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2021-12-06 10:56:03, GGRNA : RefSeq release 208 (Sep, 2021)

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Clostridium kluyveri strain NBRC 12016 23S ribosomal RNA gene, complete sequence. (2896 bp)
Clostridium kluyveri" /mol_type="rRNA" /strain="NBRC 12016" /culture_collection="NBRC:12016" /type_material="type strain of Clostridium kluyveri" /db_xref="taxon:1534" rRNA 1..2896 /product="23S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Inui,M., Nonaka,H., Shinoda,Y., Ikenaga,Y., Abe,M., Naito,K., Vertes,A.A. and Yukawa,H. TITLE Complete genome sequence of Clostridium kluyveri and comaprative genomics of Clostridia species JOURNAL Unpublished REFERENCE 2 (bases 1 to 2896) CONSRTM NCBI RefSeq Targeted Loci Project TITLE Direct Submission JOURNAL Submitted (14-FEB-2013) National Center for...
NR_076268.1 - Clostridium kluyveri - NCBI
Clostridium kluyveri NBRC 12016 strain NBRC 12016 5S ribosomal RNA, complete sequence. (114 bp)
mol_type="rRNA" /strain="NBRC 12016" /type_material="type strain of Clostridium kluyveri" /db_xref="taxon:583346" /note="type strain of Clostridium kluyveri NBRC 12016" rRNA 1..114 /product="5S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Inui,M., Nonaka,H., Shinoda,Y., Ikenaga,Y., Abe,M., Naito,K., Vertes,A.A. and Yukawa,H. TITLE Complete genome sequence of Clostridium kluyveri and comaprative genomics of Clostridia species JOURNAL Unpublished REFERENCE 2 (bases 1 to 114) CONSRTM NCBI RefSeq Targeted Loci Project TITLE Direct Submission JOURNAL Submitted (14-FEB-2013) National Center for...
NR_075229.1 - Clostridium kluyveri NBRC 12016 - NCBI
Clostridium kluyveri NBRC 12016 16S ribosomal RNA, partial sequence. (1506 bp)
genes (from 1.93 Mbp to 1.99 Mbp). A similar region occurs in DSM 555 (1.93 Mbp to 2.06 Mbp) but it is not only double the size of the NBRC12016 region, but also a duplicate." rRNA 1506 /product="16S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Inui,M., Nonaka,H., Shinoda,Y., Ikenaga,Y., Abe,M., Naito,K., Vertes,A.A. and Yukawa,H. TITLE Complete genome sequence of Clostridium kluyveri and comaprative genomics of Clostridia species JOURNAL Unpublished REFERENCE 2 (bases 1 to 1506) CONSRTM NCBI RefSeq Targeted Loci Project TITLE Direct Submission JOURNAL Submitted (28-JAN-2013) National Center...
NR_074447.1 - Clostridium kluyveri NBRC 12016 - NCBI
Sus scrofa cyclin dependent kinase 1 (CDK1), mRNA. (1265 bp)
STS 702..885 /gene="CDK1" /gene_synonym="CDC2" /standard_name="ksks369" /db_xref="UniSTS:514418" STS 766..907 /gene="CDK1" /gene_synonym="CDC2" /standard_name="RH71273" /db_xref="UniSTS:82900" ORIGIN // REFERENCE 1 (bases 1 to 1265) AUTHORS Fujii W, Nishimura T, Kano K, Sugiura K and Naito K. TITLE CDK7 and CCNH are components of CDK-activating kinase and are required for meiotic progression of pig oocytes JOURNAL Biol. Reprod. 85 (6), 1124-1132 (2011) PUBMED 21778139 REMARK GeneRIF: CDK7 and CCNH activate CDC2 by T161 phosphorylation and make up CDK-activating kinase, which is required for...
Synonym: CDC2
NM_001159304.2 - Sus scrofa (pig) - NCBI
Bacillus hisashii strain N-11 16S ribosomal RNA, partial sequence. (1506 bp)
print REFERENCE 2 (bases 1 to 1506) CONSRTM NCBI RefSeq Targeted Loci Project TITLE Direct Submission JOURNAL Submitted (28-NOV-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1506) AUTHORS Miyamoto,H., Seta,M., Horiuchi,S., Iwasawa,Y., Naito,T., Miyamoto,H., Itoh,K. and Kodama,H. TITLE Direct Submission JOURNAL Submitted (03-MAR-2011) Contact:Hiroaki Kodama Chiba University, Graduate School of Horticulture; 648, Matsudo, Chiba 271-8510, Japan...
NR_144578.1 - Caldibacillus hisashii - NCBI
Porphyromonas gingivalis strain ATCC 33277 23S ribosomal RNA gene, complete sequence. (2883 bp)
Location/Qualifiers source 1..2883 /organism="Porphyromonas gingivalis" /mol_type="rRNA" /strain="ATCC 33277" /culture_collection="ATCC:33277" /type_material="type strain of Porphyromonas gingivalis" /db_xref="taxon:837" rRNA 1..2883 /product="23S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Naito,M., Hirakawa,H., Yamashita,A., Ohara,N., Shoji,M., Yukitake,H., Nakayama,K., Toh,H., Yoshimura,F., Kuhara,S., Hattori,M., Hayashi,T. and Nakayama,K. TITLE Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive...
NR_076276.1 - Porphyromonas gingivalis - NCBI
Porphyromonas gingivalis ATCC 33277 strain ATCC 33277 5S ribosomal RNA, complete sequence. (108 bp)
organism="Porphyromonas gingivalis ATCC 33277" /mol_type="rRNA" /strain="ATCC 33277" /type_material="type strain of Porphyromonas gingivalis" /db_xref="taxon:431947" /note="type strain of Porphyromonas gingivalis ATCC 33277" rRNA 1..108 /product="5S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Naito,M., Hirakawa,H., Yamashita,A., Ohara,N., Shoji,M., Yukitake,H., Nakayama,K., Toh,H., Yoshimura,F., Kuhara,S., Hattori,M., Hayashi,T. and Nakayama,K. TITLE Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive...
NR_075237.1 - Porphyromonas gingivalis ATCC 33277 - NCBI
Porphyromonas gingivalis ATCC 33277 16S ribosomal RNA, partial sequence. (1475 bp)
Qualifiers source 1..1475 /organism="Porphyromonas gingivalis ATCC 33277" /mol_type="rRNA" /strain="ATCC 33277" /culture_collection="ATCC:33277" /type_material="type strain of Porphyromonas gingivalis" /db_xref="taxon:431947" rRNA 1475 /product="16S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Naito,M., Hirakawa,H., Yamashita,A., Ohara,N., Shoji,M., Yukitake,H., Nakayama,K., Toh,H., Yoshimura,F., Kuhara,S., Hattori,M., Hayashi,T. and Nakayama,K. TITLE Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive...
NR_074234.1 - Porphyromonas gingivalis ATCC 33277 - NCBI
Rattus norvegicus MOS proto-oncogene, serine/threonine kinase (Mos), mRNA. (1308 bp)
REMARK GeneRIF: NGF, by enhancing Mos in late spermatocytes, is one of the intra-testicular factors which adjusts the number of round spermatids that can be supported by Sertoli cells Publication Status: Online-Only REFERENCE 3 (bases 1 to 1308) AUTHORS Nishimura T, Shimaoka T, Kano K and Naito K. TITLE Insufficient amount of Cdc2 and continuous activation of Wee1 B are the cause of meiotic failure in porcine growing oocytes JOURNAL J. Reprod. Dev. 55 (5), 553-557 (2009) PUBMED 19550110 REFERENCE 4 (bases 1 to 1308) AUTHORS Ohashi S, Naito K, Sugiura K, Iwamori N, Goto S, Naruoka H and Tojo H...
NM_020102.4 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Sus scrofa protein kinase cAMP-dependent type II regulatory subunit alpha (PRKAR2A), mRNA. (1236 bp)
exon 866..931 /gene="PRKAR2A" /inference="alignment:Splign:2.1.0" exon 932..1073 /gene="PRKAR2A" /inference="alignment:Splign:2.1.0" exon 1074..1236 /gene="PRKAR2A" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 1236) AUTHORS Nishimura T, Fujii W, Sugiura K and Naito K. TITLE Cytoplasmic anchoring of cAMP-dependent protein kinase (PKA) by A-kinase anchor proteins (AKAPs) is required for meiotic arrest of porcine full-grown and growing oocytes JOURNAL Biol Reprod 90 (3), 58 (2014) PUBMED 24501172 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1236) AUTHORS...
NM_214258.2 - Sus scrofa (pig) - NCBI
Gallus gallus ALX homeobox 4 (ALX4), mRNA. (1164 bp)
gene="ALX4" /inference="alignment:Splign:2.1.0" exon 712..840 /gene="ALX4" /inference="alignment:Splign:2.1.0" exon 841..1164 /gene="ALX4" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 1164) AUTHORS Takahashi M, Tamura K, Buscher D, Masuya H, Yonei-Tamura S, Matsumoto K, Naitoh-Matsuo M, Takeuchi J, Ogura K, Shiroishi T, Ogura T and Izpisua Belmonte JC. TITLE The role of Alx-4 in the establishment of anteroposterior polarity during vertebrate limb development JOURNAL Development 125 (22), 4417-4425 (1998) PUBMED 9778501 REMARK Erratum:...
NM_204162.1 - Gallus gallus (chicken) - NCBI - UCSC
Sus scrofa MOS proto-oncogene, serine/threonine kinase (MOS), mRNA. (1675 bp)
MOS" /gene_synonym="c-mos; p39-mos" /note="activation loop (A-loop); other site" /db_xref="CDD:270881" STS 1226..1382 /gene="MOS" /gene_synonym="c-mos; p39-mos" /standard_name="CMOSMS" /db_xref="UniSTS:252616" ORIGIN // REFERENCE 1 (bases 1 to 1675) AUTHORS Nishimura T, Shimaoka T, Kano K and Naito K. TITLE Insufficient amount of Cdc2 and continuous activation of Wee1 B are the cause of meiotic failure in porcine growing oocytes JOURNAL J Reprod Dev 55 (5), 553-557 (2009) PUBMED 19550110 REFERENCE 2 (bases 1 to 1675) AUTHORS Dai Y, Newman B and Moor R. TITLE Translational regulation of MOS...
Synonym: c-mos; p39-mos
NM_001113219.1 - Sus scrofa (pig) - NCBI
Danio rerio serpin peptidase inhibitor, clade I (neuroserpin), member 1 (serpini1), mRNA. (1974 bp)
AUTHORS Kalka M, Markiewicz N, Ptak M, Sone ED, Ozyhar A, Dobryszycki P and Wojtas M. TITLE In vivo and in vitro analysis of starmaker activity in zebrafish otolith biomineralization JOURNAL FASEB J 33 (6), 6877-6886 (2019) PUBMED 30840836 REFERENCE 3 (bases 1 to 1974) AUTHORS Aoki M, Segawa H, Naito M and Okamoto H. TITLE Identification of possible downstream genes required for the extension of peripheral axons in primary sensory neurons JOURNAL Biochem Biophys Res Commun 445 (2), 357-362 (2014) PUBMED 24513284 REFERENCE 4 (bases 1 to 1974) AUTHORS Toro S, Wegner J, Muller M, Westerfield M...
Synonym: serpini1l; si:ch211-167c22.4
NM_001128692.1 - Danio rerio (zebrafish) - NCBI - UCSC
Rattus norvegicus double C2 domain alpha (Doc2a), mRNA. (1447 bp)
JP. TITLE Different spatiotemporal expression of DOC2 genes in the developing rat brain argues for an additional, nonsynaptic role of DOC2B in early development JOURNAL Eur J Neurosci 12 (1), 165-171 (2000) PUBMED 10651871 REFERENCE 4 (bases 1 to 1447) AUTHORS Nagano F, Orita S, Sasaki T, Naito A, Sakaguchi G, Maeda M, Watanabe T, Kominami E, Uchiyama Y and Takai Y. TITLE Interaction of Doc2 with tctex-1, a light chain of cytoplasmic dynein. Implication in dynein-dependent vesicle transport JOURNAL J Biol Chem 273 (46), 30065-30068 (1998) PUBMED 9804756 REFERENCE 5 (bases 1 to 1447) AUTHORS...
NM_022937.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Takifugu rubripes taste receptor, type 2, member 1 (tas2r1), mRNA. (921 bp)
of the SMBE Tri-National Young Investigators' Workshop 2005. Lineage-specific expansions and contractions of the bitter taste receptor gene repertoire in vertebrates JOURNAL Mol. Biol. Evol. 23 (5), 964-972 (2006) PUBMED 16484289 REFERENCE 2 (bases 1 to 921) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech. Dev. 122 (12), 1310-1321 (2005) PUBMED 16274966...
NM_001078602.1 - Takifugu rubripes (Fugu rubripes) - NCBI
Mus musculus metastasis associated gene 2 (Mtag2), transcript variant 1, long non-coding RNA. (716 bp)
GeneID:50994" /db_xref="MGI:MGI:1860766" exon 1..716 /gene="Mtag2" /gene_synonym="MA; MAG" /inference="alignment:Splign:2.1.0" regulatory 695..700 /regulatory_class="polyA_signal_sequence" /gene="Mtag2" /gene_synonym="MA; MAG" ORIGIN // REFERENCE 1 (bases 1 to 716) AUTHORS Ishiguro T, Nagawa H, Naito M and Tsuruo T. TITLE Analysis of novel metastasis-associated gene TI-227 JOURNAL Jpn. J. Cancer Res. 91 (4), 390-394 (2000) PUBMED 10804286 REFERENCE 2 (bases 1 to 716) AUTHORS Kelly CD, Carter ND, Jeffery S and Edwards YH. TITLE Characterisation of cDNA clones for rat muscle carbonic anhydrase...
Synonym: MA; MAG
NR_027802.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Solanum lycopersicum Tm-1 protein (Tm-1), mRNA. (2763 bp)
alignment:Splign:2.1.0" exon 2057..2310 /gene="Tm-1" /gene_synonym="Tm-1^GCR237; tm-1^GCR26" /inference="alignment:Splign:2.1.0" exon 2311..2763 /gene="Tm-1" /gene_synonym="Tm-1^GCR237; tm-1^GCR26" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2763) AUTHORS Ishibashi K, Naito S, Meshi T and Ishikawa M. TITLE An inhibitory interaction between viral and cellular proteins underlies the resistance of tomato to nonadapted tobamoviruses JOURNAL Proc Natl Acad Sci U S A 106 (21), 8778-8783 (2009) PUBMED 19423673 REMARK GeneRIF: Results suggest that an inhibitory interaction...
Synonym: Tm-1^GCR237; tm-1^GCR26
NM_001247795.2 - Solanum lycopersicum (Lycopersicon esculentum) - NCBI
Mus musculus metastasis associated gene 2 (Mtag2), transcript variant 2, long non-coding RNA. (687 bp)
db_xref="GeneID:50994" /db_xref="MGI:MGI:1860766" exon 1..114 /gene="Mtag2" /gene_synonym="MA; MAG" /inference="alignment:Splign:2.1.0" exon 115..687 /gene="Mtag2" /gene_synonym="MA; MAG" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 687) AUTHORS Ishiguro T, Nagawa H, Naito M and Tsuruo T. TITLE Analysis of novel metastasis-associated gene TI-227 JOURNAL Jpn. J. Cancer Res. 91 (4), 390-394 (2000) PUBMED 10804286 REFERENCE 2 (bases 1 to 687) AUTHORS Kelly CD, Carter ND, Jeffery S and Edwards YH. TITLE Characterisation of cDNA clones for rat muscle carbonic anhydrase III...
Synonym: MA; MAG
NR_015480.2 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Gallus gallus DEAD-box helicase 3, X-linked (DDX3X), mRNA. (4527 bp)
S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci P, Hayashizaki Y and Buerstedde JM. TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis JOURNAL Genome Biol. 6 (1), R6 (2005) PUBMED 15642098 REFERENCE 2 (bases 1 to 4527) AUTHORS Tsunekawa N, Naito M, Sakai Y, Nishida T and Noce T. TITLE Isolation of chicken vasa homolog gene and tracing the origin of primordial germ cells JOURNAL Development 127 (12), 2741-2750 (2000) PUBMED 10821771...
Synonym: CPL10
NM_001030800.1 - Gallus gallus (chicken) - NCBI - UCSC
Sus scrofa cyclin H (CCNH), mRNA. (972 bp)
Splign:2.1.0" exon 761..872 /gene="CCNH" /inference="alignment:Splign:2.1.0" exon 873..933 /gene="CCNH" /inference="alignment:Splign:2.1.0" exon 934..972 /gene="CCNH" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 972) AUTHORS Fujii W, Nishimura T, Kano K, Sugiura K and Naito K. TITLE CDK7 and CCNH are components of CDK-activating kinase and are required for meiotic progression of pig oocytes JOURNAL Biol. Reprod. 85 (6), 1124-1132 (2011) PUBMED 21778139 REMARK GeneRIF: CDK7 and CCNH activate CDC2 by T161 phosphorylation and make up CDK-activating kinase, which is...
NM_001166313.1 - Sus scrofa (pig) - NCBI
Danio rerio paralemmin 1b (palm1b), mRNA. (2142 bp)
E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and Hertzano R. TITLE RFX transcription factors are essential for hearing in mice JOURNAL Nat Commun 6, 8549 (2015) PUBMED 26469318 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2142) AUTHORS Aoki M, Segawa H, Naito M and Okamoto H. TITLE Identification of possible downstream genes required for the extension of peripheral axons in primary sensory neurons JOURNAL Biochem. Biophys. Res. Commun. 445 (2), 357-362 (2014) PUBMED 24513284 REFERENCE 4 (bases 1 to 2142) AUTHORS Konzer A, Ruhs A, Braun H, Jungblut B,...
Synonym: zgc:63523
NM_200601.1 - Danio rerio (zebrafish) - NCBI - UCSC
Sus scrofa speedy/RINGO cell cycle regulator family member A (SPDYA), mRNA. (936 bp)
alignment:Splign:2.1.0" exon 553..847 /gene="SPDYA" /gene_synonym="RINGO; SPDY1" /inference="alignment:Splign:2.1.0" exon 848..936 /gene="SPDYA" /gene_synonym="RINGO; SPDY1" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 936) AUTHORS Kume S, Endo T, Nishimura Y, Kano K and Naito K. TITLE Porcine SPDYA2 (RINGO A2) stimulates CDC2 activity and accelerates meiotic maturation of porcine oocytes JOURNAL Biol. Reprod. 76 (3), 440-447 (2007) PUBMED 17151349 REMARK GeneRIF: pig SPDYA2 has important role in meiotic maturation of porcine oocytes and the rapid degradation of SPDY...
Synonym: RINGO; SPDY1
NM_001025223.1 - Sus scrofa (pig) - NCBI
Gallus gallus DEAD-box helicase 4 (DDX4), mRNA. (2767 bp)
stem cells to a germ cell fate JOURNAL Dev Biol 330 (1), 73-82 (2009) PUBMED 19324033 REMARK GeneRIF: Thus, our results demonstrate that Vasa can drive ES cell differentiation towards the germ cell lineage, both in vitro and in vivo REFERENCE 5 (bases 1 to 2767) AUTHORS Minematsu T, Harumi T and Naito M. TITLE Germ cell-specific expression of GFP gene induced by chicken vasa homologue (Cvh) promoter in early chicken embryos JOURNAL Mol Reprod Dev 75 (10), 1515-1522 (2008) PUBMED 18324671 REMARK GeneRIF: Cvh promoter provide the basis for for visualization, purification and genetical...
NM_204708.2 - Gallus gallus (chicken) - NCBI - UCSC
Danio rerio taste receptor, type 2, member 201, tandem duplicate 1 (tas2r201.1), mRNA. (942 bp)
of the SMBE Tri-National Young Investigators' Workshop 2005. Lineage-specific expansions and contractions of the bitter taste receptor gene repertoire in vertebrates JOURNAL Mol. Biol. Evol. 23 (5), 964-972 (2006) PUBMED 16484289 REFERENCE 4 (bases 1 to 942) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech. Dev. 122 (12), 1310-1321 (2005) PUBMED 16274966...
Synonym: tas2r2a; zfT2R
NM_001083864.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Oryza sativa Japonica Group cystathionine gamma-synthase 1, chloroplastic (LOC4332956), mRNA. (2033 bp)
binding site [chemical binding]; other site" /db_xref="CDD:99738" misc_feature 1045..1047 /gene="LOC4332956" /note="catalytic residue [active]" /db_xref="CDD:99738" ORIGIN // REFERENCE 1 AUTHORS Ominato,K., Akita,H., Suzuki,A., Kijima,F., Yoshino,T., Yoshino,M., Chiba,Y., Onouchi,H. and Naito,S. TITLE Identification of a short highly conserved amino acid sequence as the functional region required for posttranscriptional autoregulation of the cystathionine gamma-synthase gene in Arabidopsis JOURNAL J. Biol. Chem. 277 (39), 36380-36386 (2002) PUBMED 12121993...
XM_015775752.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Danio rerio taste receptor, type 2, member 200, tandem duplicate 1 (tas2r200.1), mRNA. (963 bp)
of the SMBE Tri-National Young Investigators' Workshop 2005. Lineage-specific expansions and contractions of the bitter taste receptor gene repertoire in vertebrates JOURNAL Mol. Biol. Evol. 23 (5), 964-972 (2006) PUBMED 16484289 REFERENCE 4 (bases 1 to 963) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech. Dev. 122 (12), 1310-1321 (2005) PUBMED 16274966...
Synonym: tas2r1a; zfT2R
NM_001039830.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio taste receptor, type 2, member 200, tandem duplicate 2 (tas2r200.2), mRNA. (963 bp)
of the SMBE Tri-National Young Investigators' Workshop 2005. Lineage-specific expansions and contractions of the bitter taste receptor gene repertoire in vertebrates JOURNAL Mol. Biol. Evol. 23 (5), 964-972 (2006) PUBMED 16484289 REFERENCE 3 (bases 1 to 963) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech. Dev. 122 (12), 1310-1321 (2005) PUBMED 16274966 REFERENCE 4 (bases 1 to 963) AUTHORS Pfister P and Rodriguez I. TITLE Olfactory expression of a single and highly variable V1r pheromone...
Synonym: T2R; T2R2; tas; TAS2R1b; tas2r2l; zfT2R1
NM_001020505.1 - Danio rerio (zebrafish) - NCBI - UCSC
Nicotiana tabacum L-type lectin-domain containing receptor kinase VII.1-like (LOC107806042), mRNA. (2366 bp)
substrate binding site [polypeptide binding]; other site" /db_xref="CDD:270968" misc_feature order(1525..1545,1576..1599) /gene="LOC107806042" /gene_synonym="NtlecRK3" /note="activation loop (A-loop); other site" /db_xref="CDD:270968" ORIGIN // REFERENCE 1 (bases 1 to 2366) AUTHORS Sasabe M, Naito K, Suenaga H, Ikeda T, Toyoda K, Inagaki Y, Shiraishi T and Ichinose Y. TITLE Elicitin-responsive lectin-like receptor kinase genes in BY-2 cells JOURNAL DNA Seq. 18 (2), 152-159 (2007) PUBMED 17364827...
Synonym: NtlecRK3
NM_001325780.1 - Nicotiana tabacum (common tobacco) - NCBI
Danio rerio si:dkeyp-75h12.5 (si:dkeyp-75h12.5), mRNA. (1098 bp)
E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and Hertzano R. TITLE RFX transcription factors are essential for hearing in mice JOURNAL Nat Commun 6, 8549 (2015) PUBMED 26469318 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1098) AUTHORS Aoki M, Segawa H, Naito M and Okamoto H. TITLE Identification of possible downstream genes required for the extension of peripheral axons in primary sensory neurons JOURNAL Biochem. Biophys. Res. Commun. 445 (2), 357-362 (2014) PUBMED 24513284...
Synonym: fj40g07; wu:fj40g07
NM_001386636.1 - Danio rerio (zebrafish) - NCBI - UCSC
Sus scrofa cytoplasmic polyadenylation element binding protein 1 (CPEB1), mRNA. (1701 bp)
PUBMED 24983972 REMARK GeneRIF: Aurora kinase A is unlikely to be involved in CPEB1 activating phosphorylation and cyclin B1 mRNA polyadenylation during meiotic maturation of porcine oocytes. Publication Status: Online-Only REFERENCE 2 (bases 1 to 1701) AUTHORS Nishimura Y, Kano K and Naito K. TITLE Porcine CPEB1 is involved in Cyclin B translation and meiotic resumption in porcine oocytes JOURNAL Anim. Sci. J. 81 (4), 444-452 (2010) PUBMED 20662813 REMARK GeneRIF: results suggest the involvement of mammalian CPEB1 in Cyclin B syntheses and meiotic resumption in mammalian oocytes...
NM_001097510.1 - Sus scrofa (pig) - NCBI
Takifugu rubripes taste receptor, type 1, member 2b (tas1r2b), mRNA. (2451 bp)
alignment:Splign:2.1.0" exon 1198..1401 /gene="tas1r2b" /inference="alignment:Splign:2.1.0" exon 1402..1522 /gene="tas1r2b" /inference="alignment:Splign:2.1.0" exon 1523..2451 /gene="tas1r2b" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2451) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech. Dev. 122 (12), 1310-1321 (2005) PUBMED 16274966...
NM_001105218.1 - Takifugu rubripes (Fugu rubripes) - NCBI
Rattus norvegicus alpha-2-glycoprotein 1, zinc-binding (Azgp1), mRNA. (1212 bp)
Fueyo A, Balbin M, Velasco G, Pendas AM and Lopez-Otin C. TITLE Alternative splicing gives rise to two novel long isoforms of Zn-alpha 2-glycoprotein, a member of the immunoglobulin superfamily JOURNAL Gene 169 (2), 233-236 (1996) PUBMED 8647453 REFERENCE 9 (bases 1 to 1212) AUTHORS Ueyama H, Naitoh H and Ohkubo I. TITLE Structure and expression of rat and mouse mRNAs for Zn-alpha 2-glycoprotein JOURNAL J Biochem 116 (3), 677-681 (1994) PUBMED 7852290 REFERENCE 10 (bases 1 to 1212) AUTHORS Fueyo A, Uria JA, Freije JM and Lopez-Otin C. TITLE Cloning and expression analysis of the cDNA encoding...
Synonym: ZA2GA; Zna2gp
NM_012826.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus succinate dehydrogenase complex subunit D (Sdhd), mRNA; nuclear gene for mitochondrial product. (1292 bp)
JR, Stahl E, Bolouri MS, Ray HN, Sihag S, Kamal M, Patterson N, Lander ES and Mann M. TITLE Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria JOURNAL Cell 115 (5), 629-640 (2003) PUBMED 14651853 REFERENCE 7 (bases 1 to 1292) AUTHORS Naito Y, Tsujino T, Kawasaki D, Okumura T, Morimoto S, Masai M, Sakoda T, Fujioka Y, Ohyanagi M and Iwasaki T. TITLE Circadian gene expression of clock genes and plasminogen activator inhibitor-1 in heart and aorta of spontaneously hypertensive and Wistar-Kyoto rats JOURNAL J Hypertens 21 (6), 1107-1115 (2003)...
Synonym: CII-4; cybS; QPs3
NM_198788.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Sus scrofa cyclin dependent kinase 2 (CDK2), mRNA. (1991 bp)
Tang Q, Li S, Zhang H, Wei Y, Wu H, Liu J, Wang Y, Liu D, Zhang Z and Liu C. TITLE Correlation of the cyclin A expression level with porcine circovirus type 2 propagation efficiency JOURNAL Arch. Virol. 158 (12), 2553-2560 (2013) PUBMED 23836398 REFERENCE 3 (bases 1 to 1991) AUTHORS Sugiura K, Naito K and Tojo H. TITLE Cdk2 activity is essential for the first to second meiosis transition in porcine oocytes JOURNAL J. Reprod. Dev. 51 (1), 143-149 (2005) PUBMED 15750306 REFERENCE 4 (bases 1 to 1991) AUTHORS Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H, Okumura N, Hamasima N and...
NM_001285465.1 - Sus scrofa (pig) - NCBI
Gallus gallus EPH receptor A1 (EPHA1), mRNA. (3900 bp)
inference="alignment:Splign:2.1.0" exon 2722..2877 /gene="EPHA1" /gene_synonym="EPHA9" /inference="alignment:Splign:2.1.0" exon 2878..3900 /gene="EPHA1" /gene_synonym="EPHA9" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 3900) AUTHORS Sasaki E, Hikono H, Kaku Y, Kuwana T, Naito M and Sakurai M. TITLE ephA9, a novel avian receptor tyrosine kinase gene JOURNAL Gene 316, 103-110 (2003) PUBMED 14563556...
Synonym: EPHA9
NM_204360.2 - Gallus gallus (chicken) - NCBI - UCSC
Danio rerio fasciculation and elongation protein zeta 1 (zygin I) (fez1), mRNA. (2176 bp)
E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and Hertzano R. TITLE RFX transcription factors are essential for hearing in mice JOURNAL Nat Commun 6, 8549 (2015) PUBMED 26469318 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2176) AUTHORS Aoki M, Segawa H, Naito M and Okamoto H. TITLE Identification of possible downstream genes required for the extension of peripheral axons in primary sensory neurons JOURNAL Biochem. Biophys. Res. Commun. 445 (2), 357-362 (2014) PUBMED 24513284 REFERENCE 4 (bases 1 to 2176) AUTHORS Andersen,I.S., Reiner,A.H., Aanes,H.,...
Synonym: wu:fj14c12; zgc:73258
NM_213396.1 - Danio rerio (zebrafish) - NCBI - UCSC
Mus musculus microRNA 680-3 (Mir680-3), microRNA. (87 bp)
AUTHORS Tarantino C, Paolella G, Cozzuto L, Minopoli G, Pastore L, Parisi S and Russo T. TITLE miRNA 34a, 100, and 137 modulate differentiation of mouse embryonic stem cells JOURNAL FASEB J 24 (9), 3255-3263 (2010) PUBMED 20439489 REFERENCE 2 (bases 1 to 87) AUTHORS Aoi W, Naito Y, Mizushima K, Takanami Y, Kawai Y, Ichikawa H and Yoshikawa T. TITLE The microRNA miR-696 regulates PGC-1{alpha} in mouse skeletal muscle in response to physical activity JOURNAL Am J Physiol Endocrinol Metab 298 (4), E799-E806 (2010) PUBMED 20086200 REFERENCE 3 (bases 1 to 87) AUTHORS Mineno J,...
Synonym: Mirn68; Mirn680-3
NR_030449.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Danio rerio taste receptor, type 2, member 203 (tas2r203), mRNA. (918 bp)
of the SMBE Tri-National Young Investigators' Workshop 2005. Lineage-specific expansions and contractions of the bitter taste receptor gene repertoire in vertebrates JOURNAL Mol. Biol. Evol. 23 (5), 964-972 (2006) PUBMED 16484289 REFERENCE 4 (bases 1 to 918) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech. Dev. 122 (12), 1310-1321 (2005) PUBMED 16274966 REFERENCE 5 (bases 1 to 918) AUTHORS Pfister P and Rodriguez I. TITLE Olfactory expression of a single and highly variable V1r pheromone...
Synonym: T2R; T2R1; tas; tas2r1l; tas2r4; zfT2R
NM_001020506.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio taste receptor, type 2, member 202 (tas2r202), mRNA. (975 bp)
AUTHORS Oike H, Nagai T, Furuyama A, Okada S, Aihara Y, Ishimaru Y, Marui T, Matsumoto I, Misaka T and Abe K. TITLE Characterization of ligands for fish taste receptors JOURNAL J. Neurosci. 27 (21), 5584-5592 (2007) PUBMED 17522303 REFERENCE 5 (bases 1 to 975) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech. Dev. 122 (12), 1310-1321 (2005) PUBMED 16274966...
Synonym: tas2r5; zfT2R
NM_001100629.1 - Danio rerio (zebrafish) - NCBI - UCSC
Takifugu rubripes taste 1 receptor member 2 (tas1r2), mRNA. (2538 bp)
tas1r1" /inference="alignment:Splign:2.1.0" exon 1492..1612 /gene="tas1r2" /gene_synonym="tas1r1" /inference="alignment:Splign:2.1.0" exon 1613..2538 /gene="tas1r2" /gene_synonym="tas1r1" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2538) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech. Dev. 122 (12), 1310-1321 (2005) PUBMED 16274966...
Synonym: tas1r1
NM_001097625.1 - Takifugu rubripes (Fugu rubripes) - NCBI
Rattus norvegicus matrix metallopeptidase 10 (Mmp10), mRNA. (1714 bp)
MG, Schmid-Schonbein GW and O'Connor DT. TITLE Matrix metalloproteinases: discrete elevations in essential hypertension and hypertensive end-stage renal disease JOURNAL Clin Exp Hypertens 31 (7), 521-533 (2009) PUBMED 19886850 REFERENCE 5 (bases 1 to 1714) AUTHORS Nishino K, Yamanouchi K, Naito K and Tojo H. TITLE Matrix metalloproteinases regulate mesonephric cell migration in developing XY gonads which correlates with the inhibition of tissue inhibitor of metalloproteinase-3 by Sry JOURNAL Dev Growth Differ 44 (1), 35-43 (2002) PUBMED 11869290 REFERENCE 6 (bases 1 to 1714) AUTHORS Saghizadeh...
Synonym: SL-2
NM_133514.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Takifugu rubripes taste receptor, type 1, member 3 (tas1r3), mRNA. (2562 bp)
alignment:Splign:2.1.0" exon 1477..1597 /gene="tas1r3" /inference="alignment:Splign:2.1.0" exon 1598..1968 /gene="tas1r3" /inference="alignment:Splign:2.1.0" exon 1969..2562 /gene="tas1r3" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2562) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech. Dev. 122 (12), 1310-1321 (2005) PUBMED 16274966...
NM_001078629.1 - Takifugu rubripes (Fugu rubripes) - NCBI
Danio rerio neuritin 1a (nrn1a), mRNA. (659 bp)
O, Spaink HP, Levraud JP and Boudinot P. TITLE Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes JOURNAL J Immunol 192 (9), 4328-4341 (2014) PUBMED 24683187 REFERENCE 4 (bases 1 to 659) AUTHORS Aoki M, Segawa H, Naito M and Okamoto H. TITLE Identification of possible downstream genes required for the extension of peripheral axons in primary sensory neurons JOURNAL Biochem Biophys Res Commun 445 (2), 357-362 (2014) PUBMED 24513284 REFERENCE 5 (bases 1 to 659) AUTHORS Akten B, Kye MJ, Hao le T, Wertz MH, Singh S,...
Synonym: cpg1; n; nrn1; zgc:92828
NM_001002507.2 - Danio rerio (zebrafish) - NCBI - UCSC
Mus musculus microRNA 680-1 (Mir680-1), microRNA. (109 bp)
AUTHORS Tarantino C, Paolella G, Cozzuto L, Minopoli G, Pastore L, Parisi S and Russo T. TITLE miRNA 34a, 100, and 137 modulate differentiation of mouse embryonic stem cells JOURNAL FASEB J 24 (9), 3255-3263 (2010) PUBMED 20439489 REFERENCE 3 (bases 1 to 109) AUTHORS Aoi W, Naito Y, Mizushima K, Takanami Y, Kawai Y, Ichikawa H and Yoshikawa T. TITLE The microRNA miR-696 regulates PGC-1{alpha} in mouse skeletal muscle in response to physical activity JOURNAL Am J Physiol Endocrinol Metab 298 (4), E799-E806 (2010) PUBMED 20086200 REFERENCE 4 (bases 1 to 109) AUTHORS Mineno J,...
Synonym: Mirn68; Mirn680-1
NR_030447.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus cytochrome P450, family 2, subfamily d, polypeptide 2 (Cyp2d2), mRNA. (1674 bp)
during rat pregnancy JOURNAL Biochem Pharmacol 75 (8), 1677-1687 (2008) PUBMED 18342837 REFERENCE 5 (bases 1 to 1674) AUTHORS Narimatsu S, Kiryu K, Yonemoto R, Yoshino M, Kobatake M, Kazamori D, Hagino S, Masuda K, Katsu T, Asanuma M, Kumamoto T, Ishikawa T, Funae Y, Yamano S, Hanioka N and Naito S. TITLE The roles of amino acid residues at positions 216 and 219 in the structural stability and metabolic functions of rat cytochrome P450 2D1 and 2D2 JOURNAL Chem Biol Interact 172 (1), 11-21 (2008) PUBMED 18191824 REMARK GeneRIF: The effects of the mutual substitution of amino acid residues at...
Synonym: Cyp2d26; CYPIID26; P450-CMF2; P450-DB2
NM_012730.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Mus musculus microRNA 680-2 (Mir680-2), microRNA. (110 bp)
AUTHORS Tarantino C, Paolella G, Cozzuto L, Minopoli G, Pastore L, Parisi S and Russo T. TITLE miRNA 34a, 100, and 137 modulate differentiation of mouse embryonic stem cells JOURNAL FASEB J 24 (9), 3255-3263 (2010) PUBMED 20439489 REFERENCE 3 (bases 1 to 110) AUTHORS Aoi W, Naito Y, Mizushima K, Takanami Y, Kawai Y, Ichikawa H and Yoshikawa T. TITLE The microRNA miR-696 regulates PGC-1{alpha} in mouse skeletal muscle in response to physical activity JOURNAL Am J Physiol Endocrinol Metab 298 (4), E799-E806 (2010) PUBMED 20086200 REFERENCE 4 (bases 1 to 110) AUTHORS Mineno J,...
Synonym: Mirn68; Mirn680-2
NR_030448.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Danio rerio tubulin polymerization-promoting protein family member 2 (tppp2), mRNA. (3088 bp)
REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 3088) AUTHORS Orosz F. TITLE On the tubulin polymerization promoting proteins of zebrafish JOURNAL Biochem. Biophys. Res. Commun. 457 (3), 267-272 (2015) PUBMED 25576359 REFERENCE 5 (bases 1 to 3088) AUTHORS Aoki M, Segawa H, Naito M and Okamoto H. TITLE Identification of possible downstream genes required for the extension of peripheral axons in primary sensory neurons JOURNAL Biochem. Biophys. Res. Commun. 445 (2), 357-362 (2014) PUBMED 24513284...
Synonym: tp
NM_001326439.1 - Danio rerio (zebrafish) - NCBI - UCSC
Oryzias latipes taste 1 receptor member 3 (tas1r3), mRNA. (2562 bp)
M, Kobayashi Y and Yamashita A. TITLE Taste substance binding elicits conformational change of taste receptor T1r heterodimer extracellular domains JOURNAL Sci Rep 6, 25745 (2016) PUBMED 27160511 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2562) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech. Dev. 122 (12), 1310-1321 (2005) PUBMED 16274966 REMARK GeneRIF: Medaka T1R1 and T1R3 show the highest degrees of identity to mammalian T1R1 and T1R3, respectively....
NM_001104725.1 - Oryzias latipes (Japanese medaka) - NCBI
Mus musculus peroxisomal biogenesis factor 11 alpha (Pex11a), transcript variant 2, non-coding RNA. (2175 bp)
aggravated renal interstitial lesions JOURNAL Hypertension 64 (5), 1054-1060 (2014) PUBMED 25113963 REMARK GeneRIF: Pex11a deficiency is associated with a reduced abundance of functional peroxisomes and aggravated renal interstitial lesions. REFERENCE 2 (bases 1 to 2175) AUTHORS Weng H, Ji X, Naito Y, Endo K, Ma X, Takahashi R, Shen C, Hirokawa G, Fukushima Y and Iwai N. TITLE Pex11alpha deficiency impairs peroxisome elongation and division and contributes to nonalcoholic fatty liver in mice JOURNAL Am. J. Physiol. Endocrinol. Metab. 304 (2), E187-E196 (2013) PUBMED 23169785 REMARK GeneRIF:...
Synonym: PEX11; PEX11alpha
NR_153403.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Oryzias latipes taste receptor, type 1, member 2a (tas1r2a), mRNA. (2460 bp)
M, Kobayashi Y and Yamashita A. TITLE Taste substance binding elicits conformational change of taste receptor T1r heterodimer extracellular domains JOURNAL Sci Rep 6, 25745 (2016) PUBMED 27160511 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2460) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech. Dev. 122 (12), 1310-1321 (2005) PUBMED 16274966...
NM_001104858.1 - Oryzias latipes (Japanese medaka) - NCBI

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]