GGRNA ver.2 Help | Advanced search | Japanese    Previous release (v1)

2024-04-27 11:34:33, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Homo sapiens cytochrome c oxidase subunit 7B, mitochondrial-like (LOC107985802), misc_RNA. (388 bp)
atggaaaaggaggaactaggtgttcgatcttcaccttcacgatgtttcgcttgctcaaaaaatgcagtaagtcatctccaagatcaaagcattcagcaaacaatggcaaggcagagccaccagaaaagtacacctgattttcatgacaatacgataatgctgtattagctagtggagccactttctgtattgctatatggacatatgtagcaacacaaatcagaatagaatggaacctgtgccctggtggcagagtcaccccaaaggaatggagagatcagtaatcatcccagctggtgtaataatgaattgtttaagaaacagctcataattgatgccaagttaaaacactgtgtacccattaagatatggcattattgaagaaata
position 281
XR_007071516.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens cytochrome c oxidase subunit 7B, mitochondrial-like (LOC107985802), misc_RNA. (397 bp)
atggaaaaggaggaactaggtgttcgatcttcaccttcacgatgtttcgcttgctcaaaaaatgcagtaagtcatctccaagatcaaagcattcagcaaacaatggcaaggcagagccaccagaaaagtacacctgattttcatgacaatacgataatgctgtattagctagtggagccactttctgtattgctatatggacatatgtagcaacacaaatcagaatagaatggaacctgtgccctggtggcagagtcaccccaaaggaatggagagatcagtaatcatcccagctggtgtaataatgaattgtttaagaaacagctcataattgatgccaagttaaaacactgtgtacccattaagatatggcattattgaagaaataaagtacatt
position 281
XR_007088647.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens cytochrome c oxidase subunit 7B (COX7B), mRNA; nuclear gene for mitochondrial product. (2444 bp)
ggcaccaaagcagcagctgtattgccgcagttctagcttcaccttcacgatgtttcccttggtcaaaagcgcactaaatcgtctccaagttcgaagcattcagcaaacaatggcaaggcagagccaccagaaacgtacacctgattttcatgacaaatacggtaatgctgtattagctagtggagccactttctgtattgttacatggacatatgtagcaacacaagtcggaatagaatggaacctgtcccctgttggcagagttaccccaaaggaatggaggaatcagtaatcatcccagctggtgtaataatgaattgtttaaaaaacagctcataattgatgccaaattaaagcactgtgtacccattaagatatggcattattgaagaaataaagtacatttgaaaccttcattgtaggttttgtttctttgtaaatgaaactaagcttgatcactttagcctttatgttaatattaaagtcaaatgctgtgcagcttcttaaataggtttttttttttttttttttttttttttgggacgaagtctcactttgtcccccaggctggagtgcagtggcaccatctcagctcactgc...
position 326
Synonym: APLCC; LSDMCA2
NM_001866.3 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)

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Debug Info:

Redirect URI : http://ggrna.dbcls.jp/hs/seq%3aGTAATCATCCCAGCTGGTGTAATAA
lang : en | div : | spe : hs | query_string : seq:GTAATCATCCCAGCTGGTGTAATAA | format : html | download :

0.000 | 0.000 | search_start;
0.085 | 0.085 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:GTAATCATCCCAGCTGGTGTAATAA)?source=Homo sapiens (human)?to=0&format=json
0.105 | 0.021 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:GTAATCATCCCAGCTGGTGTAATAA)?source=Homo sapiens (human)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.106 | 0.000 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]