2024-05-06 12:16:30, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_131272 2029 bp mRNA linear VRT 27-AUG-2023 DEFINITION Danio rerio muscle segment homeobox 3 (msx3), mRNA. ACCESSION NM_131272 VERSION NM_131272.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 2029) AUTHORS Sinclair JW, Hoying DR, Bresciani E, Nogare DD, Needle CD, Berger A, Wu W, Bishop K, Elkahloun AG, Chitnis A, Liu P and Burgess SM. TITLE The Warburg effect is necessary to promote glycosylation in the blastema during zebrafish tail regeneration JOURNAL NPJ Regen Med 6 (1), 55 (2021) PUBMED 34518542 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2029) AUTHORS Tseng WC, Johnson Escauriza AJ, Tsai-Morris CH, Feldman B, Dale RK, Wassif CA and Porter FD. TITLE The role of Niemann-Pick type C2 in zebrafish embryonic development JOURNAL Development 148 (7) (2021) PUBMED 33722902 REFERENCE 3 (bases 1 to 2029) AUTHORS Cheng X, Zhang JJ and Shi DL. TITLE Loss of Rbm24a causes defective hair cell development in the zebrafish inner ear and neuromasts JOURNAL J Genet Genomics 47 (7), 403-406 (2020) PUBMED 33036919 REFERENCE 4 (bases 1 to 2029) AUTHORS Kroll-Hermi A, Ebstein F, Stoetzel C, Geoffroy V, Schaefer E, Scheidecker S, Bar S, Takamiya M, Kawakami K, Zieba BA, Studer F, Pelletier V, Eyermann C, Speeg-Schatz C, Laugel V, Lipsker D, Sandron F, McGinn S, Boland A, Deleuze JF, Kuhn L, Chicher J, Hammann P, Friant S, Etard C, Kruger E, Muller J, Strahle U and Dollfus H. TITLE Proteasome subunit PSMC3 variants cause neurosensory syndrome combining deafness and cataract due to proteotoxic stress JOURNAL EMBO Mol Med 12 (7), e11861 (2020) PUBMED 32500975 REFERENCE 5 (bases 1 to 2029) AUTHORS Hodkovicova N, Sehonova P, Blahova J, Faldyna M, Marsalek P, Mikula P, Chloupek P, Dobsikova R, Vecerek V, Vicenova M, Vosmerova P and Svobodova Z. TITLE The effect of the antidepressant venlafaxine on gene expression of biotransformation enzymes in zebrafish (Danio rerio) embryos JOURNAL Environ Sci Pollut Res Int 27 (2), 1686-1696 (2020) PUBMED 31755053 REFERENCE 6 (bases 1 to 2029) AUTHORS Ekker M, Akimenko MA, Allende ML, Smith R, Drouin G, Langille RM, Weinberg ES and Westerfield M. TITLE Relationships among msx gene structure and function in zebrafish and other vertebrates JOURNAL Mol Biol Evol 14 (10), 1008-1022 (1997) PUBMED 9335141 REFERENCE 7 (bases 1 to 2029) AUTHORS Riley BB and Grunwald DJ. TITLE A mutation in zebrafish affecting a localized cellular function required for normal ear development JOURNAL Dev Biol 179 (2), 427-435 (1996) PUBMED 8903357 REFERENCE 8 (bases 1 to 2029) AUTHORS Hyatt GA, Schmitt EA, Marsh-Armstrong N, McCaffery P, Drager UC and Dowling JE. TITLE Retinoic acid establishes ventral retinal characteristics JOURNAL Development 122 (1), 195-204 (1996) PUBMED 8565830 REFERENCE 9 (bases 1 to 2029) AUTHORS Macdonald R, Barth KA, Xu Q, Holder N, Mikkola I and Wilson SW. TITLE Midline signalling is required for Pax gene regulation and patterning of the eyes JOURNAL Development 121 (10), 3267-3278 (1995) PUBMED 7588061 REFERENCE 10 (bases 1 to 2029) AUTHORS Akimenko MA, Johnson SL, Westerfield M and Ekker M. TITLE Differential induction of four msx homeobox genes during fin development and regeneration in zebrafish JOURNAL Development 121 (2), 347-357 (1995) PUBMED 7768177 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL831745.3, EH593082.1, DT069743.1 and EH607545.1. On Aug 18, 2015 this sequence version replaced NM_131272.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: GFIL01027003.1, BC071302.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-43 AL831745.3 96015-96057 44-925 EH593082.1 49-930 926-1334 DT069743.1 224-632 1335-2026 EH607545.1 1-692 c 2027-2029 AL831745.3 98444-98446 FEATURES Location/Qualifiers source 1..2029 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="13" /map="13" gene 1..2029 /gene="msx3" /gene_synonym="homeobox; msh-C; mshC; msx-c; msxc; zgc:86596" /note="muscle segment homeobox 3" /db_xref="GeneID:30526" /db_xref="ZFIN:ZDB-GENE-980526-306" exon 1..517 /gene="msx3" /gene_synonym="homeobox; msh-C; mshC; msx-c; msxc; zgc:86596" /inference="alignment:Splign:2.1.0" CDS 112..933 /gene="msx3" /gene_synonym="homeobox; msh-C; mshC; msx-c; msxc; zgc:86596" /note="etID309953.13; muscle segment homeobox C" /codon_start=1 /product="homeobox protein MSH-C" /protein_id="NP_571347.2" /db_xref="GeneID:30526" /db_xref="ZFIN:ZDB-GENE-980526-306" /translation="
MAPLSSMMNSEGPLSQEGKLQERKSADKEDAQSNDKAAVKGCKGKALSLPFSVESLISDRTSSRTLYTSSEAGIISPTSGADERLKLSPMALYADRKIPVESVSNLSDCKRGDMEELSDKGQSGWFQTTSYTSPPRHSSPPPCTLRKHKNNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSNSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKLATKPLLPAFAFPFPLGTHVGSPPLYGPSSSFPRPALPVPGLFGGPVTYGMYYLS"
misc_feature 451..588 /gene="msx3" /gene_synonym="homeobox; msh-C; mshC; msx-c; msxc; zgc:86596" /note="propagated from UniProtKB/Swiss-Prot (Q01703.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature order(565..579,583..585,634..636,652..654,691..693, 697..702,709..714,718..726,730..735) /gene="msx3" /gene_synonym="homeobox; msh-C; mshC; msx-c; msxc; zgc:86596" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 571..732 /gene="msx3" /gene_synonym="homeobox; msh-C; mshC; msx-c; msxc; zgc:86596" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(571..573,580..582,700..702,709..714,721..723) /gene="msx3" /gene_synonym="homeobox; msh-C; mshC; msx-c; msxc; zgc:86596" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 518..2029 /gene="msx3" /gene_synonym="homeobox; msh-C; mshC; msx-c; msxc; zgc:86596" /inference="alignment:Splign:2.1.0" ORIGIN
gcgagtgcgctctgcttggagagcgaggcaagcgtcgcaaaagcgcgacggcagaagggaagcgctgctggaccagagtacagttcaggacgactcacatattcttgttgtatggcccctttatcatctatgatgaattctgaagggccactctcccaagaaggaaaactacaggagcgcaaaagcgcggacaaagaggatgctcaatccaacgataaagcggctgtcaaaggatgtaaaggcaaagcgctgagtctcccgttcagtgtggaatctttaatatcagacagaacaagctcacggactttatacacgtcttctgaagctggtattatatctccgacatccggtgcggatgagcggctgaagctctcgcccatggctctttacgcagataggaagatcccagtggagagcgtctccaacctctccgactgcaagagaggggatatggaagaactaagtgacaagggacagtccggctggtttcagacaacctcgtacacttctccgccaaggcattcaagtccacccccctgtaccctcagaaagcacaagaacaaccgaaaaccgcggaccccgtttaccacctcgcagttgctcgctttggagagaaaatttcgtcaaaaacagtatctttctattgcagagagagcggaattttccaattcactcaacctcacagagactcaagttaaaatctggtttcaaaacagacgggcgaaggcaaaaagactccaggaggccgaactagagaaactgaaacttgcaaccaagccgttattacctgcgttcgcctttccgttcccactcggaacacatgttggttctccaccactctacggaccgtccagctcctttcccagacctgccttaccagtcccgggacttttcggtgggccagtgacctacggaatgtattatttgtcttaacagactgaagcacgtccttcaattcaccgtctgtaactgctgcaattctgccagtcaaaagacgtgtgaaattgcaaatatgtttcctttatagaacttaagcaaatgcaaaaatttaaaataaattatttttgtaatccacacggtttattccaaaagtaatagtacccaaattggttttaaaagtgcaatgaatattccccttaatacagaagactttatgctgtattatacaagtatagcctacagacacaccgctatgtgaataattgtcttagtctcagagaaaatatttccagtagattatttcaagggcacagccgatctagaaagtttctagagcagcatcatttgttgatgtgtgatgcgaaaataaactcctggtttgtgccagttccaaaaagctcttaaagaagaccttataattactatttttttttaaattaaagtgcttgtttcgactggcagcagaataggcctataccgtaaaaataaaagttttactgtgtcattgctactttccataggtctgccctaattggggcctaaatggattgtaagagccttttttaaattaatccatgtattttcactcaaaccaaatattttgtagaatattacaaagattgtgctcagatatcaaaattagcaaattctctactgccaatctggttacttgtttttatttctgcccgctattagtttcagatattcgatttgttatttggttggtctttattgaatatgatcaacgagaaacagcatcttcaattactctatactttttcttcccaaaccttttgggacacagagtattttggcctgtgttttttgattttcgcctgtttagccataatcccttcagtagactacatgtatgctagtttgctaggttgtaagaataatgtctagatttttttattattgtaaatacacgtatatattacagattttgcattccctttgaacaaaaatacaaacagaattgctgatatttatacactgtttacatttatcttctgtaaattattgtatattttatatgtatatacaaattagaaataatcttttgcattaaaataaatcttcacagaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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