nt:caatctcttcttg))?to=0&format=json
0.143 | 0.052 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((nt:caagaagagattg)%7C(nt:caatctcttcttg))?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.150 | 0.007 | cgi_end;
GGRNA ver.2 by
@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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