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2023-11-29 14:17:47, GGRNA : RefSeq release 220 (Sep, 2023)

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Clostridium kluyveri NBRC 12016 16S ribosomal RNA, partial sequence. (1506 bp)
genes (from 1.93 Mbp to 1.99 Mbp). A similar region occurs in DSM 555 (1.93 Mbp to 2.06 Mbp) but it is not only double the size of the NBRC12016 region, but also a duplicate." rRNA 1506 /product="16S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Inui,M., Nonaka,H., Shinoda,Y., Ikenaga,Y., Abe,M., Naito,K., Vertes,A.A. and Yukawa,H. TITLE Complete genome sequence of Clostridium kluyveri and comaprative genomics of Clostridia species JOURNAL Unpublished REFERENCE 2 (bases 1 to 1506) CONSRTM NCBI RefSeq Targeted Loci Project TITLE Direct Submission JOURNAL Submitted (28-JAN-2013) National Center...
NR_074447.1 - Clostridium kluyveri NBRC 12016 - NCBI
Clostridium kluyveri strain NBRC 12016 23S ribosomal RNA gene, complete sequence. (2896 bp)
Clostridium kluyveri" /mol_type="rRNA" /strain="NBRC 12016" /culture_collection="NBRC:12016" /type_material="type strain of Clostridium kluyveri" /db_xref="taxon:1534" rRNA 1..2896 /product="23S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Inui,M., Nonaka,H., Shinoda,Y., Ikenaga,Y., Abe,M., Naito,K., Vertes,A.A. and Yukawa,H. TITLE Complete genome sequence of Clostridium kluyveri and comaprative genomics of Clostridia species JOURNAL Unpublished REFERENCE 2 (bases 1 to 2896) CONSRTM NCBI RefSeq Targeted Loci Project TITLE Direct Submission JOURNAL Submitted (14-FEB-2013) National Center for...
NR_076268.1 - Clostridium kluyveri - NCBI
Clostridium kluyveri NBRC 12016 strain NBRC 12016 5S ribosomal RNA, complete sequence. (114 bp)
mol_type="rRNA" /strain="NBRC 12016" /type_material="type strain of Clostridium kluyveri" /db_xref="taxon:583346" /note="type strain of Clostridium kluyveri NBRC 12016" rRNA 1..114 /product="5S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Inui,M., Nonaka,H., Shinoda,Y., Ikenaga,Y., Abe,M., Naito,K., Vertes,A.A. and Yukawa,H. TITLE Complete genome sequence of Clostridium kluyveri and comaprative genomics of Clostridia species JOURNAL Unpublished REFERENCE 2 (bases 1 to 114) CONSRTM NCBI RefSeq Targeted Loci Project TITLE Direct Submission JOURNAL Submitted (14-FEB-2013) National Center for...
NR_075229.1 - Clostridium kluyveri NBRC 12016 - NCBI
Porphyromonas gingivalis ATCC 33277 16S ribosomal RNA, partial sequence. (1475 bp)
Qualifiers source 1..1475 /organism="Porphyromonas gingivalis ATCC 33277" /mol_type="rRNA" /strain="ATCC 33277" /culture_collection="ATCC:33277" /type_material="type strain of Porphyromonas gingivalis" /db_xref="taxon:431947" rRNA 1475 /product="16S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Naito,M., Hirakawa,H., Yamashita,A., Ohara,N., Shoji,M., Yukitake,H., Nakayama,K., Toh,H., Yoshimura,F., Kuhara,S., Hattori,M., Hayashi,T. and Nakayama,K. TITLE Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive...
NR_074234.1 - Porphyromonas gingivalis ATCC 33277 - NCBI
Porphyromonas gingivalis strain ATCC 33277 23S ribosomal RNA gene, complete sequence. (2883 bp)
Location/Qualifiers source 1..2883 /organism="Porphyromonas gingivalis" /mol_type="rRNA" /strain="ATCC 33277" /culture_collection="ATCC:33277" /type_material="type strain of Porphyromonas gingivalis" /db_xref="taxon:837" rRNA 1..2883 /product="23S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Naito,M., Hirakawa,H., Yamashita,A., Ohara,N., Shoji,M., Yukitake,H., Nakayama,K., Toh,H., Yoshimura,F., Kuhara,S., Hattori,M., Hayashi,T. and Nakayama,K. TITLE Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive...
NR_076276.1 - Porphyromonas gingivalis - NCBI
Porphyromonas gingivalis ATCC 33277 strain ATCC 33277 5S ribosomal RNA, complete sequence. (108 bp)
organism="Porphyromonas gingivalis ATCC 33277" /mol_type="rRNA" /strain="ATCC 33277" /type_material="type strain of Porphyromonas gingivalis" /db_xref="taxon:431947" /note="type strain of Porphyromonas gingivalis ATCC 33277" rRNA 1..108 /product="5S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Naito,M., Hirakawa,H., Yamashita,A., Ohara,N., Shoji,M., Yukitake,H., Nakayama,K., Toh,H., Yoshimura,F., Kuhara,S., Hattori,M., Hayashi,T. and Nakayama,K. TITLE Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive...
NR_075237.1 - Porphyromonas gingivalis ATCC 33277 - NCBI
Caldibacillus hisashii strain N-11 16S ribosomal RNA, partial sequence. (1506 bp)
REFERENCE 2 (bases 1 to 1506) CONSRTM NCBI RefSeq Targeted Loci Project TITLE Direct Submission JOURNAL Submitted (28-NOV-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1506) AUTHORS Miyamoto,H., Seta,M., Horiuchi,S., Iwasawa,Y., Naito,T., Miyamoto,H., Itoh,K. and Kodama,H. TITLE Direct Submission JOURNAL Submitted (03-MAR-2011) Contact:Hiroaki Kodama Chiba University, Graduate School of Horticulture; 648, Matsudo, Chiba 271-8510, Japan...
NR_144578.1 - Caldibacillus hisashii - NCBI
Rattus norvegicus pregnancy up-regulated nonubiquitous CaM kinase (Pnck), mRNA. (1619 bp)
in generation of autonomous activity. REFERENCE 2 (bases 1 to 1619) AUTHORS Hook SS and Means AR. TITLE Ca(2+)/CaM-dependent kinases: from activation to function JOURNAL Annu Rev Pharmacol Toxicol 41, 471-505 (2001) PUBMED 11264466 REMARK Review article REFERENCE 3 (bases 1 to 1619) AUTHORS Naito Y, Watanabe Y, Yokokura H, Sugita R, Nishio M and Hidaka H. TITLE Isoform-specific activation and structural diversity of calmodulin kinase I JOURNAL J Biol Chem 272 (51), 32704-32708 (1997) PUBMED 9405489 REFERENCE 4 (bases 1 to 1619) AUTHORS Yokokura H, Terada O, Naito Y and Hidaka H. TITLE...
Synonym: Camk1b
NM_017275.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Sus scrofa protein kinase cAMP-dependent type II regulatory subunit alpha (PRKAR2A), mRNA. (1236 bp)
exon 866..931 /gene="PRKAR2A" /inference="alignment:Splign:2.1.0" exon 932..1073 /gene="PRKAR2A" /inference="alignment:Splign:2.1.0" exon 1074..1236 /gene="PRKAR2A" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 1236) AUTHORS Nishimura T, Fujii W, Sugiura K and Naito K. TITLE Cytoplasmic anchoring of cAMP-dependent protein kinase (PKA) by A-kinase anchor proteins (AKAPs) is required for meiotic arrest of porcine full-grown and growing oocytes JOURNAL Biol Reprod 90 (3), 58 (2014) PUBMED 24501172 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1236) AUTHORS...
NM_214258.2 - Sus scrofa (pig) - NCBI
Sus scrofa WEE2 oocyte meiosis inhibiting kinase (WEE2), mRNA. (2045 bp)
inference="alignment:Splign:2.1.0" exon 1592..1853 /gene="WEE2" /gene_synonym="WEE1B" /inference="alignment:Splign:2.1.0" exon 1854..2022 /gene="WEE2" /gene_synonym="WEE1B" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2045) AUTHORS Shimaoka T, Nishimura T, Kano K and Naito K. TITLE Analyses of the regulatory mechanism of porcine WEE1B: the phosphorylation sites of porcine WEE1B and mouse WEE1B are different JOURNAL J Reprod Dev 57 (2), 223-228 (2011) PUBMED 21123961 REMARK GeneRIF: results suggest pWEE1B is activated after phosphorylation of the Ser77 residue, which is...
Synonym: WEE1B
NM_001097507.2 - Sus scrofa (pig) - NCBI
Takifugu rubripes taste receptor, type 2, member 1 (tas2r1), mRNA. (921 bp)
of the SMBE Tri-National Young Investigators' Workshop 2005. Lineage-specific expansions and contractions of the bitter taste receptor gene repertoire in vertebrates JOURNAL Mol. Biol. Evol. 23 (5), 964-972 (2006) PUBMED 16484289 REFERENCE 2 (bases 1 to 921) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech. Dev. 122 (12), 1310-1321 (2005) PUBMED 16274966...
NM_001078602.1 - Takifugu rubripes (Fugu rubripes) - NCBI
Sus scrofa cyclin dependent kinase 1 (CDK1), mRNA. (1265 bp)
substrate binding site [polypeptide binding]; other site" /db_xref="CDD:270845" misc_feature 552..623 /gene="CDK1" /gene_synonym="CDC2" /note="activation loop (A-loop); other site" /db_xref="CDD:270845" ORIGIN // REFERENCE 1 (bases 1 to 1265) AUTHORS Fujii W, Nishimura T, Kano K, Sugiura K and Naito K. TITLE CDK7 and CCNH are components of CDK-activating kinase and are required for meiotic progression of pig oocytes JOURNAL Biol. Reprod. 85 (6), 1124-1132 (2011) PUBMED 21778139 REMARK GeneRIF: CDK7 and CCNH activate CDC2 by T161 phosphorylation and make up CDK-activating kinase, which is...
Synonym: CDC2
NM_001159304.2 - Sus scrofa (pig) - NCBI
Sus scrofa MOS proto-oncogene, serine/threonine kinase (MOS), mRNA. (1675 bp)
site [polypeptide binding]; other site" /db_xref="CDD:270881" misc_feature order(828..869,882..902) /gene="MOS" /gene_synonym="c-mos; p39-mos" /note="activation loop (A-loop); other site" /db_xref="CDD:270881" ORIGIN // REFERENCE 1 (bases 1 to 1675) AUTHORS Nishimura T, Shimaoka T, Kano K and Naito K. TITLE Insufficient amount of Cdc2 and continuous activation of Wee1 B are the cause of meiotic failure in porcine growing oocytes JOURNAL J Reprod Dev 55 (5), 553-557 (2009) PUBMED 19550110 REFERENCE 2 (bases 1 to 1675) AUTHORS Dai Y, Newman B and Moor R. TITLE Translational regulation of MOS...
Synonym: c-mos; p39-mos
NM_001113219.1 - Sus scrofa (pig) - NCBI
Rattus norvegicus cyclin G2 (Ccng2), mRNA. (2506 bp)
inference="alignment:Splign:2.1.0" exon 790..888 /gene="Ccng2" /inference="alignment:Splign:2.1.0" exon 889..1094 /gene="Ccng2" /inference="alignment:Splign:2.1.0" exon 1095..2472 /gene="Ccng2" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2506) AUTHORS Ohno S, Ikeda JI, Naito Y, Okuzaki D, Sasakura T, Fukushima K, Nishikawa Y, Ota K, Kato Y, Wang M, Torigata K, Kasama T, Uchihashi T, Miura D, Yabuta N, Morii E and Nojima H. TITLE Comprehensive phenotypic analysis of knockout mice deficient in cyclin G1 and cyclin G2 JOURNAL Sci Rep 6, 39091 (2016) PUBMED 27982046...
NM_001105725.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Sus scrofa cyclin H (CCNH), mRNA. (972 bp)
Splign:2.1.0" exon 761..872 /gene="CCNH" /inference="alignment:Splign:2.1.0" exon 873..933 /gene="CCNH" /inference="alignment:Splign:2.1.0" exon 934..972 /gene="CCNH" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 972) AUTHORS Fujii W, Nishimura T, Kano K, Sugiura K and Naito K. TITLE CDK7 and CCNH are components of CDK-activating kinase and are required for meiotic progression of pig oocytes JOURNAL Biol. Reprod. 85 (6), 1124-1132 (2011) PUBMED 21778139 REMARK GeneRIF: CDK7 and CCNH activate CDC2 by T161 phosphorylation and make up CDK-activating kinase, which is...
NM_001166313.1 - Sus scrofa (pig) - NCBI
Rattus norvegicus protein kinase cAMP-dependent type II regulatory subunit alpha (Prkar2a), mRNA. (1541 bp)
Burgers PP, van der Heyden MA, Kok B, Heck AJ and Scholten A. TITLE A systematic evaluation of protein kinase A-A-kinase anchoring protein interaction motifs JOURNAL Biochemistry 54 (1), 11-21 (2015) PUBMED 25097019 REFERENCE 3 (bases 1 to 1541) AUTHORS Nishimura T, Fujii W, Sugiura K and Naito K. TITLE Cytoplasmic anchoring of cAMP-dependent protein kinase (PKA) by A-kinase anchor proteins (AKAPs) is required for meiotic arrest of porcine full-grown and growing oocytes JOURNAL Biol Reprod 90 (3), 58 (2014) PUBMED 24501172 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 1541)...
NM_019264.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Sus scrofa speedy/RINGO cell cycle regulator family member A (SPDYA), mRNA. (936 bp)
alignment:Splign:2.1.0" exon 553..847 /gene="SPDYA" /gene_synonym="RINGO; SPDY1" /inference="alignment:Splign:2.1.0" exon 848..936 /gene="SPDYA" /gene_synonym="RINGO; SPDY1" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 936) AUTHORS Kume S, Endo T, Nishimura Y, Kano K and Naito K. TITLE Porcine SPDYA2 (RINGO A2) stimulates CDC2 activity and accelerates meiotic maturation of porcine oocytes JOURNAL Biol. Reprod. 76 (3), 440-447 (2007) PUBMED 17151349 REMARK GeneRIF: pig SPDYA2 has important role in meiotic maturation of porcine oocytes and the rapid degradation of SPDY...
Synonym: RINGO; SPDY1
NM_001025223.1 - Sus scrofa (pig) - NCBI
Solanum lycopersicum Tm-1 protein (Tm-1), mRNA. (2763 bp)
alignment:Splign:2.1.0" exon 2057..2310 /gene="Tm-1" /gene_synonym="Tm-1^GCR237; tm-1^GCR26" /inference="alignment:Splign:2.1.0" exon 2311..2763 /gene="Tm-1" /gene_synonym="Tm-1^GCR237; tm-1^GCR26" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2763) AUTHORS Ishibashi K, Naito S, Meshi T and Ishikawa M. TITLE An inhibitory interaction between viral and cellular proteins underlies the resistance of tomato to nonadapted tobamoviruses JOURNAL Proc Natl Acad Sci U S A 106 (21), 8778-8783 (2009) PUBMED 19423673 REMARK GeneRIF: Results suggest that an inhibitory interaction...
Synonym: Tm-1^GCR237; tm-1^GCR26
NM_001247795.2 - Solanum lycopersicum (Lycopersicon esculentum) - NCBI
Rattus norvegicus tribbles pseudokinase 1 (Trib1), mRNA. (1972 bp)
Region: PK_TRB1; cd14023" /db_xref="CDD:270925" exon 965..1257 /gene="Trib1" /gene_synonym="Gig2" /inference="alignment:Splign:2.1.0" exon 1258..1972 /gene="Trib1" /gene_synonym="Gig2" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 1972) AUTHORS Satoh T, Kidoya H, Naito H, Yamamoto M, Takemura N, Nakagawa K, Yoshioka Y, Morii E, Takakura N, Takeuchi O and Akira S. TITLE Critical role of Trib1 in differentiation of tissue-resident M2-like macrophages JOURNAL Nature 495 (7442), 524-528 (2013) PUBMED 23515163 REFERENCE 2 (bases 1 to 1972) AUTHORS Dedhia PH, Keeshan K, Uljon...
Synonym: Gig2
NM_023985.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus cyclin B2 (Ccnb2), mRNA. (1520 bp)
These results advance the knowledge of cell cycle regulators effects in tubular restoration and/or degeneration, and the cyclin b2 and CDC2 molecules are suggested to be a marker for the proliferation of proximal tubular cells in kidney failure. REFERENCE 4 (bases 1 to 1520) AUTHORS Kuroda T, Naito K, Sugiura K, Yamashita M, Takakura I and Tojo H. TITLE Analysis of the roles of cyclin B1 and cyclin B2 in porcine oocyte maturation by inhibiting synthesis with antisense RNA injection JOURNAL Biol Reprod 70 (1), 154-159 (2004) PUBMED 12954723 REFERENCE 5 (bases 1 to 1520) AUTHORS Brandeis M,...
NM_001009470.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Sus scrofa aurora kinase A (AURKA), mRNA. (1218 bp)
PUBMED 24983972 REMARK GeneRIF: Aurora kinase A is unlikely to be involved in CPEB1 activating phosphorylation and cyclin B1 mRNA polyadenylation during meiotic maturation of porcine oocytes. Publication Status: Online-Only REFERENCE 2 (bases 1 to 1218) AUTHORS Nishimura Y, Kano K and Naito K. TITLE Porcine CPEB1 is involved in Cyclin B translation and meiotic resumption in porcine oocytes JOURNAL Anim Sci J 81 (4), 444-452 (2010) PUBMED 20662813 REFERENCE 3 (bases 1 to 1218) AUTHORS Nishimura Y, Endo T, Kano K and Naito K. TITLE Porcine Aurora A accelerates Cyclin B and Mos synthesis and...
Synonym: ARK-1; STK6
NM_001025225.1 - Sus scrofa (pig) - NCBI
Mus musculus metastasis associated gene 2 (Mtag2), transcript variant 1, long non-coding RNA. (716 bp)
db_xref="GeneID:50994" /db_xref="MGI:MGI:1860766" exon 1..716 /gene="Mtag2" /gene_synonym="MAG" /inference="alignment:Splign:2.1.0" regulatory 695..700 /regulatory_class="polyA_signal_sequence" /gene="Mtag2" /gene_synonym="MAG" ORIGIN // REFERENCE 1 (bases 1 to 716) AUTHORS Ishiguro T, Nagawa H, Naito M and Tsuruo T. TITLE Analysis of novel metastasis-associated gene TI-227 JOURNAL Jpn J Cancer Res 91 (4), 390-394 (2000) PUBMED 10804286 REFERENCE 2 (bases 1 to 716) AUTHORS Kelly CD, Carter ND, Jeffery S and Edwards YH. TITLE Characterisation of cDNA clones for rat muscle carbonic anhydrase III...
Synonym: MAG
NR_027802.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus metastasis associated gene 2 (Mtag2), transcript variant 2, long non-coding RNA. (687 bp)
variant 2" /db_xref="GeneID:50994" /db_xref="MGI:MGI:1860766" exon 1..114 /gene="Mtag2" /gene_synonym="MAG" /inference="alignment:Splign:2.1.0" exon 115..687 /gene="Mtag2" /gene_synonym="MAG" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 687) AUTHORS Ishiguro T, Nagawa H, Naito M and Tsuruo T. TITLE Analysis of novel metastasis-associated gene TI-227 JOURNAL Jpn J Cancer Res 91 (4), 390-394 (2000) PUBMED 10804286 REFERENCE 2 (bases 1 to 687) AUTHORS Kelly CD, Carter ND, Jeffery S and Edwards YH. TITLE Characterisation of cDNA clones for rat muscle carbonic anhydrase III...
Synonym: MAG
NR_015480.2 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Gallus gallus DEAD-box helicase 4 (DDX4), mRNA. (2948 bp)
stem cells to a germ cell fate JOURNAL Dev Biol 330 (1), 73-82 (2009) PUBMED 19324033 REMARK GeneRIF: Thus, our results demonstrate that Vasa can drive ES cell differentiation towards the germ cell lineage, both in vitro and in vivo REFERENCE 5 (bases 1 to 2948) AUTHORS Minematsu T, Harumi T and Naito M. TITLE Germ cell-specific expression of GFP gene induced by chicken vasa homologue (Cvh) promoter in early chicken embryos JOURNAL Mol Reprod Dev 75 (10), 1515-1522 (2008) PUBMED 18324671 REMARK GeneRIF: Cvh promoter provide the basis for for visualization, purification and genetical...
NM_204708.3 - Gallus gallus (chicken) - NCBI - UCSC
Mus musculus caveolae associated 4 (Cavin4), mRNA. (2062 bp)
J Am Heart Assoc 8 (15), e012047 (2019) PUBMED 31364493 REMARK GeneRIF: Systems Network Genomic Analysis Reveals Cardioprotective Effect of MURC/Cavin-4 Deletion Against Ischemia/Reperfusion Injury. REFERENCE 3 (bases 1 to 2062) AUTHORS Miyagawa K, Ogata T, Ueyama T, Kasahara T, Nakanishi N, Naito D, Taniguchi T, Hamaoka T, Maruyama N, Nishi M, Kimura T, Yamada H, Aoki H and Matoba S. TITLE Loss of MURC/Cavin-4 induces JNK and MMP-9 activity enhancement in vascular smooth muscle cells and exacerbates abdominal aortic aneurysm JOURNAL Biochem Biophys Res Commun 487 (3), 587-593 (2017) PUBMED...
Synonym: 2310039E09Rik; Murc
NM_026509.3 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus double C2 domain alpha (Doc2a), mRNA. (1447 bp)
JP. TITLE Different spatiotemporal expression of DOC2 genes in the developing rat brain argues for an additional, nonsynaptic role of DOC2B in early development JOURNAL Eur J Neurosci 12 (1), 165-171 (2000) PUBMED 10651871 REFERENCE 5 (bases 1 to 1447) AUTHORS Nagano F, Orita S, Sasaki T, Naito A, Sakaguchi G, Maeda M, Watanabe T, Kominami E, Uchiyama Y and Takai Y. TITLE Interaction of Doc2 with tctex-1, a light chain of cytoplasmic dynein. Implication in dynein-dependent vesicle transport JOURNAL J Biol Chem 273 (46), 30065-30068 (1998) PUBMED 9804756 REFERENCE 6 (bases 1 to 1447) AUTHORS...
NM_022937.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Gallus gallus ALX homeobox 4 (ALX4), transcript variant 3, mRNA. (5239 bp)
Region: OAR; pfam03826" /db_xref="CDD:427530" exon 530..658 /gene="ALX4" /inference="alignment:Splign:2.1.0" exon 659..5239 /gene="ALX4" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 5239) AUTHORS Takahashi M, Tamura K, Buscher D, Masuya H, Yonei-Tamura S, Matsumoto K, Naitoh-Matsuo M, Takeuchi J, Ogura K, Shiroishi T, Ogura T and Izpisua Belmonte JC. TITLE The role of Alx-4 in the establishment of anteroposterior polarity during vertebrate limb development JOURNAL Development 125 (22), 4417-4425 (1998) PUBMED 9778501 REMARK Erratum:...
NM_001397959.1 - Gallus gallus (chicken) - NCBI - UCSC
Gallus gallus ALX homeobox 4 (ALX4), transcript variant 2, mRNA. (5253 bp)
Region: OAR; pfam03826" /db_xref="CDD:427530" exon 544..672 /gene="ALX4" /inference="alignment:Splign:2.1.0" exon 673..5253 /gene="ALX4" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 5253) AUTHORS Takahashi M, Tamura K, Buscher D, Masuya H, Yonei-Tamura S, Matsumoto K, Naitoh-Matsuo M, Takeuchi J, Ogura K, Shiroishi T, Ogura T and Izpisua Belmonte JC. TITLE The role of Alx-4 in the establishment of anteroposterior polarity during vertebrate limb development JOURNAL Development 125 (22), 4417-4425 (1998) PUBMED 9778501 REMARK Erratum:...
NM_001397958.1 - Gallus gallus (chicken) - NCBI - UCSC
Rattus norvegicus MOS proto-oncogene, serine/threonine kinase (Mos), mRNA. (1308 bp)
REMARK GeneRIF: NGF, by enhancing Mos in late spermatocytes, is one of the intra-testicular factors which adjusts the number of round spermatids that can be supported by Sertoli cells Publication Status: Online-Only REFERENCE 3 (bases 1 to 1308) AUTHORS Nishimura T, Shimaoka T, Kano K and Naito K. TITLE Insufficient amount of Cdc2 and continuous activation of Wee1 B are the cause of meiotic failure in porcine growing oocytes JOURNAL J Reprod Dev 55 (5), 553-557 (2009) PUBMED 19550110 REFERENCE 4 (bases 1 to 1308) AUTHORS Ohashi S, Naito K, Sugiura K, Iwamori N, Goto S, Naruoka H and Tojo H....
NM_020102.4 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Mus musculus double C2, alpha (Doc2a), transcript variant 7, non-coding RNA. (1875 bp)
Oorschot VM, Klumperman J and Verhage M. TITLE Quantification of synapse formation and maintenance in vivo in the absence of synaptic release JOURNAL Neuroscience 126 (1), 115-126 (2004) PUBMED 15145078 REFERENCE 9 (bases 1 to 1875) AUTHORS Sakaguchi G, Manabe T, Kobayashi K, Orita S, Sasaki T, Naito A, Maeda M, Igarashi H, Katsuura G, Nishioka H, Mizoguchi A, Itohara S, Takahashi T and Takai Y. TITLE Doc2alpha is an activity-dependent modulator of excitatory synaptic transmission JOURNAL Eur J Neurosci 11 (12), 4262-4268 (1999) PUBMED 10594652 REFERENCE 10 (bases 1 to 1875) AUTHORS Naito A,...
NR_178187.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus double C2, alpha (Doc2a), transcript variant 8, non-coding RNA. (2181 bp)
Oorschot VM, Klumperman J and Verhage M. TITLE Quantification of synapse formation and maintenance in vivo in the absence of synaptic release JOURNAL Neuroscience 126 (1), 115-126 (2004) PUBMED 15145078 REFERENCE 9 (bases 1 to 2181) AUTHORS Sakaguchi G, Manabe T, Kobayashi K, Orita S, Sasaki T, Naito A, Maeda M, Igarashi H, Katsuura G, Nishioka H, Mizoguchi A, Itohara S, Takahashi T and Takai Y. TITLE Doc2alpha is an activity-dependent modulator of excitatory synaptic transmission JOURNAL Eur J Neurosci 11 (12), 4262-4268 (1999) PUBMED 10594652 REFERENCE 10 (bases 1 to 2181) AUTHORS Naito A,...
NR_178188.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Sus scrofa cytoplasmic polyadenylation element binding protein 1 (CPEB1), mRNA. (1701 bp)
PUBMED 24983972 REMARK GeneRIF: Aurora kinase A is unlikely to be involved in CPEB1 activating phosphorylation and cyclin B1 mRNA polyadenylation during meiotic maturation of porcine oocytes. Publication Status: Online-Only REFERENCE 2 (bases 1 to 1701) AUTHORS Nishimura Y, Kano K and Naito K. TITLE Porcine CPEB1 is involved in Cyclin B translation and meiotic resumption in porcine oocytes JOURNAL Anim. Sci. J. 81 (4), 444-452 (2010) PUBMED 20662813 REMARK GeneRIF: results suggest the involvement of mammalian CPEB1 in Cyclin B syntheses and meiotic resumption in mammalian oocytes...
NM_001097510.1 - Sus scrofa (pig) - NCBI
Rattus norvegicus MNAT1 component of CDK activating kinase (Mnat1), mRNA. (1334 bp)
exon 616..741 /gene="Mnat1" /inference="alignment:Splign:2.1.0" exon 742..863 /gene="Mnat1" /inference="alignment:Splign:2.1.0" exon 864..1302 /gene="Mnat1" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 1334) AUTHORS Fujii W, Nishimura T, Kano K, Sugiura K and Naito K. TITLE CDK7 and CCNH are components of CDK-activating kinase and are required for meiotic progression of pig oocytes JOURNAL Biol Reprod 85 (6), 1124-1132 (2011) PUBMED 21778139 REFERENCE 2 (bases 1 to 1334) AUTHORS Egly JM and Coin F. TITLE A history of TFIIH: two decades of molecular biology on a pivotal...
NM_153472.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus ITPR interacting domain containing 2 (Itprid2), mRNA. (5206 bp)
inference="alignment:Splign:2.1.0" exon 3881..3999 /gene="Itprid2" /gene_synonym="Ssfa2" /inference="alignment:Splign:2.1.0" exon 4000..5206 /gene="Itprid2" /gene_synonym="Ssfa2" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 5206) AUTHORS Inokuchi J, Komiya M, Baba I, Naito S, Sasazuki T and Shirasawa S. TITLE Deregulated expression of KRAP, a novel gene encoding actin-interacting protein, in human colon cancer cells JOURNAL J Hum Genet 49 (1), 46-52 (2004) PUBMED 14673706...
Synonym: Ssfa2
NM_001107738.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Oryza sativa Japonica Group cystathionine gamma-synthase 1, chloroplastic (LOC4332956), mRNA. (2033 bp)
binding site [chemical binding]; other site" /db_xref="CDD:99738" misc_feature 1045..1047 /gene="LOC4332956" /note="catalytic residue [active]" /db_xref="CDD:99738" ORIGIN // REFERENCE 1 AUTHORS Ominato,K., Akita,H., Suzuki,A., Kijima,F., Yoshino,T., Yoshino,M., Chiba,Y., Onouchi,H. and Naito,S. TITLE Identification of a short highly conserved amino acid sequence as the functional region required for posttranscriptional autoregulation of the cystathionine gamma-synthase gene in Arabidopsis JOURNAL J. Biol. Chem. 277 (39), 36380-36386 (2002) PUBMED 12121993...
XM_015775752.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Gallus gallus ALX homeobox 4 (ALX4), transcript variant 1, mRNA. (5479 bp)
gene="ALX4" /inference="alignment:Splign:2.1.0" exon 770..898 /gene="ALX4" /inference="alignment:Splign:2.1.0" exon 899..5479 /gene="ALX4" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 5479) AUTHORS Takahashi M, Tamura K, Buscher D, Masuya H, Yonei-Tamura S, Matsumoto K, Naitoh-Matsuo M, Takeuchi J, Ogura K, Shiroishi T, Ogura T and Izpisua Belmonte JC. TITLE The role of Alx-4 in the establishment of anteroposterior polarity during vertebrate limb development JOURNAL Development 125 (22), 4417-4425 (1998) PUBMED 9778501 REMARK Erratum:...
NM_204162.2 - Gallus gallus (chicken) - NCBI - UCSC
Rattus norvegicus cyclin G1 (Ccng1), mRNA. (3198 bp)
Yang X and Kong B. TITLE CCNG1 (Cyclin G1) regulation by mutant-P53 via induction of Notch3 expression promotes high-grade serous ovarian cancer (HGSOC) tumorigenesis and progression JOURNAL Cancer Med 8 (1), 351-362 (2019) PUBMED 30565428 REFERENCE 5 (bases 1 to 3198) AUTHORS Ohno S, Ikeda JI, Naito Y, Okuzaki D, Sasakura T, Fukushima K, Nishikawa Y, Ota K, Kato Y, Wang M, Torigata K, Kasama T, Uchihashi T, Miura D, Yabuta N, Morii E and Nojima H. TITLE Comprehensive phenotypic analysis of knockout mice deficient in cyclin G1 and cyclin G2 JOURNAL Sci Rep 6, 39091 (2016) PUBMED 27982046...
Synonym: Ccng; CYCG
NM_012923.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus caveolae associated protein 4 (Cavin4), mRNA. (4016 bp)
novel evidence that MURC regulates SOCE by interacting with STIM1 in cardiomyocytes. In addition, we identified a first potential mechanism by which the R140W mutation of MURC may contribute to calcium mishandling and the development of cardiomyopathies. REFERENCE 2 (bases 1 to 4016) AUTHORS Naito D, Ogata T, Hamaoka T, Nakanishi N, Miyagawa K, Maruyama N, Kasahara T, Taniguchi T, Nishi M, Matoba S and Ueyama T. TITLE The coiled-coil domain of MURC/cavin-4 is involved in membrane trafficking of caveolin-3 in cardiomyocytes JOURNAL Am J Physiol Heart Circ Physiol 309 (12), H2127-H2136 (2015)...
Synonym: RGD1310395
NM_001107931.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Danio rerio taste receptor, type 2, member 202 (tas2r202), mRNA. (975 bp)
AUTHORS Oike H, Nagai T, Furuyama A, Okada S, Aihara Y, Ishimaru Y, Marui T, Matsumoto I, Misaka T and Abe K. TITLE Characterization of ligands for fish taste receptors JOURNAL J Neurosci 27 (21), 5584-5592 (2007) PUBMED 17522303 REFERENCE 5 (bases 1 to 975) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech Dev 122 (12), 1310-1321 (2005) PUBMED 16274966...
Synonym: tas2r5
NM_001100629.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio fasciculation and elongation protein zeta 1 (zygin I) (fez1), mRNA. (2176 bp)
E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and Hertzano R. TITLE RFX transcription factors are essential for hearing in mice JOURNAL Nat Commun 6, 8549 (2015) PUBMED 26469318 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 2176) AUTHORS Aoki M, Segawa H, Naito M and Okamoto H. TITLE Identification of possible downstream genes required for the extension of peripheral axons in primary sensory neurons JOURNAL Biochem Biophys Res Commun 445 (2), 357-362 (2014) PUBMED 24513284 REFERENCE 6 (bases 1 to 2176) AUTHORS Andersen,I.S., Reiner,A.H., Aanes,H.,...
Synonym: wu:fj14c12; zgc:73258
NM_213396.1 - Danio rerio (zebrafish) - NCBI - UCSC
Apis mellifera melittin (Melt), mRNA. (381 bp)
All-atom/coarse-grained approach simulations demonstrated a clear salt effect and a moderate temperature effect on aggregation and support the molten globule model of melittin aggregates. REFERENCE 3 (bases 1 to 381) AUTHORS Norisada K, Javkhlantugs N, Mishima D, Kawamura I, Saito H, Ueda K and Naito A. TITLE Dynamic Structure and Orientation of Melittin Bound to Acidic Lipid Bilayers, As Revealed by Solid-State NMR and Molecular Dynamics Simulation JOURNAL J Phys Chem B 121 (8), 1802-1811 (2017) PUBMED 28165239 REMARK GeneRIF: Molecular dynamics simulation was performed to characterize the...
Synonym: MEL; MLT
NM_001011607.2 - Apis mellifera (honey bee) - NCBI
Takifugu rubripes taste receptor, type 1, member 2b (tas1r2b), mRNA. (2451 bp)
alignment:Splign:2.1.0" exon 1198..1401 /gene="tas1r2b" /inference="alignment:Splign:2.1.0" exon 1402..1522 /gene="tas1r2b" /inference="alignment:Splign:2.1.0" exon 1523..2451 /gene="tas1r2b" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2451) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech. Dev. 122 (12), 1310-1321 (2005) PUBMED 16274966...
NM_001105218.1 - Takifugu rubripes (Fugu rubripes) - NCBI
Rattus norvegicus immunoglobin superfamily, member 21 (Igsf21), mRNA. (2012 bp)
RGD1310117" /inference="alignment:Splign:2.1.0" exon 1747..1785 /gene="Igsf21" /gene_synonym="RGD1310117" /inference="alignment:Splign:2.1.0" exon 1786..2012 /gene="Igsf21" /gene_synonym="RGD1310117" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2012) AUTHORS Tanabe Y, Naito Y, Vasuta C, Lee AK, Soumounou Y, Linhoff MW and Takahashi H. TITLE IgSF21 promotes differentiation of inhibitory synapses via binding to neurexin2alpha JOURNAL Nat Commun 8 (1), 408 (2017) PUBMED 28864826 REMARK Publication Status: Online-Only...
Synonym: RGD1310117
NM_001271454.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Danio rerio tubulin polymerization-promoting protein family member 2 (tppp2), mRNA. (3088 bp)
REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 3088) AUTHORS Orosz F. TITLE On the tubulin polymerization promoting proteins of zebrafish JOURNAL Biochem Biophys Res Commun 457 (3), 267-272 (2015) PUBMED 25576359 REFERENCE 5 (bases 1 to 3088) AUTHORS Aoki M, Segawa H, Naito M and Okamoto H. TITLE Identification of possible downstream genes required for the extension of peripheral axons in primary sensory neurons JOURNAL Biochem Biophys Res Commun 445 (2), 357-362 (2014) PUBMED 24513284...
NM_001326439.1 - Danio rerio (zebrafish) - NCBI - UCSC
Rattus norvegicus dynein light chain Tctex-type 1 (Dynlt1), mRNA. (698 bp)
C, Wolfrum U and Sung CH. TITLE Rhodopsin's carboxy-terminal cytoplasmic tail acts as a membrane receptor for cytoplasmic dynein by binding to the dynein light chain Tctex-1 JOURNAL Cell 97 (7), 877-887 (1999) PUBMED 10399916 REFERENCE 10 (bases 1 to 698) AUTHORS Nagano F, Orita S, Sasaki T, Naito A, Sakaguchi G, Maeda M, Watanabe T, Kominami E, Uchiyama Y and Takai Y. TITLE Interaction of Doc2 with tctex-1, a light chain of cytoplasmic dynein. Implication in dynein-dependent vesicle transport JOURNAL J Biol Chem 273 (46), 30065-30068 (1998) PUBMED 9804756...
Synonym: AGS2; Tctex1
NM_031318.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Danio rerio paralemmin 1b (palm1b), mRNA. (2142 bp)
E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and Hertzano R. TITLE RFX transcription factors are essential for hearing in mice JOURNAL Nat Commun 6, 8549 (2015) PUBMED 26469318 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2142) AUTHORS Aoki M, Segawa H, Naito M and Okamoto H. TITLE Identification of possible downstream genes required for the extension of peripheral axons in primary sensory neurons JOURNAL Biochem. Biophys. Res. Commun. 445 (2), 357-362 (2014) PUBMED 24513284 REFERENCE 4 (bases 1 to 2142) AUTHORS Konzer A, Ruhs A, Braun H, Jungblut B,...
Synonym: zgc:63523
NM_200601.1 - Danio rerio (zebrafish) - NCBI - UCSC
Saccharomyces cerevisiae S288C RUF20 (RUF20), ncRNA. (443 bp)
Davis,R.W., Dujon,B., Feldmann,H., Galibert,F., Hoheisel,J.D., Jacq,C., Johnston,M., Louis,E.J., Mewes,H.W., Murakami,Y., Philippsen,P., Tettelin,H. and Oliver,S.G. TITLE Life with 6000 genes JOURNAL Science 274 (5287), 546 (1996) PUBMED 8849441 REFERENCE 3 (bases 1 to 443) AUTHORS Murakami,Y., Naitou,M., Hagiwara,H., Shibata,T., Ozawa,M., Sasanuma,S., Sasanuma,M., Tsuchiya,Y., Soeda,E., Yokoyama,K. et al. TITLE Analysis of the nucleotide sequence of chromosome VI from Saccharomyces cerevisiae JOURNAL Nat. Genet. 10 (3), 261-268 (1995) PUBMED 7670463 REFERENCE 4 (bases 1 to 443) CONSRTM NCBI...
NR_132173.1 - Saccharomyces cerevisiae S288C - NCBI
Saccharomyces cerevisiae S288C RUF21 (RUF21), ncRNA. (707 bp)
Davis,R.W., Dujon,B., Feldmann,H., Galibert,F., Hoheisel,J.D., Jacq,C., Johnston,M., Louis,E.J., Mewes,H.W., Murakami,Y., Philippsen,P., Tettelin,H. and Oliver,S.G. TITLE Life with 6000 genes JOURNAL Science 274 (5287), 546 (1996) PUBMED 8849441 REFERENCE 3 (bases 1 to 707) AUTHORS Murakami,Y., Naitou,M., Hagiwara,H., Shibata,T., Ozawa,M., Sasanuma,S., Sasanuma,M., Tsuchiya,Y., Soeda,E., Yokoyama,K. et al. TITLE Analysis of the nucleotide sequence of chromosome VI from Saccharomyces cerevisiae JOURNAL Nat. Genet. 10 (3), 261-268 (1995) PUBMED 7670463 REFERENCE 4 (bases 1 to 707) CONSRTM NCBI...
NR_132172.1 - Saccharomyces cerevisiae S288C - NCBI
Sus scrofa protein kinase cAMP-dependent type I regulatory subunit alpha (PRKAR1A), mRNA. (1425 bp)
PRKAR1A" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:237999" misc_feature order(1146..1154,1164..1172) /gene="PRKAR1A" /note="flexible hinge region; other site" /db_xref="CDD:237999" ORIGIN // REFERENCE 1 (bases 1 to 1425) AUTHORS Nishimura T, Fujii W, Sugiura K and Naito K. TITLE Cytoplasmic anchoring of cAMP-dependent protein kinase (PKA) by A-kinase anchor proteins (AKAPs) is required for meiotic arrest of porcine full-grown and growing oocytes JOURNAL Biol Reprod 90 (3), 58 (2014) PUBMED 24501172 REMARK Publication Status: Online-Only REFERENCE 2...
NM_214026.1 - Sus scrofa (pig) - NCBI
Saccharomyces cerevisiae S288C RUF23 (RUF23), ncRNA. (254 bp)
Davis,R.W., Dujon,B., Feldmann,H., Galibert,F., Hoheisel,J.D., Jacq,C., Johnston,M., Louis,E.J., Mewes,H.W., Murakami,Y., Philippsen,P., Tettelin,H. and Oliver,S.G. TITLE Life with 6000 genes JOURNAL Science 274 (5287), 546 (1996) PUBMED 8849441 REFERENCE 3 (bases 1 to 254) AUTHORS Murakami,Y., Naitou,M., Hagiwara,H., Shibata,T., Ozawa,M., Sasanuma,S., Sasanuma,M., Tsuchiya,Y., Soeda,E., Yokoyama,K. et al. TITLE Analysis of the nucleotide sequence of chromosome VI from Saccharomyces cerevisiae JOURNAL Nat. Genet. 10 (3), 261-268 (1995) PUBMED 7670463 REFERENCE 4 (bases 1 to 254) CONSRTM NCBI...
NR_132175.1 - Saccharomyces cerevisiae S288C - NCBI

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Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]