LOCUS       NM_001399775            4997 bp    mRNA    linear   ROD 12-JUN-2023
DEFINITION  Rattus norvegicus lysine-rich nucleolar protein 1 (Knop1),
            transcript variant 1, mRNA.
ACCESSION   NM_001399775
VERSION     NM_001399775.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4997)
  AUTHORS   Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein
            C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and
            Hentze MW.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000044.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR8487231.143133.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132293, SAMEA5760383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-62                JACYVU010000044.1  128449-128510       c
            63-997              JACYVU010000044.1  125352-126286       c
            998-1066            JACYVU010000044.1  123596-123664       c
            1067-1144           JACYVU010000044.1  121361-121438       c
            1145-4997           JACYVU010000044.1  109657-113509       c
FEATURES             Location/Qualifiers
     source          1..4997
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q35"
     gene            1..4997
                     /gene="Knop1"
                     /gene_synonym="RGD1565096"
                     /note="lysine-rich nucleolar protein 1"
                     /db_xref="GeneID:499255"
                     /db_xref="RGD:1565096"
     exon            1..62
                     /gene="Knop1"
                     /gene_synonym="RGD1565096"
                     /inference="alignment:Splign:2.1.0"
     exon            63..997
                     /gene="Knop1"
                     /gene_synonym="RGD1565096"
                     /inference="alignment:Splign:2.1.0"
     CDS             65..1456
                     /gene="Knop1"
                     /gene_synonym="RGD1565096"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="lysine-rich nucleolar protein 1 isoform 1"
                     /protein_id="NP_001386704.1"
                     /db_xref="GeneID:499255"
                     /db_xref="RGD:1565096"
                     /translation="

MVNKTQKEDLGPRLPEKKKKKKKKKKVANVSEPETQYSVLNNNDYFIDVSPPRATSPFNNVGEVQVPEMSLGKRKKKKKSCSTHLDEYLGKDEPTWTRQIKSPSPRRQVLEQSAEGLIREKKKKRRKSLSKVASQGSGLKTSPDSKHAKEVSKAGRKPKKHRKEKKLPDMEAFPPQDSWIPEAGDALHSCLEGAEAEEQAALGHKRKQGSPRDHSMKKKKKKKTHQEGDILPVNSKISMENSLKKGSKKSVRSEALDFIPIDSLKAPGKKKVKSKKKVEQPVGEGLAVKRKKKKRRKESGVKEDPWQEEKEESDTDLEVVLEKKGNMDEACIDQVRRKALQEEIDRESGKTEVSEPKKWTGTQFGQWDTAGFENEEQKLKFLKLMGGFKHLSPSFNRPPSMTVRSNMALDKKSSDTLQQSLQQDYDRAMSWKYSRGAGLGFNSEARKVFYIDRNASKSIKLQD"

     misc_feature    1163..1384
                     /gene="Knop1"
                     /gene_synonym="RGD1565096"
                     /note="Small acidic protein family; Region: SMAP;
                     pfam15477"
                     /db_xref="CDD:434743"
     exon            998..1066
                     /gene="Knop1"
                     /gene_synonym="RGD1565096"
                     /inference="alignment:Splign:2.1.0"
     exon            1067..1144
                     /gene="Knop1"
                     /gene_synonym="RGD1565096"
                     /inference="alignment:Splign:2.1.0"
     exon            1145..4997
                     /gene="Knop1"
                     /gene_synonym="RGD1565096"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gacttccgggtcgcggctgcgcgggtgctcacgtggggatgcttggcctgctaatagaccagtaatggtcaacaagactcagaaagaagacctgggcccacggctcccagagaagaagaaaaagaagaagaagaaaaagaaggtggcaaatgtctcagaaccagagactcagtactcagtcttaaacaataatgattacttcatagatgtttctcctccaagggctacatccccttttaacaatgtgggtgaggtgcaggtccctgagatgtcactgggcaagagaaagaagaaaaaaaagtcctgtagcacacacttggatgagtacctgggcaaggatgagcctacatggacaagacagataaagtcacctagccctagaaggcaggtccttgagcagtcagcagaaggcctcatcagagagaagaaaaagaagaggcggaagtccttatcaaaggttgcctcccaaggctcagggctgaagacttccccagactccaagcatgccaaggaggtaagcaaagctggtaggaagcctaaaaagcacaggaaggagaagaagcttccggacatggaagcttttcctccccaggactcttggatccctgaggctggggatgctttgcactcatgcttagagggggcagaggccgaagagcaggcggccttggggcacaaaaggaagcaggggagccccagagatcacagcatgaaaaagaagaagaagaaaaagactcatcaggagggagacatcctcccggtcaactccaagatctccatggagaacagcttgaagaaagggagtaagaagtcagtcagaagtgaagcgttggatttcatcccgatagacagcctgaaggcccctgggaagaagaaagtgaaatccaaaaaaaaggtggagcagccagttggtgaagggctggctgtgaaaaggaagaaaaagaagaggagaaaagagagcggagtaaaggaagacccctggcaggaggaaaaagaggagtcagacacagacttggaggtggtactggaaaaaaaaggcaatatggatgaggcctgcatagatcaggtgagacggaaggccttacaagaagagattgatcgtgagtctggcaagacagaggtttcagaacccaaaaaatggacgggaacccagtttggccagtgggacactgcgggctttgaaaatgaagaacagaaactaaaattcctgaaacttatgggcggctttaagcatctatccccgtcattcaaccgtcctcccagcatgactgtcaggtccaacatggccctggacaagaagtcttcagatacgctccagcagagtctgcagcaggactacgaccgggccatgagctggaagtacagccgaggggctggcctgggctttaactctgaggcccgcaaggtcttctacattgaccggaatgcctccaagtctatcaagttgcaagattaaattttattgtcctgttcttcaagctgcatttcttgctcagttttgcagttggcttgaactagtcatctgcagttattgaggaccagtatgaattgttaaagcctattttctgttaaacattccacctccttgggtgacagtattttaatagtagctagctgttgttgacatgtgaagggtcctgactaaaatgttttccttgcattgatatacttaaacctaattatggaatgggtgctattctcagctctatcaagttcagggataaagtaataaaacggcccagggtcaccttccgttaagtgccatgaagagtacatcacccagagatcagtgaagaaagcaagtgtcatgccatgacttccacgggaaccagcaagtttgttttccttctccctcatcaggaggcaggtgtggtgcagcaggcagctggctgagcttcccctctgcagccaacacacctctgagctggcctctctccagctgccgccatcctcccatctgactgctaagcttggacctgatgttgctgtgttggctgggtctcaaacaaggcattttggacagcaggtgatcctgcgtgtggacccatgacagattctcggcagcatgttctgtcttttgtgttcactagaccgaagacctcgtatacttatgtgatgaagtcaaatgtaggagtgaagaagatacttcatctgctgcaggcaccatactcacccctactaaaaatcacagcaatcttcatggagttccagatacagagatccacgtggcatgattttctcttccaccagcttttggcagtctggtatcaaggttcagataaggatattttcctatgtcttggcctgatctctcacgaacagaaacactggctggggctgggggtgtgatggagggagtcaggatgtttctccttctgaactaccatcaatgatggtatcctcacactgctaggaagatgagaggcaattccaggcattccagagataggagaaaactcttaaccaaagaaacttctggcagtccttcaggaagccttttatggcttcattcaactctgtagttgttctgtatcagcctccggggtaaggagatgcccctcaggccagccaaggagagggtgaggtgtgcagtactgccaaatgggcagcagaggtgatgctgtgcctgcggaaactgcctccacaccaccctgttccctgacctgtagacgtgggccatattgcaaagacctgtttaagccactttcctgggatgaacttggtccttcgtaaattcttcctcaagattcagaaaagaagaccacctctagtctcaggtggcagaattctgcatttgagtcaatgtctagacaaatctcccctggccttggtgaaccctgggaaccagctgggtaactccaacagttcgtgttccccagaggtcacactccagtctgagcatacctttgctcatcagaaagttgcacatggccatgtgatagatggtttcccatcttatgccacatacaccttggaaacttatcaaagtgtgagagccagatctttttcttagtgttacacagatttcagtgctaaaggacttgattttgtagcttggtacctcagcatagacttaggtgttccatttactcacccttctctctaagtaagaattgaagtttgtaagcaaagacagccatagggtcccctcaagagtgagttcagccttgtctcttgagagaagcacttaatgcccgtgcttctgttaaccaggctccagtcctacccctttttccatgtcttgtaccttccccagaaccctgcaaacttctgcctggtgtagtcctctccaaggtactgatcacctgatcagtgatccaacacagccttgaacttggctgttctctcaggcatttcttaccagcttggtgacactccgtagcaatatccttctccaacagtcaaatctcatggttccttccactttgttcttgagctgatttctgtgctgtatccactgggcccctgaggctaccttgtacaatcatactaacctgtcagaagtctctcctaatgagaagcagttgtcccctgctcttagtactacttggatcatggcaggcaggacacatggacacactcagcagaaggggaattaaaaatcactgaccacatgatttttattattatttttttttttttttttttttttacttttttggtttttcaagacagggtttctttgtgtacccctgaagaccatgctagccttaaaactcagatccacccatctctgcctccggagtgctgggattaaagttgtgcatcaccactgcatggcttcaagccaccactgactatcagatgaatttgaaataagatccttgattacctgagtaggttcttcataaaattccttaactggtaggtagcagaagagttagtgtagaagaggcttggaagacaccacagtcactggggaaggaaaaggccacaagccaagaacacaggcagccttcagaagccatgcagcatttctttccaccaagtgcccacaaaagaacttcgtcatggcaacaccttgacctagcccagagaagccagtgagttctgaccaacagctgtcagtaagaccacaggaagtcactgcttgaaatttgttacagcaacaaggaccaggaatgactgacagacaagcatcctgtttttcacttcctgaaagtctcttcacacatccttcccaacaccaacaggtgctgtttgtggaggtggattccgagactggcctgtcagtaacacttctggtcagcagattatttcaggagccctgtgctgtgtgtgcctaatgtgagctaagccgaggttaacacagaagcactgggaattctctaggtcaatgtaaagcactaatgctattcaacgtgggcagctttgaggcaagagaataacttacaaagaattatttgtgaatttgccagttatttttctaagaattaacaccataatgaaagtgacataagataattatagtggaaagttttgtgaaataaaggccacttgggagtatctgaacagcagcatagtgcattctgggttctggcatgtttgttcacagcagaggaaaggcattctttaatacctggtttttgtttttgagactagggctcatatatcccagattagcttcaaacatgtaactggggaccttgaacagatccaatcctgtctctacctcctaactactgggattatgggtctgtgtcatggcactgttttatatggggccttgtgtctgccaggcaagcattccactaactgagccatatccttagcctcagctattcagttttggttttgtttttaagaaattttattcagttccttgggctggagggtactgtcttcagattggtcccaaatgtatgtacagcaataaccttggtcttaaactaataaagacatgtacacataaatatatatgactttaacttctttctgaggttagtcatgtattgtgtttcagaatgaagataaataaaatcgatacctaaagcaca

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