GGRNA ver.2 Help | Advanced search | Japanese    Previous release (v1)

2026-01-17 12:51:01, GGRNA : RefSeq release 232 (Sep, 2025)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Rattus norvegicus Nedd4 family interacting protein 2 (Ndfip2), mRNA. (2110 bp)
aatttgtcagatttttaaatatgatattatttaggaaatctgtaaataaccatgcataagttgctctttacattcttttcttaaattgtgtctagatatcttttcattaattttaaattaagtaaactaaatacatagaaataaacttcattaaagatggagtggtttagggtgaactttaagaaagtatgagtataccaaatgctgtttaaagaacaagttagggccacaccagttttaggggttttcagatgagaaccttacattttaagattactcaccttacaattcttacaagaagagattgctttagaccttatatttattacatctaagacaatttaaaaaattaatttaccaaatatattctcatttgcatttgtctttccaaaagccaataaaagtatctttcagtattactgtaatcatttttttctttaaatgtttactctgttaagcttagcaaataaaatcttgttctgttaa
position 1919
NM_001108390.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus ATP binding cassette subfamily B member 7 (Abcb7), mRNA; nuclear gene for mitochondrial product. (2368 bp)
ttagattcgattactgaagagactattcttggtgccatgagggatgtggtgaagcacagaacttctattttcatcgcacatagattgtcaacagtggttgatgcagatgaaatcattgtcctgagccagggaaaagtagctgaacgtggtacccactatggtctgcttgctaactctagcagtatctattcagagatgtggcatacacagagcacccgcatacagaaccatgataaccttggatgggatgcaaagaaagagagtctctctaaagaggaggagagaaagaagctccaagaagagattgtcaacagcgtgaaaggctgtggaaattgctcctgctaaggaacacagacattttctcgtctttctttttgttgtcttgtttggttttgaaatatgcatttgcactgaagtaaaaccagttcacaaaaacacaaat
position 2221
NM_212518.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus valosin containing protein interacting protein 1 (Vcpip1), mRNA. (3864 bp)
aaggagaagaagattcgcataacaactaatgatggacggcagtccatggttacccttaagtcttcaacaaccttttttgaacttcaggaaagtatagccagagagttcaacattcctccatatttacagtgtattcgatatggttttcctcctaaagagttaatgccaccccaagcaggaatggaaaaggagccagttcctttgcagcatggtgacagaattaccatagagatcttaaaaggcaaagcagaaggtggtccatccactgctgcacactcagcccacactgtgagacaagaagagattgctgttactggcaagctgtcctccaaggaacttcaggagcaagctgacaaagaaatgtattccttgtgtcttttagcaacattaatgggagaagacgtgtggtcttatgcaaagggacttcctcacatgttccagcagggtggtgtattctacaatattatgaagaaaactatgggcatggctgatggcaaacattgtacttttccacatctacctggcaaaacctttgtttataatgcttctgaagacagactggagttgtgtgtcgatgccgcaggacatttccccattggt...
position 2725
Synonym: Vcip135
NM_176857.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus lysine-rich nucleolar protein 1 (Knop1), transcript variant 1, mRNA. (4997 bp)
ttgaagaaagggagtaagaagtcagtcagaagtgaagcgttggatttcatcccgatagacagcctgaaggcccctgggaagaagaaagtgaaatccaaaaaaaaggtggagcagccagttggtgaagggctggctgtgaaaaggaagaaaaagaagaggagaaaagagagcggagtaaaggaagacccctggcaggaggaaaaagaggagtcagacacagacttggaggtggtactggaaaaaaaaggcaatatggatgaggcctgcatagatcaggtgagacggaaggccttacaagaagagattgatcgtgagtctggcaagacagaggtttcagaacccaaaaaatggacgggaacccagtttggccagtgggacactgcgggctttgaaaatgaagaacagaaactaaaattcctgaaacttatgggcggctttaagcatctatccccgtcattcaaccgtcctcccagcatgactgtcaggtccaacatggccctggacaagaagtcttcagatacgctccagcagagtctgcagcaggactacgaccgggccatgagctggaagtacagccgaggggctggcctgggctttaac...
position 1085
Synonym: RGD1565096
NM_001399775.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus GRIP and coiled-coil domain containing 2 (Gcc2), transcript variant 2, mRNA. (6522 bp)
gcagtacactcagagcacagcaaagaaaaggctgccttacaaagagacctggagggagcagtccataggcaagcagagctgttagaacagctcaagtctcagagcgactctgaagataatgttaaaaaactacaggaagagattcagaacattacagcagcatttgaggaacaaacgtcatgtctacaaaagcaattagaagctaccagtgatgaaaaacagcaagagattattcatctccagaaagtcattgaggacaacgctcagcactaccaaaaagatattaatactttccaagaagagattgtgcagctgagagctacacacaaagaagaagttaatgagctgatgtctcaaatggaaacattagctaaagaacatgaggcagcagtaaataagctaaaagagaacagagtgacactgtgtgagacaagtgagaccattccagagaattaccaatgtgaatcagaaagcttaaatgaagacacctcagatgcaagccaggagaatcaaaaatgctctgtggccttacaggaagatccttttgcagaacatacagtgtatgataaagtcagacaattggaagattcattaaaagaa...
position 767
NM_001107633.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus GRIP and coiled-coil domain containing 2 (Gcc2), transcript variant 1, mRNA. (6528 bp)
gcagtacactcagagcacagcaaagaaaaggctgccttacaaagagacctggagggagcagtccataggcaagcagagctgttagaacagctcaagtctcagagcgactctgaagataatgttaaaaaactacaggaagagattcagaacattacagcagcatttgaggaacaaacgtcatgtctacaaaagcaattagaagctaccagtgatgaaaaacagcaagagattattcatctccagaaagtcattgaggacaacgctcagcactaccaaaaagatattaatactttccaagaagagattgtgcagctgagagctacacacaaagaagaagttaatgagctgatgtctcaaatggaaacattagctaaagaacatgaggcagcagtaaataagctaaaagagaacagagtgacactgtgtgagacaagtgagaccattccagagaattaccaatgtgaatcagaaagcttaaatgaagacacctcagatgcaagccaggagaatcaaaaatgctctgtggccttacaggaagatccttttgcagaacatacagtgtatgataaagtcagacaattggaagattcattaaaagaa...
position 773
NM_001434628.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : https://ggrna.dbcls.jp/en/rn/seq%3acaagaagagattg
lang : en | div : | spe : rn | query_string : seq:caagaagagattg | format : html | download : 

0.000 | 0.000 | search_start;
0.093 | 0.093 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caagaagagattg)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.163 | 0.069 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caagaagagattg)?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.163 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]