GGRNA | Results

検索語に色がつきます。重なると色が濃く表示されます。

Xenopus tropicalis argonaute 2, RISC catalytic component (ago2), mRNA. (3687 bp)

misc_feature 485..745 /gene="ago2" /gene_synonym="Argonaute2; eif2c2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 773..925 /gene="ago2" /gene_synonym="Argonaute2; eif2c2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 926..1288 /gene="ago2" /gene_synonym="Argonaute2; eif2c2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named...

Synonym: Argonaute2; eif2c2
NM_001004877.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 2, RISC catalytic component (ago2), transcript variant X1, mRNA. (5660 bp)

misc_feature 554..814 /gene="ago2" /gene_synonym="Argonaute2; eif2c2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 842..994 /gene="ago2" /gene_synonym="Argonaute2; eif2c2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 995..1357 /gene="ago2" /gene_synonym="Argonaute2; eif2c2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named...

Synonym: Argonaute2; eif2c2
XM_012964517.3 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X8, mRNA. (6515 bp)

misc_feature 145..534 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 565..717 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 718..1080 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...

XM_004911574.4 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X7, mRNA. (6521 bp)

XM_012957371.3 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X6, mRNA. (6527 bp)

misc_feature 151..540 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 571..723 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 724..1086 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...

XM_012957370.3 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 3, RISC catalytic component (ago3), transcript variant X2, mRNA. (5898 bp)

misc_feature 1162..1446 /gene="ago3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 1474..1626 /gene="ago3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1627..1989 /gene="ago3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...

XM_002936224.5 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 3, RISC catalytic component (ago3), transcript variant X1, mRNA. (5902 bp)

misc_feature 1163..1447 /gene="ago3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 1475..1627 /gene="ago3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1628..1990 /gene="ago3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...

XM_004911571.4 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X4, mRNA. (6587 bp)

misc_feature 217..606 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 637..789 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 790..1152 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...

XM_002938838.5 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X3, mRNA. (6594 bp)

misc_feature 218..607 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 638..790 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 791..1153 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...

XM_012957367.3 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X2, mRNA. (6600 bp)

misc_feature 230..619 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 650..802 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 803..1165 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...

XM_004911573.4 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X1, mRNA. (6607 bp)

misc_feature 231..620 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 651..803 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 804..1166 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...

XM_004911572.4 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

Xenopus tropicalis argonaute 1, RISC catalytic component (ago1), mRNA. (7044 bp)

misc_feature 212..604 /gene="ago1" /gene_synonym="eif2c; eif2c1; gerp95" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 632..784 /gene="ago1" /gene_synonym="eif2c; eif2c1; gerp95" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 785..1147 /gene="ago1" /gene_synonym="eif2c; eif2c1; gerp95" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been...

Synonym: eif2c; eif2c1; gerp95
NM_001317215.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

Data Export:

Debug Info:

0.000 | 0.000 | search_start;
0.084 | 0.084 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?source=Xenopus tropicalis (tropical clawed frog)?to=0&format=json
0.098 | 0.014 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Xenopus tropicalis (tropical clawed frog)?to=0&format=json
0.157 | 0.059 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))%26((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Xenopus tropicalis (tropical clawed frog)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.159 | 0.002 | cgi_end;

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]

Summary:

Results:

Data Export:

Debug Info: