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2024-11-23 11:53:07, GGRNA : RefSeq release 226 (Sep, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Oryza sativa Japonica Group protein argonaute 17-like (LOC4328436), transcript variant X1, mRNA. (2991 bp)
misc_feature 797..1078 /gene="LOC4328436" /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature 1211..2566 /gene="LOC4328436" /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component...
Synonym: AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545
XM_015768524.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute 11-like (LOC4333733), mRNA. (3109 bp)
gene="LOC4333733" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 924..1058 /gene="LOC4333733" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1059..1412 /gene="LOC4333733" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_...
XM_066308808.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute 13-like (LOC4334374), mRNA. (4134 bp)
misc_feature 609..953 /gene="LOC4334374" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(756..758,801..803,834..836,846..848,900..902, 921..923,927..929) /gene="LOC4334374" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1089..2435 /gene="...
XM_015775890.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group protein argonaute 3-like (LOC4336992), mRNA. (3356 bp)
of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 773..916 /gene="LOC4336992" /gene_synonym="AGO3; OsAGO3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 917..1249 /gene="LOC4336992" /gene_synonym="AGO3; OsAGO3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...
Synonym: AGO3; OsAGO3
NM_001419866.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group protein argonaute 17-like (LOC4328436), mRNA. (3003 bp)
misc_feature 766..906 /gene="LOC4328436" /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 907..1188 /gene="LOC4328436" /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...
Synonym: AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545
NM_001409344.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group protein argonaute 7-like (LOC4333232), mRNA. (3860 bp)
CDD:465134" misc_feature 1429..1578 /gene="LOC4333232" /gene_synonym="AGO7; OsAGO7; SHL4; SHO2; SHOOTLESS4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1615..1983 /gene="LOC4333232" /gene_synonym="AGO7; OsAGO7; SHL4; SHO2; SHOOTLESS4" /note="PAZ domain; Region: PAZ; pfam02170" /db_xref="CDD:460472" misc_feature 2065..3390 /gene="LOC4333232" /gene_synonym="AGO7; OsAGO7; SHL4; SHO2; SHOOTLESS4" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The...
Synonym: AGO7; OsAGO7; SHL4; SHO2; SHOOTLESS4
NM_001418339.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer homolog 2b (LOC136351659), transcript variant X2, mRNA. (4717 bp)
gene="LOC136351659" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350171" misc_feature 1847..2059 /gene="LOC136351659" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 2561..2950 /gene="LOC136351659" /note="PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA...; Region: PAZ_CAF_like; cd02844" /db_xref="CDD:239210" misc_feature...
XM_066303919.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer homolog 3a-like (LOC4324864), transcript variant X2, mRNA. (4553 bp)
gene="LOC4324864" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 1028..1270 /gene="LOC4324864" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 1820..2293 /gene="LOC4324864" /note="PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA...; Region: PAZ_CAF_like; cd02844" /db_xref="CDD:239210" misc_feature order...
XM_066306711.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group protein argonaute 2-like (LOC4336991), mRNA. (3478 bp)
argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 1120..1263 /gene="LOC4336991" /gene_synonym="AGO2; OsAGO2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1342..1632 /gene="LOC4336991" /gene_synonym="AGO2; OsAGO2" /note="PAZ domain; Region: PAZ; pfam02170" /db_xref="CDD:460472" misc_feature 1747..3063 /gene="LOC4336991" /gene_synonym="AGO2; OsAGO2" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-...
Synonym: AGO2; OsAGO2
NM_001419865.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer homolog 1 (LOC4331440), mRNA. (6666 bp)
gene="LOC4331440" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 3137..3400 /gene="LOC4331440" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 4142..4582 /gene="LOC4331440" /note="PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA...; Region: PAZ_CAF_like; cd02844" /db_xref="CDD:239210" misc_feature order...
XM_026023643.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer homolog 3b (LOC4348944), mRNA. (5412 bp)
gene="LOC4348944" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 1953..2213 /gene="LOC4348944" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 2799..3230 /gene="LOC4348944" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cl00301" /db_xref="CDD:469713" misc_feature order...
XM_015757500.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer homolog 2b (LOC136351659), transcript variant X1, mRNA. (4694 bp)
gene="LOC136351659" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 1824..2036 /gene="LOC136351659" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 2538..2927 /gene="LOC136351659" /note="PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA...; Region: PAZ_CAF_like; cd02844" /db_xref="CDD:239210" misc_feature...
XM_066303918.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer homolog 4-like (LOC4336362), transcript variant X1, mRNA. (4685 bp)
other site" /db_xref="CDD:350171" misc_feature 1219..1467 /gene="LOC4336362" /gene_synonym="DCL4; OsDCL4; SHO1" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 2026..2406 /gene="LOC4336362" /gene_synonym="DCL4; OsDCL4; SHO1" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cl00301" /db_xref="CDD:469713" misc_feature...
Synonym: DCL4; OsDCL4; SHO1
XM_015780808.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer homolog 3a-like (LOC4324864), transcript variant X1, mRNA. (5452 bp)
gene="LOC4324864" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 1927..2169 /gene="LOC4324864" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 2719..3192 /gene="LOC4324864" /note="PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA...; Region: PAZ_CAF_like; cd02844" /db_xref="CDD:239210" misc_feature order...
XM_015765976.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group endoribonuclease Dicer homolog 2b-like (LOC4346696), mRNA. (4791 bp)
; other site" /db_xref="CDD:350189" misc_feature 1921..2133 /gene="LOC4346696" /gene_synonym="DCL2B; OsDCL2b" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 2635..3024 /gene="LOC4346696" /gene_synonym="DCL2B; OsDCL2b" /note="PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA...; Region: PAZ_CAF_like; cd02844" /db_xref="CDD:239210" misc_...
Synonym: DCL2B; OsDCL2b
NM_001422728.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group endoribonuclease Dicer homolog 4-like (LOC4336362), mRNA. (5356 bp)
other site" /db_xref="CDD:350171" misc_feature 1875..2123 /gene="LOC4336362" /gene_synonym="DCL4; OsDCL4; SHO1" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 2682..3062 /gene="LOC4336362" /gene_synonym="DCL4; OsDCL4; SHO1" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cl00301" /db_xref="CDD:469713" misc_feature...
Synonym: DCL4; OsDCL4; SHO1
NM_001402397.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group endoribonuclease Dicer homolog 2a-like (LOC4333337), transcript variant 2, mRNA. (4778 bp)
site" /db_xref="CDD:350171" misc_feature 1875..2111 /gene="LOC47" /gene_synonym="DCL2A; OJ1785_A05.30; OsDCL2a" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 2613..3002 /gene="LOC47" /gene_synonym="DCL2A; OJ1785_A05.30; OsDCL2a" /note="PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA...; Region: PAZ_CAF_like; cd02844" /db_xref="CDD:239210" misc_...
Synonym: DCL2A; OJ1785_A05.30; OsDCL2a
NM_001402183.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI

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Debug Info:

Redirect URI : http://ggrna.dbcls.jp/en/os/%22PAZ+domain%22
lang : en | div : | spe : os | query_string : "PAZ domain" | format : html | download : 

0.000 | 0.000 | search_start;
0.275 | 0.275 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Oryza sativa Japonica Group (Japanese rice)?to=0&format=json
0.320 | 0.046 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Oryza sativa Japonica Group (Japanese rice)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.322 | 0.002 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]