GGRNA | Results

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Rattus norvegicus argonaute RISC component 1 (Ago1), transcript variant X5, mRNA. (6611 bp)

misc_feature 177..518 /gene="Ago1" /gene_synonym="Eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(312..314,357..359,399..401,411..413,465..467, 486..488,492..494) /gene="Ago1" /gene_synonym="Eif2c1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_...

Synonym: Eif2c1
XM_039110022.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

PREDICTED: Rattus norvegicus argonaute RISC catalytic component 3 (Ago3), transcript variant X3, mRNA. (14902 bp)

misc_feature 174..515 /gene="Ago3" /gene_synonym="Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(309..311,354..356,396..398,408..410,462..464, 483..485,489..491) /gene="Ago3" /gene_synonym="Eif2c3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_...

Synonym: Eif2c3
XM_039110019.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

PREDICTED: Rattus norvegicus argonaute RISC catalytic component 3 (Ago3), transcript variant X2, mRNA. (21011 bp)

misc_feature 6283..6624 /gene="Ago3" /gene_synonym="Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(6418..6420,6463..6465,6505..6507,6517..6519, 6571..6573,6592..6594,6598..6600) /gene="Ago3" /gene_synonym="Eif2c3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD...

Synonym: Eif2c3
XM_008764024.4 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

PREDICTED: Rattus norvegicus argonaute RISC catalytic component 3 (Ago3), transcript variant X1, mRNA. (21047 bp)

misc_feature 6319..6660 /gene="Ago3" /gene_synonym="Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(6454..6456,6499..6501,6541..6543,6553..6555, 6607..6609,6628..6630,6634..6636) /gene="Ago3" /gene_synonym="Eif2c3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD...

Synonym: Eif2c3
XM_017593400.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

PREDICTED: Rattus norvegicus argonaute RISC component 1 (Ago1), transcript variant X3, mRNA. (6820 bp)

misc_feature 221..373 /gene="Ago1" /gene_synonym="Eif2c1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 374..736 /gene="Ago1" /gene_synonym="Eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order...

Synonym: Eif2c1
XM_017593401.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

PREDICTED: Rattus norvegicus argonaute RISC component 1 (Ago1), transcript variant X2, mRNA. (6836 bp)

misc_feature 228..380 /gene="Ago1" /gene_synonym="Eif2c1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 381..743 /gene="Ago1" /gene_synonym="Eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order...

Synonym: Eif2c1
XM_039110021.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

PREDICTED: Rattus norvegicus argonaute RISC component 4 (Ago4), transcript variant X1, mRNA. (6254 bp)

note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 632..784 /gene="Ago4" /gene_synonym="Eif2c4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 785..1135 /gene="Ago4" /gene_synonym="Eif2c4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...

Synonym: Eif2c4
XM_039109632.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

PREDICTED: Rattus norvegicus argonaute RISC component 1 (Ago1), transcript variant X1, mRNA. (7326 bp)

note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 718..870 /gene="Ago1" /gene_synonym="Eif2c1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 871..1233 /gene="Ago1" /gene_synonym="Eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...

Synonym: Eif2c1
XM_008764025.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

PREDICTED: Rattus norvegicus argonaute RISC catalytic component 2 (Ago2), transcript variant X1, mRNA. (10849 bp)

domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 531..683 /gene="Ago2" /gene_synonym="eIF2C 2; Eif2c2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 684..1046 /gene="Ago2" /gene_synonym="eIF2C 2; Eif2c2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...

Synonym: eIF2C 2; Eif2c2
XM_039080221.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

Rattus norvegicus argonaute RISC component 4 (Ago4), mRNA. (6621 bp)

N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 879..1031 /gene="Ago4" /gene_synonym="Eif2c4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1032..1394 /gene="Ago4" /gene_synonym="Eif2c4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...

Synonym: Eif2c4
NM_001394371.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

Rattus norvegicus argonaute RISC catalytic component 3 (Ago3), mRNA. (3150 bp)

note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 780..932 /gene="Ago3" /gene_synonym="Eif2c3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 933..1295 /gene="Ago3" /gene_synonym="Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...

Synonym: Eif2c3
NM_001271193.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

Rattus norvegicus testis and ovary specific TOPAZ 1 (Topaz1), mRNA. (5971 bp)

exon 1..1169 /gene="Topaz1" /gene_synonym="RGD1563398" /inference="alignment:Splign:2.1.0" misc_feature 905..907 /gene="Topaz1" /gene_synonym="RGD1563398" /note="upstream in-frame stop codon" CDS 953..5905 /gene="Topaz1" /gene_synonym="RGD1563398" /note="testis- and ovary-specific PAZ domain-containing protein 1; testis and ovary specific PAZ domain containing 1" /codon_start=1 /product="protein TOPAZ1" /protein_id="NP_001363842.1" /db_xref="GeneID:301075" /db_xref="RGD:1563398" /translation="...

Synonym: RGD1563398
NM_001376913.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

PREDICTED: Rattus norvegicus dicer 1 ribonuclease III (Dicer1), transcript variant X4, mRNA. (9858 bp)

gene="Dicer1" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2116..2382 /gene="Dicer1" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 2884..3252 /gene="Dicer1" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209" misc_feature order...

XM_039113363.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

PREDICTED: Rattus norvegicus dicer 1 ribonuclease III (Dicer1), transcript variant X5, mRNA. (9944 bp)

gene="Dicer1" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2202..2468 /gene="Dicer1" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 2970..3338 /gene="Dicer1" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209" misc_feature order...

XM_039113364.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

PREDICTED: Rattus norvegicus dicer 1 ribonuclease III (Dicer1), transcript variant X3, mRNA. (9988 bp)

gene="Dicer1" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2246..2512 /gene="Dicer1" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 3014..3382 /gene="Dicer1" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209" misc_feature order...

XM_039113362.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

PREDICTED: Rattus norvegicus dicer 1 ribonuclease III (Dicer1), transcript variant X1, mRNA. (10176 bp)

gene="Dicer1" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2434..2700 /gene="Dicer1" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 3202..3570 /gene="Dicer1" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209" misc_feature order...

XM_039113358.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

Rattus norvegicus piwi-like RNA-mediated gene silencing 4 (Piwil4), mRNA. (3109 bp)

misc_feature 745..1095 /gene="Piwil4" /note="PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the...; Region: PAZ_piwi_like; cd02845" /db_xref="CDD:239211" misc_feature order(880..882,919..921,943..945,955..957,1009..1011, 1054..1056,1060..1062) /gene="Piwil4" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239211" misc_feature 1117..2445 /gene="Piwil4" /note...

NM_001271133.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

PREDICTED: Rattus norvegicus argonaute RISC catalytic component 3 (Ago3), transcript variant X5, mRNA. (16113 bp)

misc_feature <1508..1780 /gene="Ago3" /gene_synonym="Eif2c3" /note="PAZ domain; Region: PAZ; pfam02170" /db_xref="CDD:460472" misc_feature 1859..3136 /gene="Ago3" /gene_synonym="Eif2c3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order...

Synonym: Eif2c3
XM_039110020.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

PREDICTED: Rattus norvegicus piwi-like RNA-mediated gene silencing 4 (Piwil4), transcript variant X1, mRNA. (3265 bp)

misc_feature 900..1250 /gene="Piwil4" /note="PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the...; Region: PAZ_piwi_like; cd02845" /db_xref="CDD:239211" misc_feature order(1035..1037,1074..1076,1098..1100,1110..1112, 1164..1166,1209..1211,1215..1217) /gene="Piwil4" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239211" misc_feature 1272..2600 /gene="...

XM_008765980.4 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

PREDICTED: Rattus norvegicus piwi-like RNA-mediated gene silencing 2 (Piwil2), transcript variant X2, mRNA. (5055 bp)

misc_feature 1161..1304 /gene="Piwil2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1305..1658 /gene="Piwil2" /note="PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the...; Region: PAZ_piwi_like; cd02845" /db_xref="CDD:239211" misc_feature order(1437..1439,1476..1478,1500..1502,1512..1514, 1566..1568,1617..1619,1623..1625) /gene="Piwil2" /note="...

XM_008770828.4 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

PREDICTED: Rattus norvegicus piwi-like RNA-mediated gene silencing 2 (Piwil2), transcript variant X1, mRNA. (5169 bp)

XM_006252271.4 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

Rattus norvegicus argonaute RISC component 1 (Ago1), transcript variant 1, mRNA. (7378 bp)

note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 723..875 /gene="Ago1" /gene_synonym="Eif2c1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 876..1238 /gene="Ago1" /gene_synonym="Eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...

Synonym: Eif2c1
NM_001191765.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

Rattus norvegicus argonaute RISC component 1 (Ago1), transcript variant 1, mRNA. (7378 bp)

Synonym: Eif2c1
NM_001317181.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

Rattus norvegicus piwi-like RNA-mediated gene silencing 2 (Piwil2), mRNA. (4899 bp)

misc_feature 1192..1335 /gene="Piwil2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1336..1689 /gene="Piwil2" /note="PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the...; Region: PAZ_piwi_like; cd02845" /db_xref="CDD:239211" misc_feature order(1468..1470,1507..1509,1531..1533,1543..1545, 1597..1599,1648..1650,1654..1656) /gene="Piwil2" /note="...

NM_001107276.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

Data Export:

Debug Info:

0.000 | 0.000 | search_start;
0.079 | 0.079 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.145 | 0.066 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.148 | 0.003 | cgi_end;

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]

Summary:

Results:

Data Export:

Debug Info: