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Previous release (v1)
2024-04-29 17:31:22, GGRNA : RefSeq release 222 (Jan, 2024)
Summary:
Results:
Matches are highlighted with green background.
Overlapping matches are dark colored.
misc_feature 403..3006 /gene="LOC100181160" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1597..2874 /gene="LOC100181160" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2008..2010,2020..2022,2056..2067,2074..2076, 2098..2100,2107..2109,2119..2121,2131..2133) /...
XM_018817357.2 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
misc_feature 254..2875 /gene="LOC100181160" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1466..2743 /gene="LOC100181160" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1877..1879,1889..1891,1925..1936,1943..1945, 1967..1969,1976..1978,1988..1990,2000..2002) /...
XM_018817356.2 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_026839457 764 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis protein argonaute 2-like (LOC113475365), transcript variant X4, mRNA. ACCESSION XM_026839457 VERSION XM_026839457.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004190604.1) annotated using gene prediction method...
XM_026839457.1 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_026839456 794 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis protein argonaute 2-like (LOC113475365), transcript variant X3, mRNA. ACCESSION XM_026839456 VERSION XM_026839456.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004190604.1) annotated using gene prediction method...
XM_026839456.1 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_026839455 854 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis protein argonaute 2-like (LOC113475365), transcript variant X2, mRNA. ACCESSION XM_026839455 VERSION XM_026839455.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004190604.1) annotated using gene prediction method...
XM_026839455.1 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
LOCUS XM_026839454 884 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis protein argonaute 2-like (LOC113475365), transcript variant X1, mRNA. ACCESSION XM_026839454 VERSION XM_026839454.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004190604.1) annotated using gene prediction method...
XM_026839454.1 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
misc_feature 992..1141 /gene="LOC100181639" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1103..1501 /gene="LOC100181639" /note="PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the...; Region: PAZ_piwi_like; cd02845" /db_xref="CDD:239211" misc_feature order(1271..1273,1310..1312,1334..1336,1346..1348, 1400..1402,1460..1462,1466..1468) /gene="...
XM_002130541.5 -
Ciona intestinalis (vase tunicate) -
NCBI -
UCSC
Data Export:
Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.
Debug Info:
Redirect URI : http://ggrna.dbcls.jp/ci/Argonaute
lang : en |
div : |
spe : ci |
query_string : Argonaute |
format : html |
download :
0.000 | 0.000 | search_start;
0.079 | 0.079 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?source=Ciona intestinalis (vase tunicate)?to=0&format=json
0.105 | 0.026 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?source=Ciona intestinalis (vase tunicate)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.106 | 0.001 | cgi_end;
GGRNA ver.2 by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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