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2024-04-25 03:41:43, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Danio rerio mesenchyme homeobox 2b (meox2b), mRNA. (870 bp)
LOCUS NM_001045124 870 bp mRNA linear VRT 09-APR-2020 DEFINITION Danio rerio mesenchyme homeobox 2b (meox2b), mRNA. ACCESSION NM_001045124 XM_690253 VERSION NM_001045124.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;...contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 529..687 /gene="meox2b" /gene_synonym="si:ch211-127c19.1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" exon 1..475 /gene="meox2b" /gene_synonym="si:ch211-127c19.1" /inference="alignment:Splign...
Synonym: si:ch211-127c19.1
NM_001045124.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio NK3 homeobox 3 (nkx3.3), mRNA. (1530 bp)
LOCUS NM_001013324 1530 bp mRNA linear VRT 31-MAY-2020 DEFINITION Danio rerio NK3 homeobox 3 (nkx3.3), mRNA. ACCESSION NM_001013324 XM_009307529 XM_696054 VERSION NM_001013324.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;...note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 557..718 /gene="nkx3.3" /gene_synonym="zgc:113257" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(557..559,566..568,686..688,695..700,707..709) /gene="nkx3.3" /gene_synonym...
Synonym: zgc:113257
NM_001013324.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio LIM homeobox 2a (lhx2a), mRNA. (1351 bp)
LOCUS NM_001159586 1351 bp mRNA linear VRT 09-APR-2020 DEFINITION Danio rerio LIM homeobox 2a (lhx2a), mRNA. ACCESSION NM_001159586 XM_001335385 VERSION NM_001159586.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;...contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 864..1022 /gene="lhx2a" /gene_synonym="si:dkey-261o10.1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" exon 276..460 /gene="lhx2a" /gene_synonym="si:dkey-261o10.1" /inference="alignment:Splign...
Synonym: si:dkey-261o10.1
NM_001159586.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio SIX homeobox 6a (six6a), mRNA. (1317 bp)
LOCUS NM_201105 1317 bp mRNA linear VRT 14-MAR-2021 DEFINITION Danio rerio SIX homeobox 6a (six6a), mRNA. ACCESSION NM_201105 VERSION NM_201105.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii;...PUBMED 26469318 REMARK Publication Status: Online-Only REFERENCE 6 (bases 1 to 1317) AUTHORS Ogawa Y, Shiraki T, Kojima D and Fukada Y. TITLE Homeobox transcription factor Six7 governs expression of green opsin genes in zebrafish JOURNAL Proc Biol Sci 282 (1812), 20150659 (2015) PUBMED 26180064...
Synonym: Six6; zgc:63871
NM_201105.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio caudal type homeobox 1a (cdx1a), mRNA. (2245 bp)
LOCUS NM_212836 2245 bp mRNA linear VRT 16-APR-2022 DEFINITION Danio rerio caudal type homeobox 1a (cdx1a), mRNA. ACCESSION NM_212836 VERSION NM_212836.3 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;...DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 402..560 /gene="cdx1a" /gene_synonym="cdx2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" exon 373..521 /gene="cdx1a" /gene_synonym="cdx2" /inference="alignment:Splign:2.1.0" exon...
Synonym: cdx2
NM_212836.3 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio ladybird homeobox 2 (lbx2), mRNA. (1764 bp)
2; homeobox; lbx; lbx1; lbx1h; SI:zC207O21.2; wu:fc26c12; zgc:92170" /note="propagated from UniProtKB/Swiss-Prot (Q804R0.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature order(688..702,706..708,757..759,775..777,814..816, 820..825,832..837,841..849,853..858) /gene="lbx2" /gene_synonym="fc26c12; homeobox; lbx; lbx1; lbx1h; SI:zC207O21.2; wu:fc26c12; zgc:92170" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 694..855 /gene="lbx2" /gene_synonym="fc26c12; homeobox; lbx; lbx1; lbx1h; SI:zC207O21.2; wu:fc26c12; zgc:92170" /note="Homeobox...
Synonym: fc26c12; homeobox; lbx; lbx1; lbx1h; SI:zC207O21.2; wu:fc26c12; zgc:92170
NM_001007134.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio muscle segment homeobox 3 (msx3), mRNA. (2029 bp)
gene="msx3" /gene_synonym="homeobox; msh-C; mshC; msx-c; msxc; zgc:86596" /note="propagated from UniProtKB/Swiss-Prot (Q01703.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature order(565..579,583..585,634..636,652..654,691..693, 697..702,709..714,718..726,730..735) /gene="msx3" /gene_synonym="homeobox; msh-C; mshC; msx-c; msxc; zgc:86596" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 571..732 /gene="msx3" /gene_synonym="homeobox; msh-C; mshC; msx-c; msxc; zgc:86596" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD...
Synonym: homeobox; msh-C; mshC; msx-c; msxc; zgc:86596
NM_131272.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio NK2 homeobox 4b (nkx2.4b), mRNA. (1175 bp)
LOCUS NM_131589 1175 bp mRNA linear VRT 20-FEB-2022 DEFINITION Danio rerio NK2 homeobox 4b (nkx2.4b), mRNA. ACCESSION NM_131589 VERSION NM_131589.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii;..." /db_xref="CDD:238039" misc_feature 482..643 /gene="nkx2.4b" /gene_synonym="nk2.1a; nkx2.1; nkx2.1a; nkx2.4a; titf1; titf1a" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(482..484,491..493,611..613,620..625,632..634) /gene="nkx2.4b" /gene_...
Synonym: nk2.1a; nkx2.1; nkx2.1a; nkx2.4a; titf1; titf1a
NM_131589.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio POU class 4 homeobox 4 (pou4f4), mRNA. (2330 bp)
LOCUS NM_001080058 2330 bp mRNA linear VRT 26-JUN-2021 DEFINITION Danio rerio POU class 4 homeobox 4 (pou4f4), mRNA. ACCESSION NM_001080058 XM_695754 VERSION NM_001080058.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;...note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 1009..1170 /gene="pou4f4" /gene_synonym="zgc:158291" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(1009..1011,1018..1020,1138..1140,1147..1152, 1159..1161) /gene="pou4f4" /...
Synonym: zgc:158291
NM_001080058.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio zinc fingers and homeoboxes 3b (zhx3b), mRNA. (3252 bp)
LOCUS NM_198813 3252 bp mRNA linear VRT 02-OCT-2022 DEFINITION Danio rerio zinc fingers and homeoboxes 3b (zhx3b), mRNA. ACCESSION NM_198813 VERSION NM_198813.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY311506.1. ##Evidence-Data-START## Transcript exon combination ::...
Synonym: tix1; zgc:110489; zhx3
NM_198813.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio homeobox C12a (hoxc12a), mRNA. (926 bp)
LOCUS NM_001110759 926 bp mRNA linear VRT 30-JAN-2022 DEFINITION Danio rerio homeobox C12a (hoxc12a), mRNA. ACCESSION NM_001110759 XM_685980 VERSION NM_001110759.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;...note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 651..812 /gene="hoxc12a" /gene_synonym="si:dkey-81p22.1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(651..653,660..662,780..782,789..794,801..803) /gene="hoxc12a" /gene_...
Synonym: si:dkey-81p22.1
NM_001110759.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio homeobox containing 1a (hmbox1a), mRNA. (1881 bp)
LOCUS NM_001030264 1881 bp mRNA linear VRT 02-OCT-2022 DEFINITION Danio rerio homeobox containing 1a (hmbox1a), mRNA. ACCESSION NM_001030264 XM_695104 VERSION NM_001030264.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC097126.1. On Aug 6, 2005 this sequence version...
Synonym: hmbox1; zgc:114064
NM_001030264.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio T cell leukemia homeobox 1 (tlx1), mRNA. (2223 bp)
LOCUS NM_170765 2223 bp mRNA linear VRT 24-JUL-2022 DEFINITION Danio rerio T cell leukemia homeobox 1 (tlx1), mRNA. ACCESSION NM_170765 VERSION NM_170765.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;...site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 647..808 /gene="tlx1" /gene_synonym="hox11; SI:dZ46P4.1; Tlx-1; ztlx-1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(647..649,656..658,776..778,785..790,797..799) /gene="tlx1" /gene_synonym...
Synonym: hox11; SI:dZ46P4.1; Tlx-1; ztlx-1
NM_170765.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio NK6 homeobox 1 (nkx6.1), mRNA. (2045 bp)
LOCUS NM_001002475 2045 bp mRNA linear VRT 20-FEB-2022 DEFINITION Danio rerio NK6 homeobox 1 (nkx6.1), mRNA. ACCESSION NM_001002475 VERSION NM_001002475.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;...note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 909..1070 /gene="nkx6.1" /gene_synonym="zgc:92879" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(909..911,918..920,1038..1040,1047..1052,1059..1061) /gene="nkx6.1" /gene_...
Synonym: zgc:92879
NM_001002475.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio prospero homeobox 3 (prox3), mRNA. (3558 bp)
LOCUS NM_001171587 3558 bp mRNA linear VRT 06-MAR-2022 DEFINITION Danio rerio prospero homeobox 3 (prox3), mRNA. ACCESSION NM_001171587 XM_687770 VERSION NM_001171587.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from FJ544314.1. On Apr 26, 2010 this sequence version replaced...
Synonym: prox1b
NM_001171587.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio PROP paired-like homeobox 1 (prop1), mRNA. (852 bp)
LOCUS NM_001177461 852 bp mRNA linear VRT 08-AUG-2023 DEFINITION Danio rerio PROP paired-like homeobox 1 (prop1), mRNA. ACCESSION NM_001177461 XM_001341349 VERSION NM_001177461.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;...note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 343..504 /gene="prop1" /gene_synonym="si:ch211-93n23.5" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(343..345,352..354,472..474,481..486,493..495) /gene="prop1" /gene_...
Synonym: si:ch211-93n23.5
NM_001177461.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio H6 family homeobox 1 (hmx1), mRNA. (849 bp)
LOCUS NM_001113526 849 bp mRNA linear VRT 05-AUG-2023 DEFINITION Danio rerio H6 family homeobox 1 (hmx1), mRNA. ACCESSION NM_001113526 XM_001334293 VERSION NM_001113526.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;..." /db_xref="CDD:238039" misc_feature 457..618 /gene="hmx1" /gene_synonym="im:7155045; Nkx5-3; nkx5.3; zgc:172164" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(457..459,466..468,586..588,595..600,607..609) /gene="hmx1" /gene_synonym...
Synonym: im:7155045; Nkx5-3; nkx5.3; zgc:172164
NM_001113526.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio posterior neuron-specific homeobox (pnx), mRNA. (867 bp)
gene="pnx" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 280..438 /gene="pnx" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN // REFERENCE 1 (bases 1 to 867) AUTHORS Wotton KR, Weierud FK, Juarez-Morales JL, Alvares LE, Dietrich S and Lewis KE. TITLE Conservation of gene linkage in dispersed vertebrate NK homeobox clusters JOURNAL Dev Genes Evol 219 (9-10), 481-496 (2009) PUBMED 20112453 REFERENCE 2 (bases 1 to 867) AUTHORS Bae YK, Shimizu T and Hibi M. TITLE Patterning of proneuronal and inter-...
NM_178302.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio H6 family homeobox 4 (hmx4), mRNA. (1446 bp)
LOCUS NM_001045371 1446 bp mRNA linear VRT 05-AUG-2023 DEFINITION Danio rerio H6 family homeobox 4 (hmx4), mRNA. ACCESSION NM_001045371 VERSION NM_001045371.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;...site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 420..581 /gene="hmx4" /gene_synonym="Hmx1; soho; wu:fc21b03; zgc:154104" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(420..422,429..431,549..551,558..563,570..572) /gene="hmx4" /gene_...
Synonym: Hmx1; soho; wu:fc21b03; zgc:154104
NM_001045371.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio LIM homeobox 4 (lhx4), mRNA. (1176 bp)
LOCUS NM_001122973 1176 bp mRNA linear VRT 09-OCT-2022 DEFINITION Danio rerio LIM homeobox 4 (lhx4), mRNA. ACCESSION NM_001122973 XM_695590 VERSION NM_001122973.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;...note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 487..648 /gene="lhx4" /gene_synonym="si:dkeyp-35f11.3" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(487..489,496..498,616..618,625..630,637..639) /gene="lhx4" /gene_...
Synonym: si:dkeyp-35f11.3
NM_001122973.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio mohawk homeobox b (mkxb), mRNA. (1224 bp)
gene="mkxb" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 384..531 /gene="mkxb" /inference="alignment:Splign:2.1.0" exon 532..685 /gene="mkxb" /inference="alignment:Splign:2.1.0" exon 686..1006 /gene="mkxb" /inference="alignment:Splign:2.1.0" exon 1007..1040 /gene="mkxb" /inference="alignment:Splign:2.1.0" exon 1041..1224 /gene="mkxb" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 1224) AUTHORS Adachi Y, Higuchi A, Wakai E, Shiromizu T, Koiwa J and Nishimura Y. TITLE Involvement of homeobox transcription factor Mohawk in...
NM_001114409.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio cone-rod homeobox (crx), mRNA. (2385 bp)
gene="crx" /codon_start=1 /product="cone-rod homeobox protein" /protein_id="NP_694419.1" /db_xref="GeneID:81881" /db_xref="ZFIN:ZDB-GENE-010403-1" /translation="MMSYIKQPHYAVNGLTLSASGMDLLHTAVGYPATPRKQRRERTTFTRTQLDILEALFTKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRTSGQPKPRPPKKKSSPPPDLTSDPGTSSSVVAAPTPTVPPSVSAGTAPVSVWSPTSLSPLPDPLCGSGTPCVQRPAPYPMSYGQPSSYSQGYGSSPYFSGLDCSPYLSPMTTQLSASGGALSPLTVPSMGGSLSQSPSLSSQGYSTASLGFSSVDCLDYKDQQAWKLNFSTVDCLDHKFQVL" misc_feature 522..701 /gene="crx" /note="Region: homeodomain" misc_feature 555..692 /gene="crx" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="...
NM_152940.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio HESX homeobox 1 (hesx1), mRNA. (717 bp)
="homeobox expressed in ES cells 1" /protein_id="NP_571424.1" /db_xref="GeneID:30620" /db_xref="ZFIN:ZDB-GENE-990415-130" /translation="MASLANSPSVFTIDSILGLDRPEQRTCPYRPWTDVKPACQNRRVVTESDAPVDVRENEDGKSFSKSPTDSYRRTLNWYIGRRPRTAFSSVQIKILESVFQVNSYPGIDIREELAKKLQLDEDRIQIWFQNRRAKLKRSHRESQFLMVKNVLNDLQIGREEH" misc_feature order(279..293,297..299,348..350,366..368,405..407, 411..416,423..428,432..440,444..449) /gene="hesx1" /gene_synonym="Anf; danf; zanf" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 285..446 /gene="hesx1" /gene_synonym="Anf; danf; zanf" /note="Homeobox...
Synonym: Anf; danf; zanf
NM_131349.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio dorsal root ganglia homeobox (drgx), mRNA. (864 bp)
LOCUS NM_001037105 864 bp mRNA linear VRT 09-JUL-2023 DEFINITION Danio rerio dorsal root ganglia homeobox (drgx), mRNA. ACCESSION NM_001037105 XM_683802 VERSION NM_001037105.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;...DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 136..294 /gene="drgx" /gene_synonym="prrxl1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature 619..672 /gene="drgx" /gene_synonym="prrxl1" /note="OAR domain; Region: OAR;...
Synonym: prrxl1
NM_001037105.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio ladybird homeobox 1b (lbx1b), mRNA. (1499 bp)
LOCUS NM_001163312 1499 bp mRNA linear VRT 29-MAY-2023 DEFINITION Danio rerio ladybird homeobox 1b (lbx1b), mRNA. ACCESSION NM_001163312 XM_001333611 VERSION NM_001163312.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;...note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 621..782 /gene="lbx1b" /gene_synonym="im:7139117; lbx1a" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(621..623,630..632,750..752,759..764,771..773) /gene="lbx1b" /gene_...
Synonym: im:7139117; lbx1a
NM_001163312.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio homeobox C6b (hoxc6b), transcript variant 1, mRNA. (1335 bp)
LOCUS NM_131530 1335 bp mRNA linear VRT 30-SEP-2023 DEFINITION Danio rerio homeobox C6b (hoxc6b), transcript variant 1, mRNA. ACCESSION NM_131530 VERSION NM_131530.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi...DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 465..623 /gene="hoxc6b" /gene_synonym="hoxy6" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature 648..731 /gene="hoxc6b" /gene_synonym="hoxy6" /note="propagated from UniProtKB/...
Synonym: hoxy6
NM_131530.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio SIX homeobox 9 (six9), mRNA. (794 bp)
LOCUS NM_001130608 794 bp mRNA linear VRT 13-MAR-2023 DEFINITION Danio rerio SIX homeobox 9 (six9), mRNA. ACCESSION NM_001130608 XM_684623 VERSION NM_001130608.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC163024.1. On May 28, 2009 this sequence version replaced XM...
Synonym: si:dkey-149j18.3
NM_001130608.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio engrailed homeobox 2b (en2b), mRNA. (1823 bp)
misc_feature 860..1021 /gene="en2b" /gene_synonym="en3; ENG-3; eng2b; eng3; ZF-EN-1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(860..862,869..871,989..991,998..1003,1010..1012) /gene="en2b" /gene_synonym="en3; ENG-3; eng2b; eng3; ZF-EN-1" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1025..1117 /gene="en2b" /gene_synonym="en3; ENG-3; eng2b; eng3; ZF-EN-1" /note="Engrailed homeobox C-terminal signature domain; Region: Engrail_1_C_sig; pfam10525" /db_xref="CDD:431338" exon 807..1819 /gene...
Synonym: en3; ENG-3; eng2b; eng3; ZF-EN-1
NM_131040.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio H6 family homeobox 2 (hmx2), mRNA. (957 bp)
LOCUS NM_001115098 957 bp mRNA linear VRT 16-OCT-2021 DEFINITION Danio rerio H6 family homeobox 2 (hmx2), mRNA. ACCESSION NM_001115098 XM_005158693 XM_678199 VERSION NM_001115098.3 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata...gene="hmx2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 589..750 /gene="hmx2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(589..591,598..600,718..720,727..732,739..741) /gene="hmx2" /note="specific DNA base...
NM_001115098.3 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio homeobox C6b (hoxc6b), transcript variant 2, mRNA. (1425 bp)
LOCUS NM_001328159 1425 bp mRNA linear VRT 30-SEP-2023 DEFINITION Danio rerio homeobox C6b (hoxc6b), transcript variant 2, mRNA. ACCESSION NM_001328159 VERSION NM_001328159.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;...DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 555..713 /gene="hoxc6b" /gene_synonym="hoxy6" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" exon 185..522 /gene="hoxc6b" /gene_synonym="hoxy6" /inference="alignment:Splign:2.1.0" exon...
Synonym: hoxy6
NM_001328159.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio developing brain homeobox 1b (dbx1b), mRNA. (1429 bp)
LOCUS NM_131178 1429 bp mRNA linear VRT 30-SEP-2023 DEFINITION Danio rerio developing brain homeobox 1b (dbx1b), mRNA. ACCESSION NM_131178 VERSION NM_131178.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;...note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 629..790 /gene="dbx1b" /gene_synonym="hlx2; sb:eu236" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(629..631,638..640,758..760,767..772,779..781) /gene="dbx1b" /gene_...
Synonym: hlx2; sb:eu236
NM_131178.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio brain-specific homeobox (bsx), mRNA. (848 bp)
LOCUS NM_214727 848 bp mRNA linear VRT 02-SEP-2023 DEFINITION Danio rerio brain-specific homeobox (bsx), mRNA. ACCESSION NM_214727 XM_687721 VERSION NM_214727.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;...gene="bsx" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 409..567 /gene="bsx" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature 553..765 /gene="bsx" /note="propagated from UniProtKB/Swiss-Prot (Q6R3Q6.1);...
NM_214727.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio distal-less homeobox 4a (dlx4a), mRNA. (1215 bp)
LOCUS NM_131300 1215 bp mRNA linear VRT 16-SEP-2023 DEFINITION Danio rerio distal-less homeobox 4a (dlx4a), mRNA. ACCESSION NM_131300 XM_005163982 VERSION NM_131300.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi...dlx8" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 570..731 /gene="dlx4a" /gene_synonym="DLX-8; dlx8" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(570..572,579..581,699..701,708..713,720..722) /gene="dlx4a" /gene_...
Synonym: DLX-8; dlx8
NM_131300.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio homeobox C5a (hoxc5a), mRNA. (1020 bp)
LOCUS NM_131144 1020 bp mRNA linear VRT 13-MAY-2023 DEFINITION Danio rerio homeobox C5a (hoxc5a), mRNA. ACCESSION NM_131144 VERSION NM_131144.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii;...site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 569..730 /gene="hoxc5a" /gene_synonym="hox-3.4; hoxc5; z-142; ZF-25" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(569..571,578..580,698..700,707..712,719..721) /gene="hoxc5a" /gene_synonym...
Synonym: hox-3.4; hoxc5; z-142; ZF-25
NM_131144.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio homeobox C13b (hoxc13b), mRNA. (1582 bp)
LOCUS NM_131546 1582 bp mRNA linear VRT 15-MAY-2023 DEFINITION Danio rerio homeobox C13b (hoxc13b), mRNA. ACCESSION NM_131546 VERSION NM_131546.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii;...hoxf13" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 741..902 /gene="hoxc13b" /gene_synonym="hoxf13" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(741..743,750..752,870..872,879..884,891..893) /gene="hoxc13b" /gene_...
Synonym: hoxf13
NM_131546.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio homeobox D10a (hoxd10a), mRNA. (1644 bp)
LOCUS NM_131166 1644 bp mRNA linear VRT 13-MAY-2023 DEFINITION Danio rerio homeobox D10a (hoxd10a), mRNA. ACCESSION NM_131166 VERSION NM_131166.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii;...site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 895..1056 /gene="hoxd10a" /gene_synonym="HOX-D10; hoxd-10; hoxd10; z-82" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(895..897,904..906,1024..1026,1033..1038,1045..1047) /gene="hoxd10a" /...
Synonym: HOX-D10; hoxd-10; hoxd10; z-82
NM_131166.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio NK3 homeobox 1 (nkx3-1), mRNA. (777 bp)
LOCUS NM_001386325 777 bp mRNA linear VRT 11-SEP-2023 DEFINITION Danio rerio NK3 homeobox 1 (nkx3-1), mRNA. ACCESSION NM_001386325 XM_677868 VERSION NM_001386325.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;...note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 301..462 /gene="nkx3-1" /gene_synonym="si:ch211-67o1.2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(301..303,310..312,430..432,439..444,451..453) /gene="nkx3-1" /gene_...
Synonym: si:ch211-67o1.2
NM_001386325.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio ladybird homeobox 1a (lbx1a), mRNA. (810 bp)
LOCUS NM_001025532 810 bp mRNA linear VRT 29-MAY-2023 DEFINITION Danio rerio ladybird homeobox 1a (lbx1a), mRNA. ACCESSION NM_001025532 XM_687459 VERSION NM_001025532.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;..." /db_xref="CDD:238039" misc_feature 382..543 /gene="lbx1a" /gene_synonym="dZ265N4.1; lbx1b; si:busm1-265n4.1; si:ch211-103o12.1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(382..384,391..393,511..513,520..525,532..534) /gene="lbx1a" /gene_...
Synonym: dZ265N4.1; lbx1b; si:busm1-265n4.1; si:ch211-103o12.1
NM_001025532.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio homeobox D13a (hoxd13a), mRNA. (1196 bp)
LOCUS NM_131169 1196 bp mRNA linear VRT 05-AUG-2023 DEFINITION Danio rerio homeobox D13a (hoxd13a), mRNA. ACCESSION NM_131169 VERSION NM_131169.3 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii;...site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 651..812 /gene="hoxd13a" /gene_synonym="hoxd-13; hoxd13; zgc:110511" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(651..653,660..662,780..782,789..794,801..803) /gene="hoxd13a" /gene_synonym...
Synonym: hoxd-13; hoxd13; zgc:110511
NM_131169.3 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio homeobox A11a (hoxa11a), mRNA. (948 bp)
LOCUS NM_131544 948 bp mRNA linear VRT 13-MAY-2023 DEFINITION Danio rerio homeobox A11a (hoxa11a), mRNA. ACCESSION NM_131544 VERSION NM_131544.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii;...eu415" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 736..897 /gene="hoxa11a" /gene_synonym="sb:eu415" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(736..738,745..747,865..867,874..879,886..888) /gene="hoxa11a" /gene_...
Synonym: sb:eu415
NM_131544.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio developing brain homeobox 1a (dbx1a), mRNA. (1453 bp)
LOCUS NM_131158 1453 bp mRNA linear VRT 30-SEP-2023 DEFINITION Danio rerio developing brain homeobox 1a (dbx1a), mRNA. ACCESSION NM_131158 VERSION NM_131158.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;..." /db_xref="CDD:238039" misc_feature 626..787 /gene="dbx1a" /gene_synonym="fc15c04; hlx-1; hlx1; wu:fc15c04; zgc:109861" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(626..628,635..637,755..757,764..769,776..778) /gene="dbx1a" /gene_synonym="...
Synonym: fc15c04; hlx-1; hlx1; wu:fc15c04; zgc:109861
NM_131158.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio POU class 4 homeobox 2 (pou4f2), mRNA. (1493 bp)
LOCUS NM_212807 1493 bp mRNA linear VRT 16-APR-2022 DEFINITION Danio rerio POU class 4 homeobox 2 (pou4f2), mRNA. ACCESSION NM_212807 VERSION NM_212807.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;...note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 1238..1399 /gene="pou4f2" /gene_synonym="brn-3b; brn3.2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(1238..1240,1247..1249,1367..1369,1376..1381, 1388..1390) /gene="...
Synonym: brn-3b; brn3.2
NM_212807.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio homeobox A2b (hoxa2b), mRNA. (1797 bp)
LOCUS NM_131106 1797 bp mRNA linear VRT 30-SEP-2023 DEFINITION Danio rerio homeobox A2b (hoxa2b), mRNA. ACCESSION NM_131106 VERSION NM_131106.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii;...base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 860..1018 /gene="hoxa2b" /gene_synonym="hoxa2; Z-75" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature 1007..1105 /gene="hoxa2b" /gene_synonym="hoxa2; Z-75" /note="propagated from...
Synonym: hoxa2; Z-75
NM_131106.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio iroquois homeobox 1b (irx1b), mRNA. (1764 bp)
LOCUS NM_131823 1764 bp mRNA linear VRT 29-MAY-2023 DEFINITION Danio rerio iroquois homeobox 1b (irx1b), mRNA. ACCESSION NM_131823 VERSION NM_131823.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii...factor [Transcription]; Region: COG5576" /db_xref="CDD:227863" misc_feature 532..648 /gene="irx1b" /gene_synonym="iro1; ziro1" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" misc_feature 985..1038 /gene="irx1b" /gene_synonym="iro1; ziro1" /note="Motif in Iroquois-...
Synonym: iro1; ziro1
NM_131823.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio caudal type homeobox 4 (cdx4), mRNA. (1653 bp)
LOCUS NM_131109 1653 bp mRNA linear VRT 16-AUG-2023 DEFINITION Danio rerio caudal type homeobox 4 (cdx4), mRNA. ACCESSION NM_131109 XM_001336183 XM_001336267 VERSION NM_131109.3 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;...misc_feature 663..821 /gene="cdx4" /gene_synonym="cad1; cb546; cdx1; CHUNP6923; id:ibd1215; id:ibd2812; id:ibd5107; kgg; kugelig" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" exon 637..782 /gene="cdx4" /gene_synonym="cad1; cb546; cdx1; CHUNP6923; id:ibd1215; id:...
Synonym: cad1; cb546; cdx1; CHUNP6923; id:ibd1215; id:ibd2812; id:ibd5107; kgg; kugelig
NM_131109.3 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio homeobox B8a (hoxb8a), mRNA. (1821 bp)
LOCUS NM_131120 1821 bp mRNA linear VRT 30-SEP-2023 DEFINITION Danio rerio homeobox B8a (hoxb8a), mRNA. ACCESSION NM_131120 VERSION NM_131120.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii;...other site" /db_xref="CDD:238039" misc_feature 822..980 /gene="hoxb8a" /gene_synonym="fj67g02; gp-8; hoxb8; wu:fj67g02; zgc:64159" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature 981..1112 /gene="hoxb8a" /gene_synonym="fj67g02; gp-8; hoxb8; wu:fj67g02; zgc...
Synonym: fj67g02; gp-8; hoxb8; wu:fj67g02; zgc:64159
NM_131120.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio homeobox C1a (hoxc1a), mRNA. (909 bp)
LOCUS NM_131531 909 bp mRNA linear VRT 29-MAY-2023 DEFINITION Danio rerio homeobox C1a (hoxc1a), mRNA. ACCESSION NM_131531 VERSION NM_131531.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii;...Prot (Q98SH9.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 652..816 /gene="hoxc1a" /gene_synonym="z-42" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:395001" misc_feature order...
Synonym: z-42
NM_131531.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio homeobox A10b (hoxa10b), mRNA. (1760 bp)
LOCUS NM_131155 1760 bp mRNA linear VRT 15-MAY-2023 DEFINITION Danio rerio homeobox A10b (hoxa10b), mRNA. ACCESSION NM_131155 VERSION NM_131155.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii;...binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 924..1085 /gene="hoxa10b" /gene_synonym="Hoxa-10; hoxa10; z-140" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(924..926,933..935,1053..1055,1062..1067,1074..1076) /gene="hoxa10b" /...
Synonym: Hoxa-10; hoxa10; z-140
NM_131155.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio paired like homeobox 2Bb (phox2bb), mRNA. (2164 bp)
LOCUS NM_001014818 2164 bp mRNA linear VRT 21-AUG-2023 DEFINITION Danio rerio paired like homeobox 2Bb (phox2bb), mRNA. ACCESSION NM_001014818 XM_696677 VERSION NM_001014818.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;...DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 530..688 /gene="phox2bb" /gene_synonym="phox2b" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN // REFERENCE 1 (bases 1 to 2164) AUTHORS MacLean JE, Wertman JN, Prykhozhij SV,...
Synonym: phox2b
NM_001014818.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio NK3 homeobox 2 (nkx3-2), mRNA. (1357 bp)
LOCUS NM_178132 1357 bp mRNA linear VRT 11-SEP-2023 DEFINITION Danio rerio NK3 homeobox 2 (nkx3-2), mRNA. ACCESSION NM_178132 VERSION NM_178132.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii;...note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 489..650 /gene="nkx3-2" /gene_synonym="bapx1; nkx3.2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(489..491,498..500,618..620,627..632,639..641) /gene="nkx3-2" /gene_...
Synonym: bapx1; nkx3.2
NM_178132.2 - Danio rerio (zebrafish) - NCBI - UCSC

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Redirect URI : http://ggrna.dbcls.jp/dr/homeobox
lang : en | div : | spe : dr | query_string : homeobox | format : html | download : 

0.000 | 0.000 | search_start;
0.081 | 0.081 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:homeobox)%7C(nt:homeobox)%7C(aa:homeobox))?source=Danio rerio (zebrafish)?to=0&format=json
0.148 | 0.067 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:homeobox)%7C(nt:homeobox)%7C(aa:homeobox))?source=Danio rerio (zebrafish)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.154 | 0.006 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]