LOCUS       XM_009297090            4939 bp    mRNA    linear   VRT 15-JUN-2017
DEFINITION  PREDICTED: Danio rerio FYVE and coiled-coil domain containing 1a
            (fyco1a), transcript variant X1, mRNA.
ACCESSION   XM_009297090
VERSION     XM_009297090.3
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_007134.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jun 15, 2017 this sequence version replaced XM_009297090.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Danio rerio Annotation Release 106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4939
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="23"
     gene            1..4939
                     /gene="fyco1a"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 ESTs, 13 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 19 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:565649"
                     /db_xref="ZFIN:ZDB-GENE-110411-276"
     CDS             156..4649
                     /gene="fyco1a"
                     /codon_start=1
                     /product="FYVE and coiled-coil domain-containing protein
                     1-like isoform X1"
                     /protein_id="XP_009295365.1"
                     /db_xref="GeneID:565649"
                     /db_xref="ZFIN:ZDB-GENE-110411-276"
                     /translation="

MATGAAVGDSQIQRIIRDLRDAVSELTKEYKESGEPITDDSSNLHKFSYKLEYLLQFDQKEKTTFLGSRKDYWDYFSDCLAKIKGANDGIRFVKSISELKTSLGKGRAFIRYSLVHQRLADTLQQCLMNSRVTSDWYNPRSPFLKPHLSVDIISYLYELNDVQFDVASRGHDLDAEWPTFARRTLGMTSSPSHLWKAPSRSSSINSLASTYSQQHHEFPGSPDFGPGLLSDMSMQNSSILNDTSMSAIDELRLELDQSELKQRELIDRIQQLGDEGSELRGVVVELQRQLDVSLAAQGNHQELQRNLEVLIESEHALSREVEVLRDRETRREVSHKDLQDMLAAAERKNEELMTRLDGVLDEKGQRAASDFNSAQKIHELLNELKEAEKKRMDALAEGEEKRRHAEHLAEEVKVKDEALKEAEVKMAAWMEKGEQLQTRAVEQRNFMEKLQGALAVREKETSNLQRQLRDLQNSLENMEKQANVEKKRMQDDKEELEMKMNGLEGLLQSLRTQLKVKESDLLSSTKRVHFLERESEKLRSENQKLEYELENSTKKEAKKIDEYKDSCAKLIEQNTKLLQTVNKNEESKKELLENKSSLESELAGLRASEKQLRAQIDDAKVTVDEREQRLREENRNLDESLQKANMQLEESESSIRQKEQENKDLMEVQVTLKSALAAMQKEIRDINNQIGELEKNLGVARCNEANLNAQLKDKATQLEDREKLCEELQGRVEELESRQRDLEVEKTKAERAFVKQTEMIQSLEAQRNLAEKTQLEKSTCQAKETKEMALKLTLLEDQLGLSAKEVSKLQEEVVNLRAKLHSAVEEKDKTQAKLEVTEASCAELRILTEHLKKQAEEQNRLHVSELLQSSEHVDKLTSQLNQETSAHEKTTAALASAKEDLVALKAQNERMVLENAETRESLHRVNTEMAELGMTICKLTAEREEARERWAAEAVRIQELQQHGVKETERLNASLVALHQENSSLQEELQQTDKLSETMLELKQLLDKTEGERDAAREEITAVKFQMSTESMSLKHQMKSLQEEIDGLKDQLDTERKKKSELEAKLSELEGANVEYSRLIEEKDSHITYCETLLRESESETQQLQERASRSKEALSDVEKEREELKQKLDQVLMETQNQHLRMSAELEDLGQTKVNLEERLIELIRDKDALWQKSDALEFEQKLRAEEQWWLVDKEATHCLGCQGQFTWWLRRHHCRLCGRIFCYYCSNNYVMTKNSKKERCCRECYTQHGAVVERFTKAELNSSSDNQPSNTAAQLPPPPYIPTPRVTVTDPGERADDGAFDIITDEEVNQIYDSDSRTTNGSHEEEGGQTGDNSVSSDVTSEEQEDMISVQDAEITLLKSGELSASVPLDIDEIPHFGDGSRELFVKSSCYSTIPITVGDRGPIISWVFSSEPKSISFTVVYRETLDTPVEQAKVLIPLTRCNSHKETIQGQLKVRNAGVYTLIFDNSFSRFLSKKVNYHLTIEKPVIYDGSDFP"

     misc_feature    183..653
                     /gene="fyco1a"
                     /note="RUN domain found in FYVE and coiled-coil
                     domain-containing protein 1 (FYCO1) and similar proteins;
                     Region: RUN_FYCO1; cd17698"
                     /db_xref="CDD:439060"
     misc_feature    <891..1934
                     /gene="fyco1a"
                     /note="Chromosome segregation ATPase [Cell cycle control,
                     cell division, chromosome partitioning]; Region: Smc;
                     COG1196"
                     /db_xref="CDD:224117"
     misc_feature    1494..>3722
                     /gene="fyco1a"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    3726..3896
                     /gene="fyco1a"
                     /note="FYVE domain found in FYVE and coiled-coil
                     domain-containing protein 1 (FYCO1) and similar proteins;
                     Region: FYVE_FYCO1; cd15726"
                     /db_xref="CDD:277265"
     misc_feature    order(3726..3728,3735..3737,3789..3806,3810..3815,
                     3876..3884)
                     /gene="fyco1a"
                     /note="putative phosphatidylinositol 3-phosphate binding
                     site [chemical binding]; other site"
                     /db_xref="CDD:277265"
     misc_feature    <4449..4604
                     /gene="fyco1a"
                     /note="Golgi-dynamics membrane-trafficking; Region:
                     GOLD_2; pfam13897"
                     /db_xref="CDD:433565"
ORIGIN      

acactcctgagaagaagaagaaggcgaagacttcaatggcggagatgtctgtcaatcaaaaagtaggtcgtgccgtgatgtaaaggacaataacaacaaagcacaaaagtctaccgatgacctcttgacacctccagcaggaagctagtcagaccatggccactggtgctgcagtcggggacagtcagatccagaggattatcagagatctgcgcgatgctgtttccgaactgacaaaggagtataaagagagcggtgagcccattactgatgacagctccaatctgcacaagttctcctacaagctggagtatctgcttcagttcgaccaaaaggagaaaacaacatttctgggctccagaaaagactactgggattacttcagcgactgcctggccaaaatcaaaggagcaaatgatggaattcgcttcgttaaatcaatttcagagctgaagacgtctctgggcaagggcagagcatttatccgttactctctggtgcatcagcggctggcagacacactccagcagtgcctcatgaactccagagtcaccagtgactggtataatccgaggagtccgtttctcaaaccccatctcagcgtggacatcattagttatctctacgagctcaatgatgtccagtttgatgtggcatccagaggtcatgaccttgacgcagaatggcccacttttgccaggaggacattaggaatgactagctctcccagtcacttgtggaaagcaccgagtcgtagttccagcatcaacagtctggccagcacatactcacagcagcaccatgagttccctgggagtccagactttggacctgggcttttatcagatatgtctatgcaaaactccagcatactgaatgatacctcaatgagtgctatagacgaactccgtctggagcttgaccagtctgaattaaagcaaagagagcttattgaccggattcagcagttaggtgatgaggggagtgaactgcgtggagttgttgtggaactgcaaaggcagctagatgtttctttagcggcccaaggtaaccatcaggagctacaacgtaacctggaggtcttaattgagagcgaacatgcactctcccgtgaggtggaggtcttaagagatcgagaaaccaggagggaggtttcccataaagaccttcaggacatgctggcagcagcggagcgtaaaaacgaggagctgatgacaaggctagatggagtattggatgagaaaggtcaaagggcggccagtgatttcaactcagcccagaagattcacgagcttttgaatgaattaaaagaggctgagaagaagaggatggatgctctggctgaaggagaagagaagaggaggcatgctgaacatcttgccgaggaagtcaaagtgaaagatgaagctctcaaagaggctgaggtgaaaatggcagcttggatggagaagggtgaacaactgcaaaccagggcggtggagcagcgtaatttcatggagaaacttcaaggtgcacttgcagtaagagagaaagagaccagcaacctgcagaggcaactacgagatcttcagaactctctggagaacatggaaaagcaggccaatgtggagaagaagaggatgcaagatgataaagaagagcttgagatgaaaatgaatggtctagaggggctgttacaatcacttcggacacagttaaaggttaaagaatctgatcttctctccagtaccaagagagttcatttcctggagagggaatcagagaagcttaggagcgagaatcagaagttggagtatgagttggagaacagcaccaaaaaggaggccaagaagattgatgaatacaaggatagctgcgccaagcttattgagcaaaacactaagcttctgcagacggtgaataagaatgaagagagcaagaaagagttgcttgaaaacaaatcatccttggagagcgagttggcgggattgagggcctcagagaagcagttacgagctcaaatcgatgatgccaaagtgactgtggatgaacgagagcagcggctgagagaggagaacagaaatctggatgagagtctgcagaaggccaacatgcagctggaggaatccgagagctcaattcggcaaaaggagcaggagaacaaggacctcatggaggttcaggtcactcttaaatcagctctcgcagccatgcagaaagagatacgtgacataaacaaccagatcggtgaacttgagaagaatcttggagttgcgaggtgtaacgaagcaaatctgaacgcgcagcttaaagataaggccacccagctggaagatcgagagaagctctgtgaggagctccagggaagagtggaagaactggaaagtcggcagagggatttggaagtggagaagacaaaagcagaaagagcctttgttaaacaaacagagatgattcagagtcttgaagcacagagaaacctggcagagaagacacaacttgaaaaaagcacatgtcaagctaaagaaactaaagagatggccttaaaattgactcttctagaagatcaactgggattgagtgcgaaggaagtttctaagctacaagaggaagtggttaatctcagggctaaacttcacagtgctgtggaggagaaggacaagacgcaagcaaagcttgaggtcaccgaagcttcctgtgctgaactgcggatcttgactgagcacttgaagaagcaggccgaggagcagaatcggctgcatgtgagcgagctgctgcagtctagtgaacatgttgataaattaacttcgcagctgaaccaggagacctcagcgcatgagaaaaccactgcagcacttgcttccgctaaagaggatctagtggctctcaaggcccagaatgagcggatggtcctggagaatgcggaaaccagagagagtctccaccgggtcaacactgaaatggcagagttgggaatgactatttgcaagctcaccgccgagcgggaagaggcccgggaacgttgggccgctgaagctgtacgcatccaagaacttcagcagcacggagtgaaggagacagagcgactcaatgccagcttggtggctctgcatcaagaaaactccagtctgcaggaagagctccagcaaacagacaaactgtcagaaaccatgctggagctaaagcagctgctggacaaaactgagggcgaacgggacgctgcacgggaagagatcaccgctgtgaaattccagatgagcacagagagcatgtctctcaagcaccaaatgaagagtcttcaagaagagattgacggtttgaaagatcagctagacacagagaggaagaagaaatcagagctggaggccaaattatccgaactagagggagcgaatgtggaatactctcgtctgattgaggagaaggactcgcacattacttactgtgagactttgctgcgtgagagcgagtctgagacacagcaactgcaggaaagagcatcaagatccaaagaggctcttagtgatgtagagaaggagagggaagaattgaagcagaaattggatcaagtgttgatggagactcagaaccagcatctccgcatgtctgctgaactggaggacctgggacaaactaaagtcaacctggaggaacggctcattgaacttattagagataaggacgctctgtggcagaagtctgatgctctagagttcgagcagaagctaagagcagaggagcagtggtggctggtggataaagaggccacacactgtctgggctgccagggtcagttcacatggtggctgcggaggcatcactgcaggttgtgtggccgtatcttctgctactattgcagcaacaattacgtgatgaccaaaaactcaaagaaggagcgctgctgtcgagagtgttacacacaacacggcgctgtggtggagagattcaccaaagctgaactcaacagctcatcagacaaccagccatcaaacactgccgctcagctgccaccgcctccatatatacccacaccaagagttacagttacagatcctggtgagagggctgatgatggagcgtttgacattattacagacgaggaagtgaaccagatctatgacagcgactcgcgcaccaccaatggatcacatgaggaggaaggaggacaaaccggagataatagcgtatcaagtgacgtgacgtctgaagaacaggaagacatgatttcagtacaggatgcagaaatcaccctcctcaagtcaggagagctcagtgcctctgtgcctctggatatagatgagattcctcatttcggcgatggctcccgtgagctgtttgtcaagtccagttgttacagcaccattcccatcacagtgggcgaccgcggacccatcatcagctgggttttctcctccgagccaaagagcatctccttcactgtggtgtacagagagacacttgacacacctgtcgagcaggccaaggttctgattcccctcacgcgctgtaactcacacaaagagaccatacagggacaactcaaagtgcgcaacgctggagtctacacactcatcttcgataactcattctccagatttctctccaagaaggtcaactaccacctgaccattgagaagcccgtcatctacgatggaagtgacttcccttaatagcagtgttgtggtttgtagtgtctacagtttgtgtaaaactgactgttaagtattgactttatcattttaattcagacctgttcctgtgtaccaagggcttcggttttacacatttattttatattttaatgttttaccactgatagaatagctgtaatctgttgtgactggtgttatgaacgggtttctacagttgcatgaaagcagaatatttgctttttttgttgtgtgttttaatattattagtgtggttttagccgttttaaatgattacagacactacagat

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