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Previous release (v1)
2024-05-09 01:07:44, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XR_007088647 397 bp RNA linear PRI 05-OCT-2023
DEFINITION PREDICTED: Homo sapiens cytochrome c oxidase subunit 7B,
mitochondrial-like (LOC107985802), misc_RNA.
ACCESSION XR_007088647
VERSION XR_007088647.1
DBLINK BioProject: PRJNA168
KEYWORDS RefSeq; includes ab initio.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_000002.12) annotated using gene prediction method: Gnomon,
supported by mRNA evidence.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Updated annotation
Annotation Name :: GCF_000001405.40-RS_2023_10
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.2
Annotation Method :: Best-placed RefSeq; Gnomon;
RefSeqFE; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 10/02/2023
##Genome-Annotation-Data-END##
##RefSeq-Attributes-START##
ab initio :: 13% of CDS bases
##RefSeq-Attributes-END##
FEATURES Location/Qualifiers
source 1..397
/organism="Homo sapiens"
/mol_type="transcribed RNA"
/db_xref="taxon:9606"
/chromosome="2"
gene 1..397
/gene="LOC107985802"
/note="cytochrome c oxidase subunit 7B,
mitochondrial-like; Derived by automated computational
analysis using gene prediction method: Gnomon. Supporting
evidence includes similarity to: 1 mRNA, 3 Proteins, and
57% coverage of the annotated genomic feature by RNAseq
alignments"
/pseudo
/db_xref="GeneID:107985802"
misc_RNA 1..397
/gene="LOC107985802"
/product="cytochrome c oxidase subunit 7B,
mitochondrial-like"
/experiment="COORDINATES: polyA evidence [ECO:0006239]"
/pseudo
/db_xref="GeneID:107985802"
variation 2
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1296903752"
variation 8..14
/gene="LOC107985802"
/replace="aggagga"
/replace="aggaggagga"
/db_xref="dbSNP:1693647627"
variation 14
/gene="LOC107985802"
/replace="a"
/replace="c"
/db_xref="dbSNP:1693647600"
variation 16
/gene="LOC107985802"
/replace=""
/replace="c"
/db_xref="dbSNP:2149039508"
variation 16
/gene="LOC107985802"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:552952174"
variation 17
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:966096879"
variation 18
/gene="LOC107985802"
/replace=""
/replace="a"
/db_xref="dbSNP:540612234"
variation 18
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:1693647505"
variation 20
/gene="LOC107985802"
/replace="g"
/replace="t"
/db_xref="dbSNP:2149039504"
variation 27
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:1448768527"
variation 28
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:538120506"
variation 29
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:911166795"
variation 34
/gene="LOC107985802"
/replace="a"
/replace="c"
/db_xref="dbSNP:1693503929"
variation 36
/gene="LOC107985802"
/replace="g"
/replace="t"
/db_xref="dbSNP:2149036764"
variation 40
/gene="LOC107985802"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1573647245"
variation 41
/gene="LOC107985802"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:567419604"
variation 42
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:1693503802"
variation 47
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1693503773"
variation 49
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:774063761"
variation 53
/gene="LOC107985802"
/replace="c"
/replace="g"
/db_xref="dbSNP:1693503703"
variation 61
/gene="LOC107985802"
/replace="a"
/replace="c"
/db_xref="dbSNP:1693503667"
variation 63
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1403469161"
variation 66
/gene="LOC107985802"
/replace="a"
/replace="c"
/db_xref="dbSNP:1693503597"
variation 72
/gene="LOC107985802"
/replace="a"
/replace="t"
/db_xref="dbSNP:933832086"
variation 74
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:549270029"
variation 84
/gene="LOC107985802"
/replace="g"
/replace="t"
/db_xref="dbSNP:1693503507"
variation 85
/gene="LOC107985802"
/replace="c"
/replace="g"
/db_xref="dbSNP:923681810"
variation 95
/gene="LOC107985802"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:534135657"
variation 105
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:1693503397"
variation 121
/gene="LOC107985802"
/replace="c"
/replace="g"
/db_xref="dbSNP:1363893043"
variation 124
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:1226824014"
variation 127
/gene="LOC107985802"
/replace="a"
/replace="c"
/db_xref="dbSNP:967831682"
variation 131
/gene="LOC107985802"
/replace=""
/replace="c"
/db_xref="dbSNP:1693503259"
variation 133
/gene="LOC107985802"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:190486631"
variation 134
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:184769137"
variation 136
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:191088841"
variation 139
/gene="LOC107985802"
/replace="a"
/replace="t"
/db_xref="dbSNP:1693503097"
variation 148..149
/gene="LOC107985802"
/replace="aa"
/replace="aaa"
/db_xref="dbSNP:1233050820"
variation 152
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:186681869"
variation 153
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:1558852877"
variation 154
/gene="LOC107985802"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:990516738"
variation 159
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:1693502865"
variation 162
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:1209624645"
variation 163
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1247434784"
variation 164
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:2149036739"
variation 171
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:1463606398"
variation 177
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:1184704289"
variation 178
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1427256552"
variation 180..197
/gene="LOC107985802"
/replace="a"
/replace="actttctgtattgctata"
/db_xref="dbSNP:932489301"
variation 181
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:958927333"
variation 188
/gene="LOC107985802"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1485098700"
variation 191
/gene="LOC107985802"
/replace="a"
/replace="t"
/db_xref="dbSNP:1035030172"
variation 192
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:1693502519"
variation 193
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:979871997"
variation 194
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1003012910"
variation 194
/gene="LOC107985802"
/replace="t"
/replace="tt"
/db_xref="dbSNP:1693502455"
variation 196
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:948432394"
variation 205
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:1159460226"
variation 206
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1251123912"
variation 207
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:1573647190"
variation 208
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1573647186"
variation 209
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:1387188286"
variation 214
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1693502138"
variation 217
/gene="LOC107985802"
/replace="a"
/replace="c"
/db_xref="dbSNP:550869233"
variation 218
/gene="LOC107985802"
/replace="a"
/replace="c"
/db_xref="dbSNP:1225800537"
variation 219
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:989752822"
variation 221
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1573647181"
variation 222
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:955731382"
variation 223
/gene="LOC107985802"
/replace="c"
/replace="g"
/db_xref="dbSNP:1368971523"
variation 226
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1693501900"
variation 231
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:529508475"
variation 236
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1386741651"
variation 237
/gene="LOC107985802"
/replace="a"
/replace="c"
/db_xref="dbSNP:1025687688"
variation 241
/gene="LOC107985802"
/replace="c"
/replace="g"
/db_xref="dbSNP:1031201620"
variation 243
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1558852848"
variation 247
/gene="LOC107985802"
/replace="g"
/replace="t"
/db_xref="dbSNP:978785377"
variation 252..255
/gene="LOC107985802"
/replace="ag"
/replace="agag"
/db_xref="dbSNP:1693501635"
variation 254
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:1693501675"
variation 257
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:954899671"
variation 267
/gene="LOC107985802"
/replace="g"
/replace="t"
/db_xref="dbSNP:1693501132"
variation 270
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1693501110"
variation 274
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:1693501089"
variation 275
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:1267816618"
variation 276
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:1327148080"
variation 279
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1693501027"
variation 291
/gene="LOC107985802"
/replace="c"
/replace="g"
/db_xref="dbSNP:1324033817"
variation 299
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:994209345"
variation 304
/gene="LOC107985802"
/replace="a"
/replace="c"
/db_xref="dbSNP:1693500965"
variation 308..311
/gene="LOC107985802"
/replace=""
/replace="aatt"
/db_xref="dbSNP:1248354803"
variation 312
/gene="LOC107985802"
/replace="c"
/replace="g"
/db_xref="dbSNP:1488743069"
variation 313
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1190570043"
variation 318
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:898618915"
variation 319..321
/gene="LOC107985802"
/replace="aa"
/replace="aaa"
/db_xref="dbSNP:1573647156"
variation 321
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:2149036704"
variation 322
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1038321198"
variation 325
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1693500820"
variation 330
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:1693500803"
variation 335
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:1693500772"
variation 342
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:1558852831"
variation 350
/gene="LOC107985802"
/replace=""
/replace="a"
/db_xref="dbSNP:1030877976"
variation 351
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1473451662"
variation 353
/gene="LOC107985802"
/replace="c"
/replace="g"
/db_xref="dbSNP:1422074783"
variation 354
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1693500612"
variation 370
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1006864822"
variation 372
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:1398427365"
variation 373
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1693500522"
variation 376
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1693500491"
variation 378
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1166244670"
variation 387
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1693500417"
variation 389
/gene="LOC107985802"
/replace="a"
/replace="c"
/db_xref="dbSNP:112647042"
variation 390
/gene="LOC107985802"
/replace="a"
/replace="g"
/db_xref="dbSNP:373382201"
variation 394
/gene="LOC107985802"
/replace="c"
/replace="t"
/db_xref="dbSNP:1693500297"
ORIGIN
atggaaaaggaggaactaggtgttcgatcttcaccttcacgatgtttcgcttgctcaaaaaatgcagtaagtcatctccaagatcaaagcattcagcaaacaatggcaaggcagagccaccagaaaagtacacctgattttcatgacaatacgataatgctgtattagctagtggagccactttctgtattgctatatggacatatgtagcaacacaaatcagaatagaatggaacctgtgccctggtggcagagtcaccccaaaggaatggagagatcagtaatcatcccagctggtgtaataatgaattgtttaagaaacagctcataattgatgccaagttaaaacactgtgtacccattaagatatggcattattgaagaaataaagtacatt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]