ver.2
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Previous release (v1)
2024-05-15 11:07:44, GGRNA : RefSeq release 222 (Jan, 2024)
Summary:
Results:
Matches are highlighted with green background.
Overlapping matches are dark colored.
taataatgatgtggaaactttggttctgagtaaaacagaaggatcggctgctctcttttgcagacggctgaaatatcgagtaaaaactgatgaaacatcagatcaaagttcatcagatactgacacagaagatgagcttcccatctccacatctccaactcctggtgaagacttcatcatgcgaatacacacaggagaagcgccctatgtctgtgaactctgtggtaaagcgttcaaacgtaaacactggcttaaagaacacttttacatccatactggtgtcaaacgcaagcgcaagaagagattgagctgtgatcagtgtgaaatgaagtttgagtgctcctctgttcttcaaggtcatttaaataagcacagaggcgagaggccgttcgcctgcgttcagtgcgacaaaacctacttcaatcaacatgatcttaatcaacacctcagagactgtcattcagaaaaaaagcacggctgctatttgtgtggaaatgaattttctcgccgctctttactgcagaaacacatgcggatccacacaggagagagaccttactcctgtccacactgtgagaagactttcccctataaatacag...
position 477
NM_001386665.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
aatgtggtgataaccagcatgctcagtcgtctctgggtttttttcagaggtattctgcgagccctcatccccatgtacagaagaaactgtgaactgctccagaaggtgtctcagtctcagcccatggcctatctgactgacttcactctacctgaggacctgaaagacttcctgtgcctcacataccctgatctaaagattgaagaagttaccaaagacctcttaaagggcacaagaggaaaaagaaagtccaaattttctctcctttccaagttgtttggggagaccgagcaacaagaagagattggagaaggggagagagatctgatgccaatattaagcgctggacattatgaagtttctagcctggacctcggagcagcagtttcacaacgacggaccgattactcagatgtgtcaccctatggactggacataaaggctatgcttcagcagtcttccaaaaccaccaaacagaaatctttggagcaacagatgaaattggacagctccagtaaagcatcattgtgtcagaagaggacgtttttgaagtcactgaagaagacgtcttcttttagaaacatggcagccctattaaag...
position 820
Synonym: fi11c01; si:dkey-22a1.3; wu:fi11c01; zgc:112065
NM_001017650.2 -
Danio rerio (zebrafish) -
NCBI -
UCSC
taataatgatgtggaaactttggttctgagtaaaacagaaggatcggctgctctcttttgcagacggctgaaatatcgagtaaaaactgatgaaacatcagatcaaagttcatcagatactgacacagaagatgagcttcccatctccacatctccaactcctggtgaagacttcatcatgcgaatacacacaggagaagcgccctatgtctgtgaactctgtggtaaagcgttcaaacgtaaacactggcttaaagaacacttttacatccatactggtgtcaaacgcaagcgcaagaagagattgagctgtgatcagtgtgaaatgaagtttgagtgctcctctgttcttcaaggtcatttaaataagcacagaggcgagaggccgttcgcctgcgttcagtgcgacaaaacctacttcaatcaacatgatcttaatcaacacctcagagactgtcattcagaaaaaaagcacggctgctatttgtgtggaaatgaattttctcgccgctctttactgcagaaacacatgcggatccacacaggagagagaccttactcctgtccacactgtgagaagactttcccctataaatacag...
position 508
XM_021480895.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
atttacacgaggactccaaccatgtatcttgactttttgctgaagaaagatgcaaaacacatgcagcctgttccaaaaggttggacagctttcatctacaccctcgcaggttctttatgcactggcccagacaatgatttgcggacaatagagccacaccacacggtggttttggaaggtggtgactgcgtcagaatggaaaacaaggctgctgaggactctcactttgtgttaattgctggcgaacccattaatgagcctgtagttcagcatgggccctttgtcatgaacacacaagaagagattgacaagaccatctcagactacagatcagccactaatggatttgagagagcaaaagtctggcgatcaaagattggtcaacagttttaaagtgtcttcaagatccttctctgagggaatatatctactttggtgcctttaccttcagcttcagcagctccgaacatacattaggccagggatcactaaacttgttcctggtggtctggtgtcctggagattttagctccaaccctaatcaaacacacctgaacaagcgaatcaaggtcttactaggtatacttgaaacacccaggc...
position 1128
Synonym: zgc:92778
NM_001002550.2 -
Danio rerio (zebrafish) -
NCBI -
UCSC
atcctgatcgcggagctggagcagctgcggggcaaaggagcgtcccgggtcggagatctgtacgaggatgagatgcgggagctgcggagacaggtggatcagctgaccggggaaaagagcaaagtggaggtggaccgggacaacctaggggaggacatcgagcgcctcaaggagagacttcaagaagagatgcttcaaagagaagatgctgagaacagcctccgcagcttcagacaggatgttgataacgcctctctggctcgtctggacctggagagaaaggtggagtccctgcaagaagagattgctttcttgaagaagcttcacgatgaggaacttgctgagatgcagatccagatgcaggagcagcatttgcagatcgatatggaagtgaccaaacctgacctgaccgctgctctgaaagacgtccggcagcagtacgagactctggcctccagaaacctgcaggagtctgaggattggtacaaatccaagtttgctgacctgtcagaagctgctgcccgaaacaatgaagccatccgtctggccaaacaggaggccaatgattaccgtcgccagctccaggctctcacttgtgac...
position 699
Synonym: cb28
NM_131872.2 -
Danio rerio (zebrafish) -
NCBI -
UCSC
ttaaactttttttccaaatacaaacatcattttgccacggcaggacatgttgttggaggaattgctatcggagctgcagttttatctggagttggagttggagctgctgctggagctggtttagcagctttttgtgctggagtaggaagtgtttcagttgctggagctgctgttggaggtgttgttggaggtgttgttggaggtgttgctgctagcaaatatgaggaagaaataaagtggaagaagagaagaagagaagaagaagagagagaacaacaagttgacaaaaaaatacaagaagagattgagagagcaataaaggagattgatgagagattcagagaagaaatggtagctaaaaatcttaaagcagagaaacagagtgaggaagaacagagaagacaagagaaacaaagactagaggagattaagagagtaagagaaaagacagaggagagaatcagagcagaaattgaagctaaaaagcagagagacggagtaaggaagaacagagaagacgagagaaacaaaaacaagaggagttagagtgataaaagagacagaggagagagtcagagcagaaaatgaggctaaattaaa...
position 1991
XM_017354872.2 -
Danio rerio (zebrafish) -
NCBI -
UCSC
gagagcgaccagattcctgtccacaacatcaaatgcatcacactcttccatccgcaccagaaatgcaactgcagtttagtggttgcggcacgtggtccgtatatcttctggtgcttactgctgatctccaaagctggtctgaatgttcacaattcccacatcacgggtcttcattccacccctatcatatccatgacggcttgccacaataatgggactgttttaacatgctcactagatgggaaggttaagaagctaacgactgttttcacagacctagctgtcgagttcaagcaagaagagattgttctgcctgaaggagtcgcgggtcgacggatacacggtatatcaatcagtccaaacagtgcctacttggctgttctctccaatgagggtatgaacaatggcttccatcctgtcgctctcaactaccaggtacagttcatcacctttaagactccagatgaagcagcagctaagatgcttgatgctcacagtctctttagaaactctgatttgctggatttgttacgatggcggatactaaaagacaaaagcatcccttcggcctacgagaataatctagaagagaagctgcaa...
position 1435
XM_021473407.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
gagagcgaccagattcctgtccacaacatcaaatgcatcacactcttccatccgcaccagaaatgcaactgcagtttagtggttgcggcacgtggtccgtatatcttctggtgcttactgctgatctccaaagctggtctgaatgttcacaattcccacatcacgggtcttcattccacccctatcatatccatgacggcttgccacaataatgggactgttttaacatgctcactagatgggaaggttaagaagctaacgactgttttcacagacctagctgtcgagttcaagcaagaagagattgttctgcctgaaggagtcgcgggtcgacggatacacggtatatcaatcagtccaaacagtgcctacttggctgttctctccaatgagggtatgaacaatggcttccatcctgtcgctctcaactaccaggtacagttcatcacctttaagactccagatgaagcggcagctaagatgcttgatgctcactgtctctttagaaactctgatttgctggatttgttacgatggcggatactaaaagacaaaagcatcccttcggcctacgagaataatctagaagagaagctgcaa...
position 1443
XM_691843.8 -
Danio rerio (zebrafish) -
NCBI -
UCSC
AUTHORS Saito S and Shingai R. TITLE Evolution of thermoTRP ion channel homologs in vertebrates JOURNAL Physiol Genomics 27 (3), 219-230 (2006) PUBMED 16926268 aaactcacaacaaacagggaattgataagatcctaaaaccaccaccatgaacgagaaggacattgaggagggcggagtggccgtgatgccgaaagatctaagctggattccaactttcttcaagaagagattgtgcacaacgtttgtggaggactccttcagtaacggaggtctgtgtcagtgcggggcggcacgagaccatcacccatcagtggcactgggcgataacttcagcacagcagtggtcagtcagtggttcagcactcagcactcctctgaacagcccactgacgcttatggagaattggacttcaataacagtaggaaaagagacagctactttctgcgtctgtccagcaccacagatcctgccaaagtgtttgacctgatgaaggagcactggaagctgcaacagcctaacctggtggtgt...
position 121
Synonym: TRPM4b1; trpm4c
NM_001282153.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
gaagaggcccgggaacgttgggccgctgaagctgtacgcatccaagaacttcagcagcacggagtgaaggagacagagcgactcaatgccagcttggtggctctgcatcaagaaaactccagtctgcaggaagagctccagcaaacagacaaactgtcagaaaccatgctggagctaaagcagctgctggacaaaactgagggcgaacgggacgctgcacgggaagagatcaccgctgtgaaattccagatgagcacagagagcatgtctctcaagcaccaaatgaagagtcttcaagaagagattgacggtttgaaagatcagctagacacagagaggaagaagaaatcagagctggaggccaaattatccgaactagagggagcgaatgtggaatactctcgtctgattgaggagaaggactcgcacattacttactgtgagactttgctgcgtgagagcgagtctgagacacagcaactgcaggaaagagcatcaagatccaaagaggctcttagtgatgtagagaaggagagggaagaattgaagcagaaattggatcaagtgttgatggagactcagaaccagcatctccgcatg...
position 3279
XM_017353733.2 -
Danio rerio (zebrafish) -
NCBI -
UCSC
gaagaggcccgggaacgttgggccgctgaagctgtacgcatccaagaacttcagcagcacggagtgaaggagacagagcgactcaatgccagcttggtggctctgcatcaagaaaactccagtctgcaggaagagctccagcaaacagacaaactgtcagaaaccatgctggagctaaagcagctgctggacaaaactgagggcgaacgggacgctgcacgggaagagatcaccgctgtgaaattccagatgagcacagagagcatgtctctcaagcaccaaatgaagagtcttcaagaagagattgacggtttgaaagatcagctagacacagagaggaagaagaaatcagagctggaggccaaattatccgaactagagggagcgaatgtggaatactctcgtctgattgaggagaaggactcgcacattacttactgtgagactttgctgcgtgagagcgagtctgagacacagcaactgcaggaaagagcatcaagatccaaagaggctcttagtgatgtagagaaggagagggaagaattgaagcagaaattggatcaagtgttgatggagactcagaaccagcatctccgcatg...
position 3206
XM_009297091.3 -
Danio rerio (zebrafish) -
NCBI -
UCSC
gaagaggcccgggaacgttgggccgctgaagctgtacgcatccaagaacttcagcagcacggagtgaaggagacagagcgactcaatgccagcttggtggctctgcatcaagaaaactccagtctgcaggaagagctccagcaaacagacaaactgtcagaaaccatgctggagctaaagcagctgctggacaaaactgagggcgaacgggacgctgcacgggaagagatcaccgctgtgaaattccagatgagcacagagagcatgtctctcaagcaccaaatgaagagtcttcaagaagagattgacggtttgaaagatcagctagacacagagaggaagaagaaatcagagctggaggccaaattatccgaactagagggagcgaatgtggaatactctcgtctgattgaggagaaggactcgcacattacttactgtgagactttgctgcgtgagagcgagtctgagacacagcaactgcaggaaagagcatcaagatccaaagaggctcttagtgatgtagagaaggagagggaagaattgaagcagaaattggatcaagtgttgatggagactcagaaccagcatctccgcatg...
position 3279
XM_009297090.3 -
Danio rerio (zebrafish) -
NCBI -
UCSC
ttgcgggtggagaaaaagacaaatataaagctttaacgtgagtttatcagtgtgcctgattttacgtatgtattcagaagtcttaatggaccccgtgggaatgttactttaaatgcataacacaaaaaaattacagtcgttaagaatcgtgggaactttgaacttaaacctaatatggaaacgctattattaagttgcgccctgataagatatagcgccccctgtctgtggcactactgtataactctgtagcctctaccctccagtgccatgcagaccttcacattcagaggtcaagaagagattgtgagttcaataatgtaaatagagttttagtagagtataatatattatggaatcgttaaacactattttgttgatgataaataagtatggctttttaagagagagatttctttcctttggatttttttttttcgtggcaaggttattgtcggtttaaggattactttgtcaagatgctttttttgtttcgttatttccactgaaattgctcagattaagattaggaaagggaacactacgcaaacttgtggggcgtcatttgtgaaacacaatattaattttgtttgtgtgtgt...
position 5910
XM_021467292.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
Data Export:
Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.
Debug Info:
Redirect URI : http://ggrna.dbcls.jp/dr/seq%3acaagaagagattg
lang : en |
div : |
spe : dr |
query_string : seq:caagaagagattg |
format : html |
download :
0.000 | 0.000 | search_start;
0.076 | 0.076 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caagaagagattg)?source=Danio rerio (zebrafish)?to=0&format=json
0.096 | 0.020 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caagaagagattg)?source=Danio rerio (zebrafish)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.098 | 0.002 | cgi_end;
GGRNA ver.2 by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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