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2024-06-18 01:18:56, GGRNA : RefSeq release 224 (May, 2024)

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Clostridium kluyveri NBRC 12016 16S ribosomal RNA, partial sequence. (1506 bp)
genes (from 1.93 Mbp to 1.99 Mbp). A similar region occurs in DSM 555 (1.93 Mbp to 2.06 Mbp) but it is not only double the size of the NBRC12016 region, but also a duplicate." rRNA 1506 /product="16S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Inui,M., Nonaka,H., Shinoda,Y., Ikenaga,Y., Abe,M., Naito,K., Vertes,A.A. and Yukawa,H. TITLE Complete genome sequence of Clostridium kluyveri and comaprative genomics of Clostridia species JOURNAL Unpublished REFERENCE 2 (bases 1 to 1506) CONSRTM NCBI RefSeq Targeted Loci Project TITLE Direct Submission JOURNAL Submitted (28-JAN-2013) National Center...
NR_074447.1 - Clostridium kluyveri NBRC 12016 - NCBI
Clostridium kluyveri strain NBRC 12016 23S ribosomal RNA gene, complete sequence. (2896 bp)
Clostridium kluyveri" /mol_type="rRNA" /strain="NBRC 12016" /culture_collection="NBRC:12016" /type_material="type strain of Clostridium kluyveri" /db_xref="taxon:1534" rRNA 1..2896 /product="23S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Inui,M., Nonaka,H., Shinoda,Y., Ikenaga,Y., Abe,M., Naito,K., Vertes,A.A. and Yukawa,H. TITLE Complete genome sequence of Clostridium kluyveri and comaprative genomics of Clostridia species JOURNAL Unpublished REFERENCE 2 (bases 1 to 2896) CONSRTM NCBI RefSeq Targeted Loci Project TITLE Direct Submission JOURNAL Submitted (14-FEB-2013) National Center for...
NR_076268.1 - Clostridium kluyveri - NCBI
Clostridium kluyveri NBRC 12016 strain NBRC 12016 5S ribosomal RNA, complete sequence. (114 bp)
mol_type="rRNA" /strain="NBRC 12016" /type_material="type strain of Clostridium kluyveri" /db_xref="taxon:583346" /note="type strain of Clostridium kluyveri NBRC 12016" rRNA 1..114 /product="5S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Inui,M., Nonaka,H., Shinoda,Y., Ikenaga,Y., Abe,M., Naito,K., Vertes,A.A. and Yukawa,H. TITLE Complete genome sequence of Clostridium kluyveri and comaprative genomics of Clostridia species JOURNAL Unpublished REFERENCE 2 (bases 1 to 114) CONSRTM NCBI RefSeq Targeted Loci Project TITLE Direct Submission JOURNAL Submitted (14-FEB-2013) National Center for...
NR_075229.1 - Clostridium kluyveri NBRC 12016 - NCBI
Porphyromonas gingivalis ATCC 33277 16S ribosomal RNA, partial sequence. (1475 bp)
Qualifiers source 1..1475 /organism="Porphyromonas gingivalis ATCC 33277" /mol_type="rRNA" /strain="ATCC 33277" /culture_collection="ATCC:33277" /type_material="type strain of Bacteroides gingivalis" /db_xref="taxon:431947" rRNA 1475 /product="16S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Naito,M., Hirakawa,H., Yamashita,A., Ohara,N., Shoji,M., Yukitake,H., Nakayama,K., Toh,H., Yoshimura,F., Kuhara,S., Hattori,M., Hayashi,T. and Nakayama,K. TITLE Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive...
NR_074234.1 - Porphyromonas gingivalis ATCC 33277 - NCBI
Caldifermentibacillus hisashii strain N-11 16S ribosomal RNA, partial sequence. (1506 bp)
REFERENCE 2 (bases 1 to 1506) CONSRTM NCBI RefSeq Targeted Loci Project TITLE Direct Submission JOURNAL Submitted (28-NOV-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1506) AUTHORS Miyamoto,H., Seta,M., Horiuchi,S., Iwasawa,Y., Naito,T., Miyamoto,H., Itoh,K. and Kodama,H. TITLE Direct Submission JOURNAL Submitted (03-MAR-2011) Contact:Hiroaki Kodama Chiba University, Graduate School of Horticulture; 648, Matsudo, Chiba 271-8510, Japan...
NR_144578.1 - Caldifermentibacillus hisashii - NCBI
Porphyromonas gingivalis strain ATCC 33277 23S ribosomal RNA gene, complete sequence. (2883 bp)
Location/Qualifiers source 1..2883 /organism="Porphyromonas gingivalis" /mol_type="rRNA" /strain="ATCC 33277" /culture_collection="ATCC:33277" /type_material="type strain of Bacteroides gingivalis" /db_xref="taxon:837" rRNA 1..2883 /product="23S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Naito,M., Hirakawa,H., Yamashita,A., Ohara,N., Shoji,M., Yukitake,H., Nakayama,K., Toh,H., Yoshimura,F., Kuhara,S., Hattori,M., Hayashi,T. and Nakayama,K. TITLE Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome...
NR_076276.1 - Porphyromonas gingivalis - NCBI
Mus musculus metastasis associated gene 2 (Mtag2), transcript variant 1, long non-coding RNA. (716 bp)
db_xref="GeneID:50994" /db_xref="MGI:MGI:1860766" exon 1..716 /gene="Mtag2" /gene_synonym="MAG" /inference="alignment:Splign:2.1.0" regulatory 695..700 /regulatory_class="polyA_signal_sequence" /gene="Mtag2" /gene_synonym="MAG" ORIGIN // REFERENCE 1 (bases 1 to 716) AUTHORS Ishiguro T, Nagawa H, Naito M and Tsuruo T. TITLE Analysis of novel metastasis-associated gene TI-227 JOURNAL Jpn J Cancer Res 91 (4), 390-394 (2000) PUBMED 10804286 REFERENCE 2 (bases 1 to 716) AUTHORS Kelly CD, Carter ND, Jeffery S and Edwards YH. TITLE Characterisation of cDNA clones for rat muscle carbonic anhydrase III...
Synonym: MAG
NR_027802.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus metastasis associated gene 2 (Mtag2), transcript variant 2, long non-coding RNA. (687 bp)
variant 2" /db_xref="GeneID:50994" /db_xref="MGI:MGI:1860766" exon 1..114 /gene="Mtag2" /gene_synonym="MAG" /inference="alignment:Splign:2.1.0" exon 115..687 /gene="Mtag2" /gene_synonym="MAG" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 687) AUTHORS Ishiguro T, Nagawa H, Naito M and Tsuruo T. TITLE Analysis of novel metastasis-associated gene TI-227 JOURNAL Jpn J Cancer Res 91 (4), 390-394 (2000) PUBMED 10804286 REFERENCE 2 (bases 1 to 687) AUTHORS Kelly CD, Carter ND, Jeffery S and Edwards YH. TITLE Characterisation of cDNA clones for rat muscle carbonic anhydrase III...
Synonym: MAG
NR_015480.2 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Porphyromonas gingivalis ATCC 33277 strain ATCC 33277 5S ribosomal RNA, complete sequence. (108 bp)
organism="Porphyromonas gingivalis ATCC 33277" /mol_type="rRNA" /strain="ATCC 33277" /type_material="type strain of Bacteroides gingivalis" /db_xref="taxon:431947" /note="type strain of Porphyromonas gingivalis ATCC 33277" rRNA 1..108 /product="5S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Naito,M., Hirakawa,H., Yamashita,A., Ohara,N., Shoji,M., Yukitake,H., Nakayama,K., Toh,H., Yoshimura,F., Kuhara,S., Hattori,M., Hayashi,T. and Nakayama,K. TITLE Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive...
NR_075237.1 - Porphyromonas gingivalis ATCC 33277 - NCBI
Takifugu rubripes taste receptor, type 2, member 1 (tas2r1), mRNA. (921 bp)
of the SMBE Tri-National Young Investigators' Workshop 2005. Lineage-specific expansions and contractions of the bitter taste receptor gene repertoire in vertebrates JOURNAL Mol. Biol. Evol. 23 (5), 964-972 (2006) PUBMED 16484289 REFERENCE 2 (bases 1 to 921) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech. Dev. 122 (12), 1310-1321 (2005) PUBMED 16274966...
NM_001078602.1 - Takifugu rubripes (Fugu rubripes) - NCBI
Sus scrofa protein kinase cAMP-dependent type II regulatory subunit alpha (PRKAR2A), mRNA. (1236 bp)
exon 866..931 /gene="PRKAR2A" /inference="alignment:Splign:2.1.0" exon 932..1073 /gene="PRKAR2A" /inference="alignment:Splign:2.1.0" exon 1074..1236 /gene="PRKAR2A" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 1236) AUTHORS Nishimura,T., Fujii,W., Sugiura,K. and Naito,K. TITLE Cytoplasmic anchoring of cAMP-dependent protein kinase (PKA) by A-kinase anchor proteins (AKAPs) is required for meiotic arrest of porcine full-grown and growing oocytes JOURNAL Biol Reprod 90 (3), 58 (2014) PUBMED 24501172 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1236)...
NM_214258.2 - Sus scrofa (pig) - NCBI
Sus scrofa cyclin dependent kinase 1 (CDK1), mRNA. (1265 bp)
substrate binding site [polypeptide binding]; other site" /db_xref="CDD:270845" misc_feature 552..623 /gene="CDK1" /gene_synonym="CDC2" /note="activation loop (A-loop); other site" /db_xref="CDD:270845" ORIGIN // REFERENCE 1 (bases 1 to 1265) AUTHORS Fujii W, Nishimura T, Kano K, Sugiura K and Naito K. TITLE CDK7 and CCNH are components of CDK-activating kinase and are required for meiotic progression of pig oocytes JOURNAL Biol. Reprod. 85 (6), 1124-1132 (2011) PUBMED 21778139 REMARK GeneRIF: CDK7 and CCNH activate CDC2 by T161 phosphorylation and make up CDK-activating kinase, which is...
Synonym: CDC2
NM_001159304.2 - Sus scrofa (pig) - NCBI
Sus scrofa WEE2 oocyte meiosis inhibiting kinase (WEE2), mRNA. (2045 bp)
inference="alignment:Splign:2.1.0" exon 1592..1853 /gene="WEE2" /gene_synonym="WEE1B" /inference="alignment:Splign:2.1.0" exon 1854..2022 /gene="WEE2" /gene_synonym="WEE1B" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2045) AUTHORS Shimaoka,T., Nishimura,T., Kano,K. and Naito,K. TITLE Analyses of the regulatory mechanism of porcine WEE1B: the phosphorylation sites of porcine WEE1B and mouse WEE1B are different JOURNAL J Reprod Dev 57 (2), 223-228 (2011) PUBMED 21123961 REMARK GeneRIF: results suggest pWEE1B is activated after phosphorylation of the Ser77 residue, which...
Synonym: WEE1B
NM_001097507.2 - Sus scrofa (pig) - NCBI
Gallus gallus ALX homeobox 4 (ALX4), transcript variant 3, mRNA. (5239 bp)
Thomas PD. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 REFERENCE 2 (bases 1 to 5239) AUTHORS Takahashi M, Tamura K, Buscher D, Masuya H, Yonei-Tamura S, Matsumoto K, Naitoh-Matsuo M, Takeuchi J, Ogura K, Shiroishi T, Ogura T and Izpisua Belmonte JC. TITLE The role of Alx-4 in the establishment of anteroposterior polarity during vertebrate limb development JOURNAL Development 125 (22), 4417-4425 (1998) PUBMED 9778501 REMARK Erratum:...
NM_001397959.1 - Gallus gallus (chicken) - NCBI - UCSC
Gallus gallus ALX homeobox 4 (ALX4), transcript variant 2, mRNA. (5253 bp)
Thomas PD. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 REFERENCE 2 (bases 1 to 5253) AUTHORS Takahashi M, Tamura K, Buscher D, Masuya H, Yonei-Tamura S, Matsumoto K, Naitoh-Matsuo M, Takeuchi J, Ogura K, Shiroishi T, Ogura T and Izpisua Belmonte JC. TITLE The role of Alx-4 in the establishment of anteroposterior polarity during vertebrate limb development JOURNAL Development 125 (22), 4417-4425 (1998) PUBMED 9778501 REMARK Erratum:...
NM_001397958.1 - Gallus gallus (chicken) - NCBI - UCSC
Gallus gallus DEAD-box helicase 4 (DDX4), mRNA. (2948 bp)
stem cells to a germ cell fate JOURNAL Dev Biol 330 (1), 73-82 (2009) PUBMED 19324033 REMARK GeneRIF: Thus, our results demonstrate that Vasa can drive ES cell differentiation towards the germ cell lineage, both in vitro and in vivo REFERENCE 7 (bases 1 to 2948) AUTHORS Minematsu T, Harumi T and Naito M. TITLE Germ cell-specific expression of GFP gene induced by chicken vasa homologue (Cvh) promoter in early chicken embryos JOURNAL Mol Reprod Dev 75 (10), 1515-1522 (2008) PUBMED 18324671 REMARK GeneRIF: Cvh promoter provide the basis for for visualization, purification and genetical...
NM_204708.3 - Gallus gallus (chicken) - NCBI - UCSC
Sus scrofa cyclin H (CCNH), mRNA. (972 bp)
Splign:2.1.0" exon 761..872 /gene="CCNH" /inference="alignment:Splign:2.1.0" exon 873..933 /gene="CCNH" /inference="alignment:Splign:2.1.0" exon 934..972 /gene="CCNH" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 972) AUTHORS Fujii W, Nishimura T, Kano K, Sugiura K and Naito K. TITLE CDK7 and CCNH are components of CDK-activating kinase and are required for meiotic progression of pig oocytes JOURNAL Biol. Reprod. 85 (6), 1124-1132 (2011) PUBMED 21778139 REMARK GeneRIF: CDK7 and CCNH activate CDC2 by T161 phosphorylation and make up CDK-activating kinase, which is...
NM_001166313.1 - Sus scrofa (pig) - NCBI
Sus scrofa MOS proto-oncogene, serine/threonine kinase (MOS), mRNA. (1675 bp)
site [polypeptide binding]; other site" /db_xref="CDD:270881" misc_feature order(828..869,882..902) /gene="MOS" /gene_synonym="c-mos; p39-mos" /note="activation loop (A-loop); other site" /db_xref="CDD:270881" ORIGIN // REFERENCE 1 (bases 1 to 1675) AUTHORS Nishimura,T., Shimaoka,T., Kano,K. and Naito,K. TITLE Insufficient amount of Cdc2 and continuous activation of Wee1 B are the cause of meiotic failure in porcine growing oocytes JOURNAL J Reprod Dev 55 (5), 553-557 (2009) PUBMED 19550110 REFERENCE 2 (bases 1 to 1675) AUTHORS Dai,Y., Newman,B. and Moor,R. TITLE Translational regulation of...
Synonym: c-mos; p39-mos
NM_001113219.1 - Sus scrofa (pig) - NCBI
Gallus gallus ALX homeobox 4 (ALX4), transcript variant 1, mRNA. (5479 bp)
Thomas PD. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 REFERENCE 2 (bases 1 to 5479) AUTHORS Takahashi M, Tamura K, Buscher D, Masuya H, Yonei-Tamura S, Matsumoto K, Naitoh-Matsuo M, Takeuchi J, Ogura K, Shiroishi T, Ogura T and Izpisua Belmonte JC. TITLE The role of Alx-4 in the establishment of anteroposterior polarity during vertebrate limb development JOURNAL Development 125 (22), 4417-4425 (1998) PUBMED 9778501 REMARK Erratum:...
NM_204162.2 - Gallus gallus (chicken) - NCBI - UCSC
Danio rerio NELL2 interacting cell ontogeny regulator 1 (nicol1), mRNA. (1098 bp)
E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and Hertzano R. TITLE RFX transcription factors are essential for hearing in mice JOURNAL Nat Commun 6, 8549 (2015) PUBMED 26469318 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1098) AUTHORS Aoki M, Segawa H, Naito M and Okamoto H. TITLE Identification of possible downstream genes required for the extension of peripheral axons in primary sensory neurons JOURNAL Biochem Biophys Res Commun 445 (2), 357-362 (2014) PUBMED 24513284...
Synonym: fj40g07; si:dkeyp-75h12.5; wu:fj40g07
NM_001386636.1 - Danio rerio (zebrafish) - NCBI - UCSC
Sus scrofa speedy/RINGO cell cycle regulator family member A (SPDYA), mRNA. (936 bp)
alignment:Splign:2.1.0" exon 553..847 /gene="SPDYA" /gene_synonym="RINGO; SPDY1" /inference="alignment:Splign:2.1.0" exon 848..936 /gene="SPDYA" /gene_synonym="RINGO; SPDY1" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 936) AUTHORS Kume S, Endo T, Nishimura Y, Kano K and Naito K. TITLE Porcine SPDYA2 (RINGO A2) stimulates CDC2 activity and accelerates meiotic maturation of porcine oocytes JOURNAL Biol. Reprod. 76 (3), 440-447 (2007) PUBMED 17151349 REMARK GeneRIF: pig SPDYA2 has important role in meiotic maturation of porcine oocytes and the rapid degradation of SPDY...
Synonym: RINGO; SPDY1
NM_001025223.1 - Sus scrofa (pig) - NCBI
Mus musculus microRNA 680-3 (Mir680-3), microRNA. (87 bp)
AUTHORS Tarantino C, Paolella G, Cozzuto L, Minopoli G, Pastore L, Parisi S and Russo T. TITLE miRNA 34a, 100, and 137 modulate differentiation of mouse embryonic stem cells JOURNAL FASEB J 24 (9), 3255-3263 (2010) PUBMED 20439489 REFERENCE 2 (bases 1 to 87) AUTHORS Aoi W, Naito Y, Mizushima K, Takanami Y, Kawai Y, Ichikawa H and Yoshikawa T. TITLE The microRNA miR-696 regulates PGC-1{alpha} in mouse skeletal muscle in response to physical activity JOURNAL Am J Physiol Endocrinol Metab 298 (4), E799-E806 (2010) PUBMED 20086200 REFERENCE 3 (bases 1 to 87) AUTHORS Mineno J,...
Synonym: Mirn680-3
NR_030449.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus microRNA 680-1 (Mir680-1), microRNA. (109 bp)
AUTHORS Tarantino C, Paolella G, Cozzuto L, Minopoli G, Pastore L, Parisi S and Russo T. TITLE miRNA 34a, 100, and 137 modulate differentiation of mouse embryonic stem cells JOURNAL FASEB J 24 (9), 3255-3263 (2010) PUBMED 20439489 REFERENCE 3 (bases 1 to 109) AUTHORS Aoi W, Naito Y, Mizushima K, Takanami Y, Kawai Y, Ichikawa H and Yoshikawa T. TITLE The microRNA miR-696 regulates PGC-1{alpha} in mouse skeletal muscle in response to physical activity JOURNAL Am J Physiol Endocrinol Metab 298 (4), E799-E806 (2010) PUBMED 20086200 REFERENCE 4 (bases 1 to 109) AUTHORS Mineno J,...
Synonym: Mirn680-1
NR_030447.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Danio rerio taste receptor, type 2, member 203 (tas2r203), mRNA. (918 bp)
Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Lineage-specific expansions and contractions of the bitter taste receptor gene repertoire in vertebrates JOURNAL Mol Biol Evol 23 (5), 964-972 (2006) PUBMED 16484289 REFERENCE 6 (bases 1 to 918) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech Dev 122 (12), 1310-1321 (2005) PUBMED 16274966 REFERENCE 7 (bases 1 to 918) AUTHORS Pfister P and Rodriguez I. TITLE Olfactory expression of a single and highly variable V1r...
Synonym: T2R1; tas2r1l; tas2r4
NM_001020506.1 - Danio rerio (zebrafish) - NCBI - UCSC
Mus musculus microRNA 680-2 (Mir680-2), microRNA. (110 bp)
AUTHORS Tarantino C, Paolella G, Cozzuto L, Minopoli G, Pastore L, Parisi S and Russo T. TITLE miRNA 34a, 100, and 137 modulate differentiation of mouse embryonic stem cells JOURNAL FASEB J 24 (9), 3255-3263 (2010) PUBMED 20439489 REFERENCE 3 (bases 1 to 110) AUTHORS Aoi W, Naito Y, Mizushima K, Takanami Y, Kawai Y, Ichikawa H and Yoshikawa T. TITLE The microRNA miR-696 regulates PGC-1{alpha} in mouse skeletal muscle in response to physical activity JOURNAL Am J Physiol Endocrinol Metab 298 (4), E799-E806 (2010) PUBMED 20086200 REFERENCE 4 (bases 1 to 110) AUTHORS Mineno J,...
Synonym: Mirn680-2
NR_030448.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus peroxisomal biogenesis factor 11 alpha (Pex11a), transcript variant 2, non-coding RNA. (2175 bp)
aggravated renal interstitial lesions JOURNAL Hypertension 64 (5), 1054-1060 (2014) PUBMED 25113963 REMARK GeneRIF: Pex11a deficiency is associated with a reduced abundance of functional peroxisomes and aggravated renal interstitial lesions. REFERENCE 2 (bases 1 to 2175) AUTHORS Weng H, Ji X, Naito Y, Endo K, Ma X, Takahashi R, Shen C, Hirokawa G, Fukushima Y and Iwai N. TITLE Pex11alpha deficiency impairs peroxisome elongation and division and contributes to nonalcoholic fatty liver in mice JOURNAL Am J Physiol Endocrinol Metab 304 (2), E187-E196 (2013) PUBMED 23169785 REMARK GeneRIF:...
Synonym: PEX11alpha
NR_153403.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Danio rerio taste receptor, type 2, member 200, tandem duplicate 2 (tas2r200.2), mRNA. (963 bp)
Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Lineage-specific expansions and contractions of the bitter taste receptor gene repertoire in vertebrates JOURNAL Mol Biol Evol 23 (5), 964-972 (2006) PUBMED 16484289 REFERENCE 5 (bases 1 to 963) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech Dev 122 (12), 1310-1321 (2005) PUBMED 16274966 REFERENCE 6 (bases 1 to 963) AUTHORS Pfister P and Rodriguez I. TITLE Olfactory expression of a single and highly variable V1r...
Synonym: T2R2; TAS2R1b; tas2r2l
NM_001020505.1 - Danio rerio (zebrafish) - NCBI - UCSC
Solanum lycopersicum Tm-1 protein (Tm-1), mRNA. (2763 bp)
alignment:Splign:2.1.0" exon 2057..2310 /gene="Tm-1" /gene_synonym="Tm-1^GCR237; tm-1^GCR26" /inference="alignment:Splign:2.1.0" exon 2311..2763 /gene="Tm-1" /gene_synonym="Tm-1^GCR237; tm-1^GCR26" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2763) AUTHORS Ishibashi,K., Naito,S., Meshi,T. and Ishikawa,M. TITLE An inhibitory interaction between viral and cellular proteins underlies the resistance of tomato to nonadapted tobamoviruses JOURNAL Proc Natl Acad Sci U S A 106 (21), 8778-8783 (2009) PUBMED 19423673 REMARK GeneRIF: Results suggest that an inhibitory interaction...
Synonym: Tm-1^GCR237; tm-1^GCR26
NM_001247795.2 - Solanum lycopersicum (Lycopersicon esculentum) - NCBI
Sus scrofa cytoplasmic polyadenylation element binding protein 1 (CPEB1), mRNA. (1701 bp)
PUBMED 24983972 REMARK GeneRIF: Aurora kinase A is unlikely to be involved in CPEB1 activating phosphorylation and cyclin B1 mRNA polyadenylation during meiotic maturation of porcine oocytes. Publication Status: Online-Only REFERENCE 2 (bases 1 to 1701) AUTHORS Nishimura Y, Kano K and Naito K. TITLE Porcine CPEB1 is involved in Cyclin B translation and meiotic resumption in porcine oocytes JOURNAL Anim. Sci. J. 81 (4), 444-452 (2010) PUBMED 20662813 REMARK GeneRIF: results suggest the involvement of mammalian CPEB1 in Cyclin B syntheses and meiotic resumption in mammalian oocytes...
NM_001097510.1 - Sus scrofa (pig) - NCBI
Mus musculus caveolae associated 4 (Cavin4), mRNA. (4479 bp)
Am Heart Assoc 8 (15), e012047 (2019) PUBMED 31364493 REMARK GeneRIF: Systems Network Genomic Analysis Reveals Cardioprotective Effect of MURC/Cavin-4 Deletion Against Ischemia/Reperfusion Injury. REFERENCE 3 (bases 1 to 4479) AUTHORS Miyagawa,K., Ogata,T., Ueyama,T., Kasahara,T., Nakanishi,N., Naito,D., Taniguchi,T., Hamaoka,T., Maruyama,N., Nishi,M., Kimura,T., Yamada,H., Aoki,H. and Matoba,S. TITLE Loss of MURC/Cavin-4 induces JNK and MMP-9 activity enhancement in vascular smooth muscle cells and exacerbates abdominal aortic aneurysm JOURNAL Biochem Biophys Res Commun...
Synonym: 2310039E09Rik; Murc
NM_026509.4 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus RecQ mediated genome instability 1 (Rmi1), transcript variant 3, non-coding RNA. (3599 bp)
development and is essential for early embryonic survival JOURNAL Mol Carcinog 50 (2), 80-88 (2011) PUBMED 21229605 REMARK GeneRIF: These results demonstrated a dual-role of RMI1 in embryonic development and tumor suppression. REFERENCE 5 (bases 1 to 3599) AUTHORS Suwa A, Yoshino M, Yamazaki C, Naitou M, Fujikawa R, Matsumoto S, Kurama T, Shimokawa T and Aramori I. TITLE RMI1 deficiency in mice protects from diet and genetic-induced obesity JOURNAL FEBS J 277 (3), 677-686 (2010) PUBMED 20050919 REMARK GeneRIF: results suggest that the regulation of energy balance by RMI1 is attributable to the...
Synonym: 4932432N11Rik
NR_031761.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus double C2 domain alpha (Doc2a), mRNA. (1447 bp)
J.P. TITLE Different spatiotemporal expression of DOC2 genes in the developing rat brain argues for an additional, nonsynaptic role of DOC2B in early development JOURNAL Eur J Neurosci 12 (1), 165-171 (2000) PUBMED 10651871 REFERENCE 5 (bases 1 to 1447) AUTHORS Nagano,F., Orita,S., Sasaki,T., Naito,A., Sakaguchi,G., Maeda,M., Watanabe,T., Kominami,E., Uchiyama,Y. and Takai,Y. TITLE Interaction of Doc2 with tctex-1, a light chain of cytoplasmic dynein. Implication in dynein-dependent vesicle transport JOURNAL J Biol Chem 273 (46), 30065-30068 (1998) PUBMED 9804756 REFERENCE 6 (bases 1 to 1447)...
NM_022937.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Danio rerio dorsal root ganglia homeobox (drgx), mRNA. (864 bp)
AUTHORS Dyer C, Linker C, Graham A and Knight R. TITLE Specification of sensory neurons occurs through diverse developmental programs functioning in the brain and spinal cord JOURNAL Dev Dyn 243 (11), 1429-1439 (2014) PUBMED 25179866 REFERENCE 4 (bases 1 to 864) AUTHORS Aoki M, Segawa H, Naito M and Okamoto H. TITLE Identification of possible downstream genes required for the extension of peripheral axons in primary sensory neurons JOURNAL Biochem Biophys Res Commun 445 (2), 357-362 (2014) PUBMED 24513284 REFERENCE 5 (bases 1 to 864) AUTHORS Dyer C, Blanc E, Hanisch A, Roehl H, Otto GW...
Synonym: prrxl1
NM_001037105.1 - Danio rerio (zebrafish) - NCBI - UCSC
Rattus norvegicus MOS proto-oncogene, serine/threonine kinase (Mos), mRNA. (1308 bp)
REMARK GeneRIF: NGF, by enhancing Mos in late spermatocytes, is one of the intra-testicular factors which adjusts the number of round spermatids that can be supported by Sertoli cells Publication Status: Online-Only REFERENCE 3 (bases 1 to 1308) AUTHORS Nishimura,T., Shimaoka,T., Kano,K. and Naito,K. TITLE Insufficient amount of Cdc2 and continuous activation of Wee1 B are the cause of meiotic failure in porcine growing oocytes JOURNAL J Reprod Dev 55 (5), 553-557 (2009) PUBMED 19550110 REFERENCE 4 (bases 1 to 1308) AUTHORS Ohashi,S., Naito,K., Sugiura,K., Iwamori,N., Goto,S., Naruoka,H. and...
NM_020102.4 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus tribbles pseudokinase 1 (Trib1), mRNA. (1972 bp)
N, Hagos S, Alshahid M, Meyer BF, Morahan G and Dzimiri N. TITLE A common variant association study in ethnic Saudi Arabs reveals novel susceptibility loci for hypertriglyceridemia JOURNAL Clin Genet 91 (3), 371-378 (2017) PUBMED 27599772 REFERENCE 2 (bases 1 to 1972) AUTHORS Satoh T, Kidoya H, Naito H, Yamamoto M, Takemura N, Nakagawa K, Yoshioka Y, Morii E, Takakura N, Takeuchi O and Akira S. TITLE Critical role of Trib1 in differentiation of tissue-resident M2-like macrophages JOURNAL Nature 495 (7442), 524-528 (2013) PUBMED 23515163 REFERENCE 3 (bases 1 to 1972) AUTHORS Dedhia PH, Keeshan...
Synonym: Gig2
NM_023985.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Sus scrofa aurora kinase A (AURKA), mRNA. (1218 bp)
PUBMED 24983972 REMARK GeneRIF: Aurora kinase A is unlikely to be involved in CPEB1 activating phosphorylation and cyclin B1 mRNA polyadenylation during meiotic maturation of porcine oocytes. Publication Status: Online-Only REFERENCE 2 (bases 1 to 1218) AUTHORS Nishimura,Y., Kano,K. and Naito,K. TITLE Porcine CPEB1 is involved in Cyclin B translation and meiotic resumption in porcine oocytes JOURNAL Anim Sci J 81 (4), 444-452 (2010) PUBMED 20662813 REFERENCE 3 (bases 1 to 1218) AUTHORS Nishimura,Y., Endo,T., Kano,K. and Naito,K. TITLE Porcine Aurora A accelerates Cyclin B and Mos synthesis and...
Synonym: ARK-1; STK6
NM_001025225.1 - Sus scrofa (pig) - NCBI
Mus musculus double C2, alpha (Doc2a), transcript variant 7, non-coding RNA. (1875 bp)
V.M., Klumperman,J. and Verhage,M. TITLE Quantification of synapse formation and maintenance in vivo in the absence of synaptic release JOURNAL Neuroscience 126 (1), 115-126 (2004) PUBMED 15145078 REFERENCE 9 (bases 1 to 1875) AUTHORS Sakaguchi,G., Manabe,T., Kobayashi,K., Orita,S., Sasaki,T., Naito,A., Maeda,M., Igarashi,H., Katsuura,G., Nishioka,H., Mizoguchi,A., Itohara,S., Takahashi,T. and Takai,Y. TITLE Doc2alpha is an activity-dependent modulator of excitatory synaptic transmission JOURNAL Eur J Neurosci 11 (12), 4262-4268 (1999) PUBMED 10594652 REFERENCE 10 (bases 1 to 1875) AUTHORS...
NR_178187.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus double C2, alpha (Doc2a), transcript variant 8, non-coding RNA. (2181 bp)
V.M., Klumperman,J. and Verhage,M. TITLE Quantification of synapse formation and maintenance in vivo in the absence of synaptic release JOURNAL Neuroscience 126 (1), 115-126 (2004) PUBMED 15145078 REFERENCE 9 (bases 1 to 2181) AUTHORS Sakaguchi,G., Manabe,T., Kobayashi,K., Orita,S., Sasaki,T., Naito,A., Maeda,M., Igarashi,H., Katsuura,G., Nishioka,H., Mizoguchi,A., Itohara,S., Takahashi,T. and Takai,Y. TITLE Doc2alpha is an activity-dependent modulator of excitatory synaptic transmission JOURNAL Eur J Neurosci 11 (12), 4262-4268 (1999) PUBMED 10594652 REFERENCE 10 (bases 1 to 2181) AUTHORS...
NR_178188.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus microRNA 705 (Mir705), microRNA. (82 bp)
AUTHORS Prosser HM, Koike-Yusa H, Cooper JD, Law FC and Bradley A. TITLE A resource of vectors and ES cells for targeted deletion of microRNAs in mice JOURNAL Nat Biotechnol 29 (9), 840-845 (2011) PUBMED 21822254 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 82) AUTHORS Aoi W, Naito Y, Mizushima K, Takanami Y, Kawai Y, Ichikawa H and Yoshikawa T. TITLE The microRNA miR-696 regulates PGC-1{alpha} in mouse skeletal muscle in response to physical activity JOURNAL Am J Physiol Endocrinol Metab 298 (4), E799-E806 (2010) PUBMED 20086200 REFERENCE 5 (bases 1 to 82) AUTHORS van Rooij...
Synonym: Mirn705; mmu-mir-705
NR_030486.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Danio rerio tubulin polymerization-promoting protein family member 2 (tppp2), mRNA. (3088 bp)
REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 3088) AUTHORS Orosz F. TITLE On the tubulin polymerization promoting proteins of zebrafish JOURNAL Biochem Biophys Res Commun 457 (3), 267-272 (2015) PUBMED 25576359 REFERENCE 5 (bases 1 to 3088) AUTHORS Aoki M, Segawa H, Naito M and Okamoto H. TITLE Identification of possible downstream genes required for the extension of peripheral axons in primary sensory neurons JOURNAL Biochem Biophys Res Commun 445 (2), 357-362 (2014) PUBMED 24513284...
NM_001326439.1 - Danio rerio (zebrafish) - NCBI - UCSC
Rattus norvegicus pregnancy up-regulated nonubiquitous CaM kinase (Pnck), mRNA. (1619 bp)
in generation of autonomous activity. REFERENCE 2 (bases 1 to 1619) AUTHORS Hook,S.S. and Means,A.R. TITLE Ca(2+)/CaM-dependent kinases: from activation to function JOURNAL Annu Rev Pharmacol Toxicol 41, 471-505 (2001) PUBMED 11264466 REMARK Review article REFERENCE 3 (bases 1 to 1619) AUTHORS Naito,Y., Watanabe,Y., Yokokura,H., Sugita,R., Nishio,M. and Hidaka,H. TITLE Isoform-specific activation and structural diversity of calmodulin kinase I JOURNAL J Biol Chem 272 (51), 32704-32708 (1997) PUBMED 9405489 REFERENCE 4 (bases 1 to 1619) AUTHORS Yokokura,H., Terada,O., Naito,Y. and Hidaka,H....
Synonym: Camk1b
NM_017275.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Takifugu rubripes taste receptor, type 1, member 2b (tas1r2b), mRNA. (2451 bp)
alignment:Splign:2.1.0" exon 1198..1401 /gene="tas1r2b" /inference="alignment:Splign:2.1.0" exon 1402..1522 /gene="tas1r2b" /inference="alignment:Splign:2.1.0" exon 1523..2451 /gene="tas1r2b" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2451) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech. Dev. 122 (12), 1310-1321 (2005) PUBMED 16274966...
NM_001105218.1 - Takifugu rubripes (Fugu rubripes) - NCBI
Danio rerio neurofilament medium chain b (nefmb), mRNA. (2713 bp)
analyses of zebrafish miRNA and mRNA expression profiles identify miR-29b and miR-223 as potential regulators of optic nerve regeneration JOURNAL BMC Genomics 16 (1), 591 (2015) PUBMED 26265132 REMARK Publication Status: Online-Only REFERENCE 7 (bases 1 to 2713) AUTHORS Aoki M, Segawa H, Naito M and Okamoto H. TITLE Identification of possible downstream genes required for the extension of peripheral axons in primary sensory neurons JOURNAL Biochem Biophys Res Commun 445 (2), 357-362 (2014) PUBMED 24513284 REFERENCE 8 (bases 1 to 2713) AUTHORS Dee CT, Hirst CS, Shih YH, Tripathi VB, Patient RK...
Synonym: nefm; zgc:158491
NM_001123280.1 - Danio rerio (zebrafish) - NCBI - UCSC
Rattus norvegicus caveolae associated protein 4 (Cavin4), mRNA. (4016 bp)
novel evidence that MURC regulates SOCE by interacting with STIM1 in cardiomyocytes. In addition, we identified a first potential mechanism by which the R140W mutation of MURC may contribute to calcium mishandling and the development of cardiomyopathies. REFERENCE 2 (bases 1 to 4016) AUTHORS Naito,D., Ogata,T., Hamaoka,T., Nakanishi,N., Miyagawa,K., Maruyama,N., Kasahara,T., Taniguchi,T., Nishi,M., Matoba,S. and Ueyama,T. TITLE The coiled-coil domain of MURC/cavin-4 is involved in membrane trafficking of caveolin-3 in cardiomyocytes JOURNAL Am J Physiol Heart Circ Physiol 309 (12), H2127-...
Synonym: RGD1310395
NM_001107931.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Mus musculus solute carrier family 35 (UDP-galactose transporter), member A2 (Slc35a2), transcript variant 9, non-coding RNA. (2616 bp)
Cell Oncol (Dordr) 46 (2), 283-297 (2023) PUBMED 36454514 REMARK GeneRIF: Nucleotide sugar transporter SLC35A2 is involved in promoting hepatocellular carcinoma metastasis by regulating cellular glycosylation. REFERENCE 2 (bases 1 to 2616) AUTHORS Hayashi Y, Ito Y, Yanagiba Y, Kamijima M, Naito H and Nakajima T. TITLE Differences in metabolite burden of di(2-ethylhexyl)phthalate in pregnant and postpartum dams and their offspring in relation to drug-metabolizing enzymes in mice JOURNAL Arch Toxicol 86 (4), 563-569 (2012) PUBMED 22159897 REMARK GeneRIF: DEHP exposure did not influence lipase...
Synonym: Had-1; Had1; Sfc8; Ugalt; UGT
NR_189662.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus solute carrier family 35 (UDP-galactose transporter), member A2 (Slc35a2), transcript variant 10, non-coding RNA. (2274 bp)
Cell Oncol (Dordr) 46 (2), 283-297 (2023) PUBMED 36454514 REMARK GeneRIF: Nucleotide sugar transporter SLC35A2 is involved in promoting hepatocellular carcinoma metastasis by regulating cellular glycosylation. REFERENCE 2 (bases 1 to 2274) AUTHORS Hayashi Y, Ito Y, Yanagiba Y, Kamijima M, Naito H and Nakajima T. TITLE Differences in metabolite burden of di(2-ethylhexyl)phthalate in pregnant and postpartum dams and their offspring in relation to drug-metabolizing enzymes in mice JOURNAL Arch Toxicol 86 (4), 563-569 (2012) PUBMED 22159897 REMARK GeneRIF: DEHP exposure did not influence lipase...
Synonym: Had-1; Had1; Sfc8; Ugalt; UGT
NR_189663.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus solute carrier family 35 (UDP-galactose transporter), member A2 (Slc35a2), transcript variant 11, non-coding RNA. (1982 bp)
Cell Oncol (Dordr) 46 (2), 283-297 (2023) PUBMED 36454514 REMARK GeneRIF: Nucleotide sugar transporter SLC35A2 is involved in promoting hepatocellular carcinoma metastasis by regulating cellular glycosylation. REFERENCE 2 (bases 1 to 1982) AUTHORS Hayashi Y, Ito Y, Yanagiba Y, Kamijima M, Naito H and Nakajima T. TITLE Differences in metabolite burden of di(2-ethylhexyl)phthalate in pregnant and postpartum dams and their offspring in relation to drug-metabolizing enzymes in mice JOURNAL Arch Toxicol 86 (4), 563-569 (2012) PUBMED 22159897 REMARK GeneRIF: DEHP exposure did not influence lipase...
Synonym: Had-1; Had1; Sfc8; Ugalt; UGT
NR_189664.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Danio rerio paralemmin 1b (palm1b), mRNA. (2142 bp)
E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and Hertzano R. TITLE RFX transcription factors are essential for hearing in mice JOURNAL Nat Commun 6, 8549 (2015) PUBMED 26469318 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2142) AUTHORS Aoki M, Segawa H, Naito M and Okamoto H. TITLE Identification of possible downstream genes required for the extension of peripheral axons in primary sensory neurons JOURNAL Biochem. Biophys. Res. Commun. 445 (2), 357-362 (2014) PUBMED 24513284 REFERENCE 4 (bases 1 to 2142) AUTHORS Konzer A, Ruhs A, Braun H, Jungblut B,...
Synonym: zgc:63523
NM_200601.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio serpin peptidase inhibitor, clade I (neuroserpin), member 1 (serpini1), mRNA. (1974 bp)
AUTHORS Kalka M, Markiewicz N, Ptak M, Sone ED, Ozyhar A, Dobryszycki P and Wojtas M. TITLE In vivo and in vitro analysis of starmaker activity in zebrafish otolith biomineralization JOURNAL FASEB J 33 (6), 6877-6886 (2019) PUBMED 30840836 REFERENCE 5 (bases 1 to 1974) AUTHORS Aoki M, Segawa H, Naito M and Okamoto H. TITLE Identification of possible downstream genes required for the extension of peripheral axons in primary sensory neurons JOURNAL Biochem Biophys Res Commun 445 (2), 357-362 (2014) PUBMED 24513284 REFERENCE 6 (bases 1 to 1974) AUTHORS Toro S, Wegner J, Muller M, Westerfield M...
Synonym: serpini1l; si:ch211-167c22.4
NM_001128692.1 - Danio rerio (zebrafish) - NCBI - UCSC
Takifugu rubripes taste 1 receptor member 2 (tas1r2), mRNA. (2538 bp)
tas1r1" /inference="alignment:Splign:2.1.0" exon 1492..1612 /gene="tas1r2" /gene_synonym="tas1r1" /inference="alignment:Splign:2.1.0" exon 1613..2538 /gene="tas1r2" /gene_synonym="tas1r1" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2538) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech. Dev. 122 (12), 1310-1321 (2005) PUBMED 16274966...
Synonym: tas1r1
NM_001097625.1 - Takifugu rubripes (Fugu rubripes) - NCBI

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]