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2024-07-27 17:29:01, GGRNA : RefSeq release 224 (May, 2024)
Summary:
Results:
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Hominidae; Homo. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from AF177340.1, AK075405.1 and AA973123.1. Summary: This gene product belongs to the claudin protein family whose members have been identified as major integral membrane proteins localized exclusively at tight junctions. Claudins are expressed in an organ-specific manner and regulate tissue-specific physiologic properties of tight junctions. This protein is expressed in the intestine. Alternatively spliced transcript variants with different 5' untranslated region...
This record has been curated by NCBI staff. The reference sequence was derived from AK312515.1, AK075405.1 and AA973123.1. On Aug 13, 2020 this sequence version replaced NM_001171095.1. Summary: This gene product belongs to the claudin protein family whose members have been identified as major integral membrane proteins localized exclusively at tight junctions. Claudins are expressed in an organ-specific manner and regulate tissue-specific physiologic properties of tight junctions. This protein is expressed in the intestine. Alternatively spliced transcript variants with different 5'...
was derived from DA743944.1, AK075405.1 and AA973123.1. This sequence is a reference standard in the RefSeqGene project. On Jun 2, 2019 this sequence version replaced NM_020384.3. Summary: This gene product belongs to the claudin protein family whose members have been identified as major integral membrane proteins localized exclusively at tight junctions. Claudins are expressed in an organ-specific manner and regulate tissue-specific physiologic properties of tight junctions. This protein is expressed in the intestine. Alternatively spliced transcript variants with different 5' untranslated...
Hominidae; Homo. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from CV575841.1, AC003688.1 and BC071844.1. On Aug 14, 2020 this sequence version replaced NM_001185023.1. Summary: This gene encodes a member of the claudin family. Claudins are integral membrane proteins and components of tight junction strands. Tight junction strands serve as a physical barrier to prevent solutes and water from passing freely through the paracellular space between epithelial or endothelial cell sheets, and also play critical roles in maintaining...
Synonym: CEPTRL2;
claudin-1; CLDN-7; CPETRL2; Hs.84359
NM_001185023.2 -
Homo sapiens (human) -
NCBI -
UCSC -
RefEx(expression)
Hominidae; Homo. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from AC003688.1, AJ011497.1 and BC071844.1. On Aug 14, 2020 this sequence version replaced NM_001185022.1. Summary: This gene encodes a member of the claudin family. Claudins are integral membrane proteins and components of tight junction strands. Tight junction strands serve as a physical barrier to prevent solutes and water from passing freely through the paracellular space between epithelial or endothelial cell sheets, and also play critical roles in maintaining...
Synonym: CEPTRL2;
claudin-1; CLDN-7; CPETRL2; Hs.84359
NM_001185022.2 -
Homo sapiens (human) -
NCBI -
UCSC -
RefEx(expression)
Hominidae; Homo. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from CV575841.1, AC003688.1 and BC071844.1. On Nov 23, 2018 this sequence version replaced NM_001307.5. Summary: This gene encodes a member of the claudin family. Claudins are integral membrane proteins and components of tight junction strands. Tight junction strands serve as a physical barrier to prevent solutes and water from passing freely through the paracellular space between epithelial or endothelial cell sheets, and also play critical roles in maintaining...
AF358908.1, SRR10915302.2005862.1 [ECO:0000345] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1006 /organism="Canis lupus familiaris" /mol_type="mRNA" /sub_species="familiaris" /db_xref="taxon:9615" /chromosome="6" /map="6" gene 1..1006 /gene="CLDN3" /gene_synonym="Claudin-3" /note="claudin 3" /db_xref="GeneID:403648" /db_xref="VGNC:VGNC:39319" exon 1..1006 /gene="CLDN3" /gene_synonym="Claudin-3" /inference="alignment:Splign:2.1.0" misc_feature 56..58 /gene="CLDN3" /gene_synonym="Claudin-3" /note="upstream in-frame stop codon" CDS 209..865 /gene="CLDN3" /gene_synonym="Claudin...
Synonym:
Claudin-3
NM_001003088.1 -
Canis lupus familiaris (dog) -
NCBI
Murinae; Mus; Mus. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from BY110541.1, AK005088.1 and BB798247.1. On Aug 10, 2010 this sequence version replaced NM_008770.2. Summary: This gene encodes a member of the claudin family. Claudins are integral membrane proteins and components of tight junction strands. Tight junction strands serve as a physical barrier to prevent solutes and water from passing freely through the paracellular space between epithelial or endothelial cell sheets, and also play critical roles in maintaining...
RNAseq introns :: single sample supports all introns SAMN07839603 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..3502 /organism="Pongo abelii" /mol_type="mRNA" /db_xref="taxon:9601" /chromosome="6" /map="6" gene 1..3502 /gene="CLDN12" /gene_synonym="Claudin-12" /note="claudin 12" /db_xref="GeneID:100174503" misc_feature 181..183 /gene="CLDN12" /gene_synonym="Claudin-12" /note="upstream in-frame stop codon" CDS 208..942 /gene="CLDN12" /gene_synonym="Claudin-12" /codon_start=1 /product="claudin-12" /protein_id="NP_001127432.1" /db_xref="GeneID:100174503" /translation...
Synonym:
Claudin-12
NM_001133960.1 -
Pongo abelii (Sumatran orangutan) -
NCBI
CDS 352..993 /gene="cldn3" /gene_synonym="claudin-3; cpe-r2; cpetr2; hrvp1; rvp1" /codon_start=1 /product="claudin-3" /protein_id="NP_001005709.1" /db_xref="GeneID:448229" /db_xref="Xenbase:XB-GENE-972426" /translation="MSMGLEILGVALSIVGWLGTVISCALPMWRVTAFIGNNIVVAQTIWEGLWMNCVVQSTGQMQCKMYDSLLALPQDLQAARALMVISIVIAVLGVLISIIGAKCTNCVQDESAKAKIMIVSGVIFILSGLMTLIPVSWSANTIIRDFYNPLVVDAQKRELGSSMYIGWAASALLMLGGAMLCCSCPPKEKYPTSRVAYSAARSTNPGYDRKDYV" misc_feature 358..891 /gene="cldn3" /gene_synonym="claudin-3; cpe-r2; cpetr2; hrvp1; rvp1" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db...
Synonym:
claudin-3; cpe-r2; cpetr2; hrvp1; rvp1
NM_001005709.1 -
Xenopus tropicalis (tropical clawed frog) -
NCBI
AF358907.1, SRR10915301.2076305.1 [ECO:0000345] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..953 /organism="Canis lupus familiaris" /mol_type="mRNA" /sub_species="familiaris" /db_xref="taxon:9615" /chromosome="X" /map="X" gene 1..953 /gene="CLDN2" /gene_synonym="Claudin-2" /note="claudin 2" /db_xref="GeneID:403649" /db_xref="VGNC:VGNC:39316" exon 1..953 /gene="CLDN2" /gene_synonym="Claudin-2" /inference="alignment:Splign:2.1.0" CDS 59..751 /gene="CLDN2" /gene_synonym="Claudin-2" /note="localizes to tight junctions; integral membrane protein claudin-2" /codon_start=1 /product="...
Synonym:
Claudin-2
NM_001003089.1 -
Canis lupus familiaris (dog) -
NCBI
gene="cldn5" /gene_synonym="awal; bec1; claudin-5; cpetrl1; tmvcf" /codon_start=1 /product="claudin-5" /protein_id="NP_001006707.1" /db_xref="GeneID:448343" /db_xref="Xenbase:XB-GENE-976044" /translation="MASAAIEILGLSLSILGWVGVILACGLPMWQVSAFIENNIVVAQIIWEGLWMSCVVQSTGQMQCKVYDSILALSQELQAGRALTVMASIVGLIGLLVTIVGAKCTNCLQGNSAKGRVLLAGGVIYILCGILVLIPLCWIANIIITEFYDPRVPASQKREMGAALYVGWAATALLLLGGSLLCCSFAMKDGISNLPVKYSAPRMPTSNGDYDKKNYV" misc_feature 179..676 /gene="cldn5" /gene_synonym="awal; bec1; claudin-5; cpetrl1; tmvcf" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD...
Synonym: awal; bec1;
claudin-5; cpetrl1; tmvcf
NM_001006706.1 -
Xenopus tropicalis (tropical clawed frog) -
NCBI
LOCUS NM_001076123 3522 bp mRNA linear MAM 03-APR-2024 DEFINITION Bos taurus claudin 12 (CLDN12), mRNA. ACCESSION NM_001076123 XM_582151 VERSION NM_001076123.2 KEYWORDS RefSeq. SOURCE Bos taurus (cattle) ORGANISM Bos taurus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from NKLS022.1. On Feb 8, 2024 this sequence version replaced NM_001076123.1. ##...
Synonym:
claudin-12
NM_001076123.2 -
Bos taurus (cattle) -
NCBI
gene="Cldn19" /gene_synonym="claudin-19" /note="upstream in-frame stop codon" CDS 85..720 /gene="Cldn19" /gene_synonym="claudin-19" /codon_start=1 /product="claudin-19" /protein_id="NP_001008514.1" /db_xref="GeneID:298487" /db_xref="RGD:1305000" /translation="MANSGLQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCKLYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPTAKGRVAISGGALFLLAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWASAGLAILGGSFLCCTCPEPERANSIPQPYRSGPSTAAREYV" misc_feature 94..630 /gene="Cldn19" /gene_synonym="claudin-19" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin;...
xref="RGD:1305000" CDS 426..1100 /gene="Cldn19" /gene_synonym="claudin-19" /codon_start=1 /product="claudin-19 isoform X1" /protein_id="XP_006238818.1" /db_xref="GeneID:298487" /db_xref="RGD:1305000" /translation="MANSGLQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCKLYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPTAKGRVAISGGALFLLAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWASAGLAILGGSFLCCTCPEPERANSIPQPYRSGPSTAAREPVVKLSTSVKGPLGV" misc_feature 435..971 /gene="Cldn19" /gene_synonym="claudin-19" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919"...
misc_feature 257..319 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /note="propagated from UniProtKB/Swiss-Prot (Q9CQX5.1); transmembrane region" misc_feature 293..946 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" misc_feature 368..370 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /note="N-linked (GlcNAc...) asparagine. /evidence=ECO:0000269|PubMed:19349973; propagated from UniProtKB/Swiss-Prot (Q9CQX5.1); glycosylation site" misc_feature...
misc_feature 272..334 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /note="propagated from UniProtKB/Swiss-Prot (Q9CQX5.1); transmembrane region" misc_feature 308..961 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" misc_feature 383..385 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /note="N-linked (GlcNAc...) asparagine. /evidence=ECO:0000269|PubMed:19349973; propagated from UniProtKB/Swiss-Prot (Q9CQX5.1); glycosylation site" misc_feature...
gene="CLDN3" /gene_synonym="claudin-3" /inference="alignment:Splign:2.1.0" CDS 87..731 /gene="CLDN3" /gene_synonym="claudin-3" /codon_start=1 /product="claudin-3" /protein_id="NP_989533.1" /db_xref="CGNC:49012" /db_xref="GeneID:374029" /translation="MSMGLEIGGVALSVLGWLCSIICCALPMWRVTAFIGNNIVTAQIIWEGLWMNCVVQSTGQMQCKVYDSMLALPQDLQAARALLVVAIVLAVLGLMVAIVGAQCTRCVEDETTKAKITIVSGVIFLLSGIMTLIPVSWSANTIIRDFYNPLVIDAQKRELGTSLYVGWAASALLLFGGALLCCSCPPKDERYAPSKVAYSAPRSAVTSYDKRNYV" misc_feature 93..593 /gene="CLDN3" /gene_synonym="claudin-3" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /...
Synonym:
claudin-3
NM_204202.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
CDS 272..964 /gene="CLDN2" /gene_synonym="claudin-2; OAZON" /codon_start=1 /product="claudin-2 isoform X1" /protein_id="XP_054184059.1" /db_xref="GeneID:9075" /db_xref="HGNC:HGNC:2041" /db_xref="MIM:300520" /translation="MASLGLQLVGYILGLLGLLGTLVAMLLPSWKTSSYVGASIVTAVGFSKGLWMECATHSTGITQCDIYSTLLGLPADIQAAQAMMVTSSAISSLACIISVVGMRCTVFCQESRAKDRVAVAGGVFFILGGLLGFIPVAWNLHGILRDFYSPLVPDSMKFEIGEALYLGIISSLFSLIAGIILCFSCSSQRNRSNYYDAYQAQPLATRSSPRPGQPPKVKSEFNSYSLTGYV" misc_feature 338..814 /gene="CLDN2" /gene_synonym="claudin-2; OAZON" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_...
CDS 492..1184 /gene="CLDN2" /gene_synonym="claudin-2; OAZON" /codon_start=1 /product="claudin-2 isoform X1" /protein_id="XP_054184060.1" /db_xref="GeneID:9075" /db_xref="HGNC:HGNC:2041" /db_xref="MIM:300520" /translation="MASLGLQLVGYILGLLGLLGTLVAMLLPSWKTSSYVGASIVTAVGFSKGLWMECATHSTGITQCDIYSTLLGLPADIQAAQAMMVTSSAISSLACIISVVGMRCTVFCQESRAKDRVAVAGGVFFILGGLLGFIPVAWNLHGILRDFYSPLVPDSMKFEIGEALYLGIISSLFSLIAGIILCFSCSSQRNRSNYYDAYQAQPLATRSSPRPGQPPKVKSEFNSYSLTGYV" misc_feature 558..1034 /gene="CLDN2" /gene_synonym="claudin-2; OAZON" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_...
variant 2" /codon_start=1 /product="claudin-10 isoform 2 precursor" /protein_id="NP_001264697.1" /db_xref="CGNC:13756" /db_xref="GeneID:418790" /translation="MASTSAEIVAFLLTISGWVLVSSTLPTDYWKVSSIDGTVITTATFWANLWKTCVTDSTGVSNCKDFPSMLALDARIACLAGLIFILCGLCSMTGCSLYAHRITSEFFDPSFVAQKYELGAALFIGWAGASLCIIGGSIFCFSIAENSKSPRRAYAYNGAASVMSSRTKIHNSVPDKTSPKHFDKNAYV" sig_peptide 11..79 /gene="CLDN10" /gene_synonym="claudin-10" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 29..427 /gene="CLDN10" /gene_synonym="claudin-10" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin;...
Synonym:
claudin-10
NM_001277768.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /codon_start=1 /product="claudin domain-containing protein 1 isoform X1" /protein_id="XP_011244188.1" /db_xref="GeneID:224250" /db_xref="MGI:MGI:2447860" /translation="MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPIQENSSDSNKIAWEDFLGDEADEKTYNDVLFRYNGSLGLWRRCITIPKNTHWYAPPERTESFDVVTKCMSFTLNEQFMEKYVDPGNHNSGIDLLRTCLCTLGSVSCYVAGIELLHQKVELPKDVSGEFGWSFCLACVSAPLQFMAAALFIWAAHTNRKEYTLMKAYRVA" misc_feature <627..809 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_...
protein 1; claudin 25" /codon_start=1 /product="claudin domain-containing protein 1 isoform 2" /protein_id="NP_001239379.1" /db_xref="GeneID:224250" /db_xref="MGI:MGI:2447860" /translation="MGGDRLENKTSVSVASWSSLNARMDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPIQENSSDSNKIAWEDFLGDEADEKTYNDVLFRYNGSLGLWRRCITIPKNTHWYAPPERTESFDVVTKCMSFTLNEQFMEKYVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTLATGILHLLAGLCTLGSVSCYVAGIELLHQKVELPKDVSGEFGWSFCLACVSAPLQFMAAALFIWAAHTNRKEYTLMKAYRVA" misc_feature 286..939 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /note="PMP-22/EMP/MP20/Claudin family; Region...
gene_synonym="claudin-10" /inference="alignment:Splign:2.1.0" CDS 123..659 /gene="CLDN10" /gene_synonym="claudin-10" /note="isoform 3 is encoded by transcript variant 3" /codon_start=1 /product="claudin-10 isoform 3" /protein_id="NP_001264698.1" /db_xref="CGNC:13756" /db_xref="GeneID:418790" /translation="MNCAGNALGAFHCRPHLTIFKVEGYIQACRGLMISAVCLGFFGSVFGLVGMKCTKIGGSDQNKARIACLAGLIFILCGLCSMTGCSLYAHRITSEFFDPSFVAQKYELGAALFIGWAGASLCIIGGSIFCFSIAENSKSPRRAYAYNGAASVMSSRTKIHNSVPDKTSPKHFDKNAYV" misc_feature <180..509 /gene="CLDN10" /gene_synonym="claudin-10" /note="PMP-22/EMP/MP20/Claudin family; Region:...
Synonym:
claudin-10
NM_001277769.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS XM_009446623 1873 bp mRNA linear PRI 13-MAR-2024 DEFINITION PREDICTED: Pan troglodytes claudin 11 (CLDN11), transcript variant X1, mRNA. ACCESSION XM_009446623 VERSION XM_009446623.5 DBLINK BioProject: PRJNA945513 KEYWORDS RefSeq. SOURCE Pan troglodytes (chimpanzee) ORGANISM Pan troglodytes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086015)...
Synonym:
claudin-11
XM_009446623.5 -
Pan troglodytes (chimpanzee) -
NCBI
variant 3; claudin domain-containing protein 1; claudin 25" /codon_start=1 /product="claudin domain-containing protein 1 isoform 3" /protein_id="NP_001239380.1" /db_xref="GeneID:224250" /db_xref="MGI:MGI:2447860" /translation="MGGDRLENKTSVSVASWSSLNARMDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPIQENSSDSNKIAWEDFLGDEADEKTYNDVLFRYNGSLGLWRRCITIPKNTHWYAPPERTESFDVVTKCMSFTLNEQFMEKYVDPGNHNSGIDLLRTCLCTLGSVSCYVAGIELLHQKVELPKDVSGEFGWSFCLACVSAPLQFMAAALFIWAAHTNRKEYTLMKAYRVA" misc_feature <616..798 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_...
product="claudin-10 isoform 1 precursor" /protein_id="NP_001264696.1" /db_xref="CGNC:13756" /db_xref="GeneID:418790" /translation="MASTSAEIVAFLLTISGWVLVSSTLPTDYWKVSSIDGTVITTATFWANLWKTCVTDSTGVSNCKDFPSMLALDGYIQACRGLMISAVCLGFFGSVFGLVGMKCTKIGGSDQNKARIACLAGLIFILCGLCSMTGCSLYAHRITSEFFDPSFVAQKYELGAALFIGWAGASLCIIGGSIFCFSIAENSKSPRRAYAYNGAASVMSSRTKIHNSVPDKTSPKHFDKNAYV" sig_peptide 24..92 /gene="CLDN10" /gene_synonym="claudin-10" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 42..560 /gene="CLDN10" /gene_synonym="claudin-10" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_...
Synonym:
claudin-10
NM_001277767.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
Annotation Date :: 02/27/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3560 /organism="Pongo abelii" /mol_type="mRNA" /isolate="AG06213" /db_xref="taxon:9601" /chromosome="6" /sex="male" /tissue_type="fibroblast" gene 1..3560 /gene="CLDN12" /gene_synonym="Claudin-12" /note="claudin 12; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 107 long SRA reads, 9 Proteins" /db_xref="GeneID:100174503" CDS 278..1012 /gene="CLDN12" /gene_synonym="Claudin-12" /codon_start=1 /product="claudin...
Synonym:
Claudin-12
XM_054559084.2 -
Pongo abelii (Sumatran orangutan) -
NCBI
08Rik; claudin-25; Cldn25" /inference="alignment:Splign:2.1.0" exon 486..596 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /inference="alignment:Splign:2.1.0" exon 597..734 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /inference="alignment:Splign:2.1.0" exon 735..2143 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2143) AUTHORS Ohnishi M, Ochiai H, Matsuoka K, Akagi M, Nakayama Y, Shima A, Uda A, Matsuoka H, Kamishikiryo J, Michihara A and Inoue A. TITLE Claudin domain...
claudin 16 (Cldn16), mRNA. ACCESSION NM_053241 VERSION NM_053241.5 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from AK085268.1 and AK085333.1. On Aug 11, 2010 this sequence version replaced NM_053241.4. Summary: This gene encodes a member of the claudin family. Claudins...
exon 176..485 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /inference="alignment:Splign:2.1.0" exon 486..596 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /inference="alignment:Splign:2.1.0" exon 597..2005 /gene="Cldnd1" /gene_synonym="1110019C08Rik; claudin-25; Cldn25" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2005) AUTHORS Ohnishi M, Ochiai H, Matsuoka K, Akagi M, Nakayama Y, Shima A, Uda A, Matsuoka H, Kamishikiryo J, Michihara A and Inoue A. TITLE Claudin domain containing 1 contributing to endothelial cell adhesion...
synonym="cb388; claudin7; cldn7; fd19f08; wu:fd19f08" /note="claudin-like protein ZF4A22; claudin-7" /codon_start=1 /product="claudin-7-B" /protein_id="NP_571712.1" /db_xref="GeneID:60635" /db_xref="ZFIN:ZDB-GENE-001103-5" /translation="MAHKGLQLLGFTLSLLGLIGLIIGTIMPQWKMSAYVGDNIITAIAMYQGLWMSCAYQSTGQQQCKVYDSVLQLDSALQATRALMVVAILLTVAGLGVASMGMKCTNCGGDDKVKKSRIAMTGGIILSVGALCSIVACGWFTSQIIRDFYNPFTPVNTKYEFGAAIFIAWAGAFLDIMGGGMLASSCSKGQSSPNYPKSSRPVKSSRPPSSSKEYV" misc_feature 190..726 /gene="cldn7b" /gene_synonym="cb388; claudin7; cldn7; fd19f08; wu:fd19f08" /note="PMP-22/EMP/MP20/Claudin family; Region:...
Synonym: cb388;
claudin7; cldn7; fd19f08; wu:fd19f08
NM_131637.2 -
Danio rerio (zebrafish) -
NCBI -
UCSC
sample supports all introns SAMN00739092, SAMN00774075 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1765 /organism="Ictalurus punctatus" /mol_type="mRNA" /db_xref="taxon:7998" /chromosome="17" /map="17" gene 1..1765 /gene="cldn15lb" /gene_synonym="Claudin-10; CLDN10; CLDN26" /note="claudin 15-like b" /db_xref="GeneID:108278410" exon 1..879 /gene="cldn15lb" /gene_synonym="Claudin-10; CLDN10; CLDN26" /inference="alignment:Splign:2.1.0" misc_feature 810..812 /gene="cldn15lb" /gene_synonym="Claudin-10; CLDN10; CLDN26" /note="upstream in-frame stop codon" exon...
Synonym:
Claudin-10; CLDN10; CLDN26
NM_001329305.1 -
Ictalurus punctatus (channel catfish) -
NCBI
Gm16492; Gm513" /note="claudin 21, pseudogene; claudin 25, pseudogene" /codon_start=1 /product="putative claudin-25" /protein_id="NP_001371194.1" /db_xref="GeneID:100042785" /db_xref="MGI:MGI:3642767" /translation="MACSFRGRVQLGGLLLSVLGWVCSCVTTVLPQWKTLTLDLNEMETWVSGLWEACVNQEEAGTVCKAFESFLSLPQELQVARILMVASHGLGLLGLLLSSCGLECFRFHRPGGVFKTRLCLLGGTLEASASATTLFPVSWVAYATFQDFWDDSIPEIVPRWEFGDALFLGWAAGLFLAVGGLLLIFSACLENEDGSSSWMADATAPQACAPVEEEFDGSFHLTPRPVNQVI" misc_feature 124..597 /gene="Cldn25" /gene_synonym="Cldn21; Cldn21-ps; Cldn25-ps; Gm16492; Gm513" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_...
Synonym: Cldn21; Cldn21-ps; Cldn25-ps; Gm16492; Gm513
NM_001384265.1 -
Mus musculus (house mouse) -
NCBI -
UCSC -
RefEx(expression)
gene="Cldn4" /note="upstream in-frame stop codon" CDS 192..824 /gene="Cldn4" /codon_start=1 /product="claudin-4" /protein_id="NP_001012022.1" /db_xref="GeneID:304407" /db_xref="RGD:1307932" /translation="MASMGLQVLGISLAVLGWLGVILSCSLPMWRVTAFIGSNIVTAQTSWEGLWMNCVVQSTGQMQCKMYDSMLALPQDLQAARALMVISIIVGALGMLLSVVGGKCTNCMEDETVKAKVMITAGAVFIVASMLIMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWAASGLLLLGGGLLCCNCPPRRNEKPYSAKYSAARSVPASNYV" misc_feature 201..701 /gene="Cldn4" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN // REFERENCE 1 (bases 1 to 1824) AUTHORS Ren Q,...
musculus claudin 17 (Cldn17), mRNA. ACCESSION NM_181490 VERSION NM_181490.3 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from AK048287.1. On Apr 5, 2007 this sequence version replaced NM_181490.2. Summary: This gene encodes a member of the claudin family. Claudins are...
Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from CH466554.1. On Dec 14, 2007 this sequence version replaced XM_001473536.1. Summary: This gene encodes a member of the claudin family. Claudins are integral membrane proteins and components of tight junction strands. Tight junction strands serve as a physical barrier to prevent solutes and water from passing freely through the paracellular space between epithelial or endothelial cell sheets, and also play critical roles in...
Muridae; Murinae; Mus; Mus. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from CH466633.1. On or before Oct 13, 2007 this sequence version replaced XM_904536.1, XM_888581.1. Summary: This gene encodes a member of the claudin family. Claudins are integral membrane proteins and components of tight junction strands. Tight junction strands serve as a physical barrier to prevent solutes and water from passing freely through the paracellular space between epithelial or endothelial cell sheets, and also play critical roles in...
codon_start=1 /product="claudin-4-like" /protein_id="XP_058489448.1" /db_xref="GeneID:131462347" /translation="MVAAGLQILGIALCIIGWIGAIVTCALPQWKVTAFVGQNIVTAQTTWEGIWMTCVVQSTGQMQCKVYDSMLALSRDLQAARALIIVSILIGIIGILLSIAGGKCTNCVEDEAAKAKISITSGIIFIIAGVLCLIPVSWTANTIINNFYNPLMVNPQKKELGAMVSQGIQIIGISMSLIGWLMVVVVCALPMWKVTAFIGANIITAQTIWQGMWMNCVVQSTGQMQCKVYDSMLALSQDLQAARAMIIISILTGIFGVVLSVAGGKCTNCIEDERAKAKTCILAGVLFIVSGVLCLIPVSWSANTIIRNFYNPMVINAQRYELGAALYIGWAASALLLMGGGLLCWNCPPKHQQHSHYVPKFTPVKSMSTSREYV" misc_feature 124..597 /gene="LOC131462347" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin;...
XM_058633465.1 -
Solea solea (common sole) -
NCBI
codon_start=1 /product="claudin-3-like isoform X2" /protein_id="XP_058854084.1" /db_xref="GeneID:117429232" /translation="MYSAGLEILGIALSVIGWLGSMVACILPMWKVAAFIGQNIVVAQVIWEGLWMNCVVQSTGQMQCKVYDSLLGLPEDLQAARAMTIVSILLAIVGIMVFVAGAKCTNCMEDEARKPKITISSGVIFIISGMLQLIPVSWSANVITMDFYEPLLGDSQKREMASVGIEILGVVLAVVGWIGSIVACTLPMWRVTAFIGVSIVTSQIMWEGIWMTCVVQSTGQMQCKIYDSLLALPQDLQAARALEVISIILGLLAILISIMGAKCTNCIEDQGAKAKVMIVSGVMFILASLMQLIPVSWSANTIIRDFYNPLVPESSKREMGSSLFIGWAAASLLLFGGAILCCSCPPKETKYVPSRMAYSTAKSAAPSGYDRKDYV" misc_feature 236..676 /gene="LOC117429232" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_...
XM_058998101.1 -
Acipenser ruthenus (sterlet) -
NCBI
stop codon" CDS 441..1100 /gene="Cldn3" /note="RVP1; ventral prostate.1 protein" /codon_start=1 /product="claudin-3" /protein_id="NP_113888.2" /db_xref="GeneID:65130" /db_xref="RGD:68425" /translation="MSMGLEITGTSLAVLGWLCTIVCCALPMWRVSAFIGSSIITAQITWEGLWMNCVVQSTGQMQCKMYDSLLALPQDLQAARALIVVSILLAAFGLLVALVGAQCTNCVQDETAKAKITIVAGVLFLLAAVLTLVPVSWSANTIIRDFYNPLVPEAQKREMGTGLYVGWAAAALQLLGGALLCCSCPPREKYAPTKILYSAPRSTGPGTGTGTAYDRKDYV" misc_feature 447..941 /gene="Cldn3" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" misc_feature 465..527 /gene="Cldn3" /note="...
codon_start=1 /product="claudin-4-like" /protein_id="XP_058854088.1" /db_xref="GeneID:117964231" /translation="MMASLGLQVLGIVLAVIGWIGTIVICALPMWKVTAFIGSNIITSEVVWEGPWMTCLVQGTGQMVCDTYDTVLGIPQDLQAGQILVVIAVFLAIIGLTMSFAGGKFTNCMEDESTKTKICIVSGIIFIIAGVLTMIPICWTANTVISDFYNPLIHDTKKQKSILMASVGIQILGIALAIIGWIGTIIICALPMWKVTAFIGSNIVTSQTIWEGLWMNCVVQSTGQMQCKVYDSMLALPQDLQAARALVVIALLVALFALLLSVVGGKCTNCVEDESTKAKICIVSGIIFIIAGVLTMIPVCWSANTIIRDFYNPLLTDAQRRELGASLYIGWGAAGLLILGGGLLCCSCPPRENQPYSTKYSAARSTATSKAYV" misc_feature 60..515 /gene="LOC117964231" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /...
XM_058998105.1 -
Acipenser ruthenus (sterlet) -
NCBI
codon_start=1 /product="claudin-4-like" /protein_id="XP_058857334.1" /db_xref="GeneID:131701712" /translation="MVSVGLQVLGIALAVIGCIGTIVMCALPMWKVTAFIGSNIVTSQIFWEGLWMNCVVQSTGQMQCDTYDSLLALPQDLQAGQVLAVIAILVAVIGLMMSIVGGKCTNCVEDESTKAKICIVSGIVLIIAGVLTMIPVCWSANIIIRDFYNPLLTDAQRRESISMASVGIEILGIALAMTGWIGTIIICTLPMWKVTAFIGSNIVTSQTIWEGLWMNCVVQSTGQMQCKVYDSMLALPQDLQAARALVVIAILVALFALLLSAVGGKCTNCVEDESTKAKICIVSGIIFIIAGVLIMIPVCWSANTIIRDFYNPLLNDAQRRELGASLYIGWGAAALLLLGGGLLCCSCPPRYGHSYSAKYSAPRSGAVEKAFV" misc_feature 1836..2276 /gene="LOC131701712" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin;...
XM_059001351.1 -
Acipenser ruthenus (sterlet) -
NCBI
codon_start=1 /product="claudin-4-like" /protein_id="XP_058274360.1" /db_xref="GeneID:131370849" /translation="MVSAGLQMLGTALAIIGWIMTIVICALPMWKVTAFIGNNIVTAQITWEGIWMSCVVQSTGQMQCKVYDSMLALSSDLQAARALCVISILIGIFGILLAIAGGKCTNCVEDESSKAKVGIASGVAFIVSGILCLIPVCWTANTIIRDFYNPLILSAQKYEIGASLYIGWAFIGILTAFLGWLGVIVACCLPQWRVTAFIGANIVTAQIIWEGIWMTCAVQSTGQMQCKIYDSMLALTADLQAARAMIIISILAGIIGIMASIAGGKCTNCIENSRAKAMACIVAGVCFIIAGVLCLIPVSWTAQSIIAEFYNPLMTDAQRRELGTSLYIGWAAAGLMLMGGILLCLNCPPNEQRIYNPKYTSTRLTPISREYV" misc_feature 106..600 /gene="LOC131370849" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /...
XM_058418377.1 -
Hemibagrus wyckioides -
NCBI
codon_start=1 /product="claudin-4-like" /protein_id="XP_058271569.1" /db_xref="GeneID:131369125" /translation="MVSAGMQMLGAALGVIGWIGVIVVCALPMWRVTAFIGNNIVTSQIQWEGIWMNCVVQSTGQMQCKVYDSMLALSSDLQAARALTVISIVVGIMGILLAMAGGKCTNCIEDEKSKGKVAVVAGIIFIISGVLCLIPVCWTAQTVIRDFYNPLVNQAQKRELAKMVSQGLQILGVLLSMTGWIGTIVTCALPMWRVTAFIGANIVTAQIIWEGLWMNCVVQSTGQMQCKVYDSLLALPQDLQAARAMVVISIIVGIFGVLMAVVGGKCTNCMEDESAKAKACIVSGVIFLIAAFLILIPVSWSAQTLIRDFYNPLVIEAQRRELGASLYIGWGSGALLLLGGGLLCWNCPPKENQPYTAAKFAPARSLSPGMNYV" misc_feature 98..538 /gene="LOC131369125" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /...
XM_058415586.1 -
Hemibagrus wyckioides -
NCBI
codon_start=1 /product="claudin-4-like" /protein_id="XP_058272077.1" /db_xref="GeneID:131369446" /translation="MVSQNCQILGLVLALIGFVGTIIICGLPAWKMTAFIGANIVTFQYYWEGLWMDCVIQTTGQMQCKVYDSMLILPIHLQAARALIIVALVFGIIGIIATIMGGKCTNFVQDENAKARIAIASGIVFIITGILVLIPVCWTTNAVIREFYNPTIPDGQKKELGPCLYIGIYGKMVSQKCQILGLILALIGFVGTIVICGLPAWKMTAFIGANIVTFQYYWEGLWMDCVVQMTGQMQCKVYDSMLILPIHLQAARALIIVALVFGIIGIIVTVMGGKCTNFVQDENAKARIAIASGIVFIITGILVLIPVCWTTNAVIREFYNPTIPDGQKKELGPCLYIGFGSAALLIAGGALLCSSCPPNDEPSYHVKYSPAKSTMSSNKVYV" misc_feature 49..531 /gene="LOC131369446" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin;...
XM_058416094.1 -
Hemibagrus wyckioides -
NCBI
gene="CLDN5" /note="claudin 5" /db_xref="CGNC:49011" /db_xref="GeneID:374028" exon 1..1752 /gene="CLDN5" /inference="alignment:Splign:2.1.0" CDS 90..740 /gene="CLDN5" /codon_start=1 /product="claudin-5" /protein_id="NP_989532.1" /db_xref="CGNC:49011" /db_xref="GeneID:374028" /translation="MASAAVEILGLGLGILGWVGVILACGLPMWQVSAFIDVNIVVAQTIWEGLWMNCVVQSTGQMQCKVYDSILALRPEVQAGRALTVIVALLGLVALMVTVVGAQCTNCIRPGKMKSRIVIAGGTIYILCGVLVLVPLCWFANIVISDFYDPSVPPSQKREIGAALYIGWAATALLLFGGCLICCCSCLQRDETSFPVKYSAPRRPTSSGEYDKKNYV" misc_feature 177..629 /gene="CLDN5" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_...
NM_204201.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
codon_start=1 /product="claudin-4-like" /protein_id="XP_058489447.1" /db_xref="GeneID:131462346" /translation="MVSLGRQMLGFALAVIGFLGTIIVCALPMWKVTAFIGANIVTAQVIWEGLWMNCVTQSTGQMQCKIYDSLLALPQDLQAARALVVIAIIVSAFGVIVGIAGGKCTNFVENQNAKAKVAIAAGIIFICAGVLILIPVCWSANTIIRDFYNPIMTNTHRETQRTMASMGMQMAGCALALLGWIGVIVVCGAPMWRVSAFIGNNIVTSQIIWEGIWMNCVVQSTGQMQCKVYDSMLALSADLQAARALTVVSIITGIVGLLIAFAGGKCTNFIAEERAKARASVAAGVVLIISGLLCLIPVCWTAGSIIRNFYSPLLIDAQKRELGASLYIGWGAGALLLLGGGLLCATCPPKEDHPPSVNYLLNKSTNKDTSFRSLTPTKTYI" misc_feature 105..557 /gene="LOC131462346" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin;...
XM_058633464.1 -
Solea solea (common sole) -
NCBI
codon_start=1 /product="claudin-4-like" /protein_id="XP_058483357.1" /db_xref="GeneID:131458340" /translation="MVSFGLEVVGCVLSVLGWMLCIVSCALPMWRVSAFIGANIVTAQVYWEGLWMSCVFQSTGQMQCKVYDSMLALPQDLQAARALTIVSIIVGMVALLISLVGAKCTTCIEDEGAKAKVMASAGGAFIVAALAQLVPVSWSAHTIVIEFYSPLIPSGQKMEIGAALYLGNMSMGLEIVGIALGVIGFIIAIVTCAMPMWKVSAFIGANIITAQTIWEGLWMNCVTQSTGQMQCKIYDSMLALPSELQASRAMTIISIILGVLGVMISIVGAKCTNCIEDEASKAKVMIISGIFFLLAGLLVLIPVSWTASVIVRDFYNPLVIISQRREIGAALYIGWGAAVLLIIGGALLCKSCPPKEKKYQPPRMAYSAPRTTTSAGYDRKDYV" misc_feature 303..821 /gene="LOC131458340" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin...
XM_058627374.1 -
Solea solea (common sole) -
NCBI
codon_start=1 /product="claudin-3-like" /protein_id="XP_058489446.1" /db_xref="GeneID:131462345" /translation="MPSLGLEILGVTLAVLGWMSAIISCALPMWRVSAFIGVNIVTAQITWEGIWMNCVVQSTGQMQCKIHDSMLALTADLQAARALTIISIVLGILGVLVAIMGAKCTNCVDEETAKARVMIAAGVAFILASLTHLIPVSWSAHTIIMEFYNPIIPEAQKREIGAALGRRVSMSVGLELIGISLGILGWIIAIVACALPMWRVTAFIGSNIVTAQIIWEGLWMTCVVQSTGQMQCKVYDSMLALSQDLQAARALTVISILLAILAVLIAIAGAKCTNCIEDEASKSKVMIISGVFFIVSGVMQLIPVSWSANTIIRDFYNPLLTDAQRRELGAALYIGWAAAALLILGGGLLCCSCPPRETRYNPSRMAYSAPRSAGGPALERKDYV" misc_feature 149..628 /gene="LOC131462345" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin...
XM_058633463.1 -
Solea solea (common sole) -
NCBI
Data Export:
下記より最大10000件まで検索結果を取得できます。
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Redirect URI : http://ggrna.dbcls.jp/ja/claudin
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query_string : claudin |
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download :
0.000 | 0.000 | search_start;
0.116 | 0.115 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:claudin)%7C(nt:claudin)%7C(aa:claudin))?to=0&format=json
0.237 | 0.122 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:claudin)%7C(nt:claudin)%7C(aa:claudin))?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.243 | 0.006 | cgi_end;
GGRNA ver.2 by
@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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