GGRNA | Results

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Drosophila melanogaster Argonaute-1 (AGO1), transcript variant B, mRNA. (5738 bp)

CDD:462567" misc_feature 1226..1588 /gene="AGO1" /locus_tag="Dmel_CG6671" /gene_synonym="Ago; ago-1; Ago-1; AGO-1; ago1; Ago1; ago1-1; Agp1; anon-WO0257455.29; argonaute1; CG6671; dAgo1; dAGO1; Dm Ago1; dmAgo1; DmAgo1; Dmel\CG6671; l(2)04845; l(2)4845; l(2)k00208; l(2)k08121; MRE20" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...

Synonym: Ago; ago-1; Ago-1; AGO-1; ago1; Ago1; ago1-1; Agp1; anon-WO0257455.29; argonaute1; CG6671; dAgo1; dAGO1; Dm Ago1; dmAgo1; DmAgo1; Dmel\CG6671; l(2)04845; l(2)4845; l(2)k00208; l(2)k08121; MRE20
NM_079010.4 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase

Drosophila melanogaster Argonaute-1 (AGO1), transcript variant D, mRNA. (7888 bp)

CDD:462567" misc_feature 1354..1716 /gene="AGO1" /locus_tag="Dmel_CG6671" /gene_synonym="Ago; ago-1; Ago-1; AGO-1; ago1; Ago1; ago1-1; Agp1; anon-WO0257455.29; argonaute1; CG6671; dAgo1; dAGO1; Dm Ago1; dmAgo1; DmAgo1; Dmel\CG6671; l(2)04845; l(2)4845; l(2)k00208; l(2)k08121; MRE20" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...

Synonym: Ago; ago-1; Ago-1; AGO-1; ago1; Ago1; ago1-1; Agp1; anon-WO0257455.29; argonaute1; CG6671; dAgo1; dAGO1; Dm Ago1; dmAgo1; DmAgo1; Dmel\CG6671; l(2)04845; l(2)4845; l(2)k00208; l(2)k08121; MRE20
NM_001259385.1 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase

Drosophila melanogaster Argonaute-1 (AGO1), transcript variant A, mRNA. (3481 bp)

CDD:462567" misc_feature 1097..1459 /gene="AGO1" /locus_tag="Dmel_CG6671" /gene_synonym="Ago; ago-1; Ago-1; AGO-1; ago1; Ago1; ago1-1; Agp1; anon-WO0257455.29; argonaute1; CG6671; dAgo1; dAGO1; Dm Ago1; dmAgo1; DmAgo1; Dmel\CG6671; l(2)04845; l(2)4845; l(2)k00208; l(2)k08121; MRE20" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...

Synonym: Ago; ago-1; Ago-1; AGO-1; ago1; Ago1; ago1-1; Agp1; anon-WO0257455.29; argonaute1; CG6671; dAgo1; dAGO1; Dm Ago1; dmAgo1; DmAgo1; Dmel\CG6671; l(2)04845; l(2)4845; l(2)k00208; l(2)k08121; MRE20
NM_166020.2 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase

Drosophila melanogaster Argonaute-1 (AGO1), transcript variant C, mRNA. (7528 bp)

Synonym: Ago; ago-1; Ago-1; AGO-1; ago1; Ago1; ago1-1; Agp1; anon-WO0257455.29; argonaute1; CG6671; dAgo1; dAGO1; Dm Ago1; dmAgo1; DmAgo1; Dmel\CG6671; l(2)04845; l(2)4845; l(2)k00208; l(2)k08121; MRE20
NM_166021.2 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase

Drosophila melanogaster Dicer-1 (Dcr-1), mRNA. (6913 bp)

domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 3332..3697 /gene="Dcr-1" /locus_tag="Dmel_CG4792" /gene_synonym="cg4792; CG4792; Dcr; dcr 1; dcr-1; DCR-1; dcr1; Dcr1; DCR1; dicer; Dicer; DICER; dicer-1; DICER-1; dicer1; Dicer1; dmDcr1; Dmel\CG4792" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209" misc_...

Synonym: cg4792; CG4792; Dcr; dcr 1; dcr-1; DCR-1; dcr1; Dcr1; DCR1; dicer; Dicer; DICER; dicer-1; DICER-1; dicer1; Dicer1; dmDcr1; Dmel\CG4792
NM_079729.3 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase

Drosophila melanogaster aubergine (aub), transcript variant C, mRNA. (2808 bp)

misc_feature 908..1270 /gene="aub" /locus_tag="Dmel_CG6137" /gene_synonym="Aub; AUB; AUBERGINE; CG6137; Dmel\CG6137; ms(2)32D; sti; sting" /note="PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the...; Region: PAZ_piwi_like; cd02845" /db_xref="CDD:239211" misc_feature order(1058..1060,1097..1099,1118..1120,1130..1132, 1184..1186,1229..1231,1235..1237) /gene="aub" /locus_tag="Dmel_CG6137" /gene_...

Synonym: Aub; AUB; AUBERGINE; CG6137; Dmel\CG6137; ms(2)32D; sti; sting
NM_001103674.3 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase

Drosophila melanogaster aubergine (aub), transcript variant A, mRNA. (2825 bp)

misc_feature 925..1287 /gene="aub" /locus_tag="Dmel_CG6137" /gene_synonym="Aub; AUB; AUBERGINE; CG6137; Dmel\CG6137; ms(2)32D; sti; sting" /note="PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the...; Region: PAZ_piwi_like; cd02845" /db_xref="CDD:239211" misc_feature order(1075..1077,1114..1116,1135..1137,1147..1149, 1201..1203,1246..1248,1252..1254) /gene="aub" /locus_tag="Dmel_CG6137" /gene_...

Synonym: Aub; AUB; AUBERGINE; CG6137; Dmel\CG6137; ms(2)32D; sti; sting
NM_057386.5 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase

Drosophila melanogaster argonaute 2, transcript variant E (AGO2), mRNA. (3784 bp)

domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1632..1976 /gene="AGO2" /locus_tag="Dmel_CG7439" /gene_synonym="AG02; ago; AGO 2; ago-2; Ago-2; AGO-2; AGO1; ago2; Ago2; Ago2a; argonaute2; CG13452; CG7439; dAgo2; dAGO2; Dm Ago2; DmAgo2; Dmel\CG7439; eIF2C2" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cd02825" /db_xref="CDD:239207" misc_...

Synonym: AG02; ago; AGO 2; ago-2; Ago-2; AGO-2; AGO1; ago2; Ago2; Ago2a; argonaute2; CG13452; CG7439; dAgo2; dAGO2; Dm Ago2; DmAgo2; Dmel\CG7439; eIF2C2
NM_001274953.1 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase

Drosophila melanogaster argonaute 2, transcript variant B (AGO2), mRNA. (4050 bp)

domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1898..2242 /gene="AGO2" /locus_tag="Dmel_CG7439" /gene_synonym="AG02; ago; AGO 2; ago-2; Ago-2; AGO-2; AGO1; ago2; Ago2; Ago2a; argonaute2; CG13452; CG7439; dAgo2; dAGO2; Dm Ago2; DmAgo2; Dmel\CG7439; eIF2C2" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cd02825" /db_xref="CDD:239207" misc_...

Synonym: AG02; ago; AGO 2; ago-2; Ago-2; AGO-2; AGO1; ago2; Ago2; Ago2a; argonaute2; CG13452; CG7439; dAgo2; dAGO2; Dm Ago2; DmAgo2; Dmel\CG7439; eIF2C2
NM_140518.3 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase

Drosophila melanogaster argonaute 2, transcript variant C (AGO2), mRNA. (4117 bp)

domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1965..2309 /gene="AGO2" /locus_tag="Dmel_CG7439" /gene_synonym="AG02; ago; AGO 2; ago-2; Ago-2; AGO-2; AGO1; ago2; Ago2; Ago2a; argonaute2; CG13452; CG7439; dAgo2; dAGO2; Dm Ago2; DmAgo2; Dmel\CG7439; eIF2C2" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cd02825" /db_xref="CDD:239207" misc_...

Synonym: AG02; ago; AGO 2; ago-2; Ago-2; AGO-2; AGO1; ago2; Ago2; Ago2a; argonaute2; CG13452; CG7439; dAgo2; dAGO2; Dm Ago2; DmAgo2; Dmel\CG7439; eIF2C2
NM_168626.3 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase

Data Export:

Debug Info:

0.000 | 0.000 | search_start;
0.371 | 0.371 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Drosophila melanogaster (fruit fly)?to=0&format=json
0.408 | 0.037 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Drosophila melanogaster (fruit fly)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.409 | 0.001 | cgi_end;

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]

Summary:

Results:

Data Export:

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