GGRNA | Results

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Xenopus tropicalis testis and ovary specific PAZ domain containing 1 (topaz1), mRNA. (6628 bp)

LOCUS NM_001374744 6628 bp mRNA linear VRT 10-OCT-2019 DEFINITION Xenopus tropicalis testis and ovary specific PAZ domain containing 1 (topaz1), mRNA. ACCESSION NM_001374744 XM_012964409 VERSION NM_001374744.1 KEYWORDS RefSeq. SOURCE Xenopus tropicalis (tropical clawed frog) ORGANISM Xenopus tropicalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...

Synonym: c3orf77
NM_001374744.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis testis and ovary specific PAZ domain containing 1 (topaz1), transcript variant X3, mRNA. (2801 bp)

LOCUS XM_031903276 2801 bp mRNA linear VRT 18-DEC-2019 DEFINITION PREDICTED: Xenopus tropicalis testis and ovary specific PAZ domain containing 1 (topaz1), transcript variant X3, mRNA. ACCESSION XM_031903276 VERSION XM_031903276.1 DBLINK BioProject: PRJNA205740 KEYWORDS RefSeq. SOURCE Xenopus tropicalis (tropical clawed frog) ORGANISM Xenopus tropicalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is...

Synonym: c3orf77
XM_031903276.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis testis and ovary specific PAZ domain containing 1 (topaz1), transcript variant X2, mRNA. (2804 bp)

LOCUS XM_031903275 2804 bp mRNA linear VRT 18-DEC-2019 DEFINITION PREDICTED: Xenopus tropicalis testis and ovary specific PAZ domain containing 1 (topaz1), transcript variant X2, mRNA. ACCESSION XM_031903275 VERSION XM_031903275.1 DBLINK BioProject: PRJNA205740 KEYWORDS RefSeq. SOURCE Xenopus tropicalis (tropical clawed frog) ORGANISM Xenopus tropicalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is...

Synonym: c3orf77
XM_031903275.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis testis and ovary specific PAZ domain containing 1 (topaz1), transcript variant X1, mRNA. (2813 bp)

LOCUS XM_018094575 2813 bp mRNA linear VRT 18-DEC-2019 DEFINITION PREDICTED: Xenopus tropicalis testis and ovary specific PAZ domain containing 1 (topaz1), transcript variant X1, mRNA. ACCESSION XM_018094575 VERSION XM_018094575.2 DBLINK BioProject: PRJNA205740 KEYWORDS RefSeq. SOURCE Xenopus tropicalis (tropical clawed frog) ORGANISM Xenopus tropicalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is...

Synonym: c3orf77
XM_018094575.2 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X8, mRNA. (6515 bp)

misc_feature 145..534 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 565..717 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 718..1080 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...

XM_004911574.4 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X7, mRNA. (6521 bp)

XM_012957371.3 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X6, mRNA. (6527 bp)

misc_feature 151..540 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 571..723 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 724..1086 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...

XM_012957370.3 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 3, RISC catalytic component (ago3), transcript variant X2, mRNA. (5898 bp)

misc_feature 1162..1446 /gene="ago3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 1474..1626 /gene="ago3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1627..1989 /gene="ago3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...

XM_002936224.5 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 3, RISC catalytic component (ago3), transcript variant X1, mRNA. (5902 bp)

misc_feature 1163..1447 /gene="ago3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 1475..1627 /gene="ago3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1628..1990 /gene="ago3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...

XM_004911571.4 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X4, mRNA. (6587 bp)

misc_feature 217..606 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 637..789 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 790..1152 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...

XM_002938838.5 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X3, mRNA. (6594 bp)

misc_feature 218..607 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 638..790 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 791..1153 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...

XM_012957367.3 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X2, mRNA. (6600 bp)

misc_feature 230..619 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 650..802 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 803..1165 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...

XM_004911573.4 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X1, mRNA. (6607 bp)

misc_feature 231..620 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 651..803 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 804..1166 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...

XM_004911572.4 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 2, RISC catalytic component (ago2), transcript variant X1, mRNA. (5660 bp)

of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 842..994 /gene="ago2" /gene_synonym="Argonaute2; eif2c2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 995..1357 /gene="ago2" /gene_synonym="Argonaute2; eif2c2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...

Synonym: Argonaute2; eif2c2
XM_012964517.3 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

Xenopus tropicalis argonaute 2, RISC catalytic component (ago2), mRNA. (3687 bp)

of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 773..925 /gene="ago2" /gene_synonym="Argonaute2; eif2c2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 926..1288 /gene="ago2" /gene_synonym="Argonaute2; eif2c2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...

Synonym: Argonaute2; eif2c2
NM_001004877.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

Xenopus tropicalis argonaute 1, RISC catalytic component (ago1), mRNA. (7044 bp)

Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 632..784 /gene="ago1" /gene_synonym="eif2c; eif2c1; gerp95" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 785..1147 /gene="ago1" /gene_synonym="eif2c; eif2c1; gerp95" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...

Synonym: eif2c; eif2c1; gerp95
NM_001317215.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis dicer 1, ribonuclease III (dicer1), transcript variant X2, mRNA. (6344 bp)

; other site" /db_xref="CDD:350189" misc_feature 2136..2402 /gene="dicer1" /gene_synonym="dcr1; dicer; herna" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 2904..3272 /gene="dicer1" /gene_synonym="dcr1; dicer; herna" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209"...

Synonym: dcr1; dicer; herna
XM_031890235.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis dicer 1, ribonuclease III (dicer1), transcript variant X1, mRNA. (12229 bp)

; other site" /db_xref="CDD:350189" misc_feature 2222..2488 /gene="dicer1" /gene_synonym="dcr1; dicer; herna" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 2990..3358 /gene="dicer1" /gene_synonym="dcr1; dicer; herna" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209"...

Synonym: dcr1; dicer; herna
XM_031890234.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

Xenopus tropicalis testis and ovary specific TOPAZ 1 (topaz1), transcript variant 1, mRNA. (2850 bp)

gene_synonym="c3orf77" /inference="alignment:Splign:2.1.0" misc_feature 153..155 /gene="topaz1" /gene_synonym="c3orf77" /note="upstream in-frame stop codon" CDS 189..2678 /gene="topaz1" /gene_synonym="c3orf77" /note="isoform 1 is encoded by transcript variant 1; testis and ovary specific PAZ domain containing 1" /codon_start=1 /product="protein TOPAZ1 isoform 1" /protein_id="NP_001186868.1" /db_xref="GeneID:100380130" /db_xref="Xenbase:XB-GENE-5887135" /translation="...

Synonym: c3orf77
NM_001199939.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis piwi-like RNA-mediated gene silencing 1 (piwil1), transcript variant X2, mRNA. (4136 bp)

misc_feature 249..524 /gene="piwil1" /note="GAGE protein; Region: GAGE; pfam05831" /db_xref="CDD:461753" misc_feature 1029..1382 /gene="piwil1" /note="PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the...; Region: PAZ_piwi_like; cd02845" /db_xref="CDD:239211" misc_feature order(1164..1166,1203..1205,1227..1229,1239..1241, 1293..1295,1341..1343,1347..1349) /gene="piwil1" /note="nucleic acid-...

XM_018090379.2 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis piwi-like RNA-mediated gene silencing 1 (piwil1), transcript variant X1, mRNA. (4261 bp)

misc_feature 248..523 /gene="piwil1" /note="GAGE protein; Region: GAGE; pfam05831" /db_xref="CDD:461753" misc_feature 1028..1381 /gene="piwil1" /note="PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the...; Region: PAZ_piwi_like; cd02845" /db_xref="CDD:239211" misc_feature order(1163..1165,1202..1204,1226..1228,1238..1240, 1292..1294,1340..1342,1346..1348) /gene="piwil1" /note="nucleic acid-...

XM_002940181.4 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

Xenopus tropicalis dicer 1, ribonuclease III (dicer1), mRNA. (5682 bp)

db_xref="CDD:460900" misc_feature 2152..2211 /gene="dicer1" /gene_synonym="dcr1; dicer; herna" /note="propagated from UniProtKB/Swiss-Prot (B3DLA6.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 2629..3006 /gene="dicer1" /gene_synonym="dcr1; dicer; herna" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD...

Synonym: dcr1; dicer; herna
NM_001129918.2 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

Data Export:

Debug Info:

0.000 | 0.000 | search_start;
0.075 | 0.075 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Xenopus tropicalis (tropical clawed frog)?to=0&format=json
0.126 | 0.051 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Xenopus tropicalis (tropical clawed frog)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.128 | 0.003 | cgi_end;

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]

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