GGRNA ver.2 Help | Advanced search | Japanese    Previous release (v1)

2024-11-21 21:48:35, GGRNA : RefSeq release 226 (Sep, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Arabidopsis thaliana zinc finger (C3HC4-type RING finger) family protein (VIM5), partial mRNA. (2119 bp)
LOCUS NM_001333805 2119 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana zinc finger (C3HC4-type RING finger) family protein (VIM5), partial mRNA. ACCESSION NM_001333805 VERSION NM_001333805.1 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE COMMENT REVIEWED REFSEQ: This...
Synonym: F12K22.15; F12K22_15; ORTH3; ORTHRUS 3; VARIANT IN METHYLATION 5
NM_001333805.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana Zinc finger (C3HC4-type RING finger) family protein (VIM1), mRNA. (2419 bp)
LOCUS NM_104576 2419 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana Zinc finger (C3HC4-type RING finger) family protein (VIM1), mRNA. ACCESSION NM_104576 VERSION NM_104576.6 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE COMMENT REVIEWED REFSEQ: This record has been...
Synonym: F12K22.14; F12K22_14; ORTH2; ORTHRUS 2; VARIANT IN METHYLATION 1
NM_104576.6 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana Zinc finger (C3HC4-type RING finger) family protein (VIM4), mRNA. (2028 bp)
LOCUS NM_105275 2028 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana Zinc finger (C3HC4-type RING finger) family protein (VIM4), mRNA. ACCESSION NM_105275 VERSION NM_105275.2 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE COMMENT REVIEWED REFSEQ: This record has been...
Synonym: F15E12.8; F15E12_8; ORTH4; ORTHRUS 4; VARIANT IN METHYLATION 4
NM_105275.2 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana Zinc finger (C3HC4-type RING finger) family protein (VIM2), mRNA. (2227 bp)
LOCUS NM_105276 2227 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana Zinc finger (C3HC4-type RING finger) family protein (VIM2), mRNA. ACCESSION NM_105276 VERSION NM_105276.4 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE COMMENT REVIEWED REFSEQ: This record has been...
Synonym: F15E12.5; F15E12_5; ORTH5; ORTHRUS 5; VARIANT IN METHYLATION 2
NM_105276.4 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana zinc finger (C3HC4-type RING finger) family protein (VIM5), partial mRNA. (2107 bp)
LOCUS NM_104575 2107 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana zinc finger (C3HC4-type RING finger) family protein (VIM5), partial mRNA. ACCESSION NM_104575 VERSION NM_104575.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE COMMENT REVIEWED REFSEQ: This record has...
Synonym: F12K22.15; F12K22_15; ORTH3; ORTHRUS 3; VARIANT IN METHYLATION 5
NM_104575.3 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana Zinc finger (C3HC4-type RING finger) family protein (VIM1), mRNA. (2433 bp)
LOCUS NM_001333806 2433 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana Zinc finger (C3HC4-type RING finger) family protein (VIM1), mRNA. ACCESSION NM_001333806 VERSION NM_001333806.1 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE COMMENT REVIEWED REFSEQ: This record has...
Synonym: F12K22.14; F12K22_14; ORTH2; ORTHRUS 2; VARIANT IN METHYLATION 1
NM_001333806.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana Zinc finger (C3HC4-type RING finger) family protein (VIM1), mRNA. (2136 bp)
LOCUS NM_202316 2136 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana Zinc finger (C3HC4-type RING finger) family protein (VIM1), mRNA. ACCESSION NM_202316 VERSION NM_202316.2 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE COMMENT REVIEWED REFSEQ: This record has been...
Synonym: F12K22.14; F12K22_14; ORTH2; ORTHRUS 2; VARIANT IN METHYLATION 1
NM_202316.2 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana ORTHRUS-like protein (ORTHL), mRNA. (1864 bp)
Qualifiers source 1..1864 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" gene 1..1864 /gene="ORTHL" /locus_tag="AT4G08590" /gene_synonym="15935; ORL1; ORTH-LIKE 1; ORTHRUS-like; ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6" /db_xref="Araport:AT4G08590" /db_xref="GeneID:826420" /db_xref="TAIR:AT4G08590" CDS 97..1212 /gene="ORTHL" /locus_tag="AT4G08590" /gene_synonym="15935; ORL1; ORTH-LIKE 1; ORTHRUS-like; ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6" /codon_start=1 /product="ORTHRUS-like protein" /protein_id="...
Synonym: 15935; ORL1; ORTH-LIKE 1; ORTHRUS-like; ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6
NM_001340598.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana ORTHRUS-like protein (ORTHL), mRNA. (1845 bp)
Qualifiers source 1..1845 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" gene 1..1845 /gene="ORTHL" /locus_tag="AT4G08590" /gene_synonym="15935; ORL1; ORTH-LIKE 1; ORTHRUS-like; ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6" /db_xref="Araport:AT4G08590" /db_xref="GeneID:826420" /db_xref="TAIR:AT4G08590" CDS 76..1191 /gene="ORTHL" /locus_tag="AT4G08590" /gene_synonym="15935; ORL1; ORTH-LIKE 1; ORTHRUS-like; ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6" /codon_start=1 /product="ORTHRUS-like protein" /protein_id="...
Synonym: 15935; ORL1; ORTH-LIKE 1; ORTHRUS-like; ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6
NM_001340599.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana ORTHRUS-like protein (ORTHL), mRNA. (1866 bp)
Qualifiers source 1..1866 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" gene 1..1866 /gene="ORTHL" /locus_tag="AT4G08590" /gene_synonym="15935; ORL1; ORTH-LIKE 1; ORTHRUS-like; ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6" /db_xref="Araport:AT4G08590" /db_xref="GeneID:826420" /db_xref="TAIR:AT4G08590" CDS 113..1303 /gene="ORTHL" /locus_tag="AT4G08590" /gene_synonym="15935; ORL1; ORTH-LIKE 1; ORTHRUS-like; ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6" /codon_start=1 /product="ORTHRUS-like protein" /protein_id...
Synonym: 15935; ORL1; ORTH-LIKE 1; ORTHRUS-like; ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6
NM_001340597.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana ORTHRUS-like protein (ORTHL), mRNA. (1766 bp)
Qualifiers source 1..1766 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" gene 1..1766 /gene="ORTHL" /locus_tag="AT4G08590" /gene_synonym="15935; ORL1; ORTH-LIKE 1; ORTHRUS-like; ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6" /db_xref="Araport:AT4G08590" /db_xref="GeneID:826420" /db_xref="TAIR:AT4G08590" CDS 76..1353 /gene="ORTHL" /locus_tag="AT4G08590" /gene_synonym="15935; ORL1; ORTH-LIKE 1; ORTHRUS-like; ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6" /codon_start=1 /product="ORTHRUS-like protein" /protein_id="...
Synonym: 15935; ORL1; ORTH-LIKE 1; ORTHRUS-like; ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6
NM_001340600.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana Zinc finger (C3HC4-type RING finger) family protein (VIM3), mRNA. (2259 bp)
LOCUS NM_123317 2259 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana Zinc finger (C3HC4-type RING finger) family protein (VIM3), mRNA. ACCESSION NM_123317 VERSION NM_123317.4 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE COMMENT REVIEWED REFSEQ: This record has been...
Synonym: MIJ24.3; MIJ24_3; ORTH1; ORTHRUS 1; VARIANT IN METHYLATION 3
NM_123317.4 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana ORTHRUS-like protein (ORTHL), mRNA. (1615 bp)
Qualifiers source 1..1615 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" gene 1..1615 /gene="ORTHL" /locus_tag="AT4G08590" /gene_synonym="15935; ORL1; ORTH-LIKE 1; ORTHRUS-like; ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6" /db_xref="Araport:AT4G08590" /db_xref="GeneID:826420" /db_xref="TAIR:AT4G08590" CDS 36..1430 /gene="ORTHL" /locus_tag="AT4G08590" /gene_synonym="15935; ORL1; ORTH-LIKE 1; ORTHRUS-like; ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6" /inference="Similar to RNA sequence, EST:INSD:ES175588.1,...
Synonym: 15935; ORL1; ORTH-LIKE 1; ORTHRUS-like; ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6
NM_001084888.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana ORTHRUS-like protein (ORTHL), mRNA. (1801 bp)
Qualifiers source 1..1801 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" gene 1..1801 /gene="ORTHL" /locus_tag="AT4G08590" /gene_synonym="15935; ORL1; ORTH-LIKE 1; ORTHRUS-like; ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6" /db_xref="Araport:AT4G08590" /db_xref="GeneID:826420" /db_xref="TAIR:AT4G08590" CDS 113..1510 /gene="ORTHL" /locus_tag="AT4G08590" /gene_synonym="15935; ORL1; ORTH-LIKE 1; ORTHRUS-like; ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6" /inference="Similar to RNA sequence, EST:INSD:AU226745.1,...
Synonym: 15935; ORL1; ORTH-LIKE 1; ORTHRUS-like; ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6
NM_116928.4 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/at/symbol%3aVIM
lang : en | div : | spe : at | query_string : symbol:VIM | format : html | download : 

0.000 | 0.000 | search_start;
0.150 | 0.150 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(full_search:symbol,synonym:VIM)?source=Arabidopsis thaliana (thale cress)?to=0&format=json
0.247 | 0.098 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(full_search:symbol,synonym:VIM)?source=Arabidopsis thaliana (thale cress)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.249 | 0.002 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]