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2024-06-02 18:55:45, GGRNA : RefSeq release 223 (Mar, 2024)

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Rattus norvegicus transmembrane protein 40 (Tmem40), transcript variant 1, mRNA. (1123 bp)
gene_synonym="RGD1306976" /note="isoform 1 is encoded by transcript variant 1" /codon_start=1 /product="transmembrane protein 40 isoform 1" /protein_id="NP_001399832.1" /db_xref="GeneID:680858" /db_xref="RGD:1587025" /translation="MEASGSSSQSPNSSAVHRETEDLNHSSDEDKHSRGPRKHRRKSHRDSSPGADHGELEVLKDELQLYGGAAGEMVLAGESGLRRRGSGSAEGEVEASQLNRLNIKKDDEFFHFVLLCFAIGALLVCYHYYSDWFMSLGVGLLTFASLETIGIYFGLVYRIHSVLQGFIPLLQKFRLPGFRRTN" misc_feature 228..587 /gene="Tmem40" /gene_synonym="RGD1306976" /note="Transmembrane protein 40 family; Region: TMEM40; pfam15817" /db_xref="CDD:374141" exon 118..192 /gene="Tmem40" /...
AA_position 60
Synonym: RGD1306976
NM_001412903.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus transmembrane protein 40 (Tmem40), transcript variant 3, mRNA. (1183 bp)
Tmem40" /gene_synonym="RGD1306976" /note="isoform 3 is encoded by transcript variant 3" /codon_start=1 /product="transmembrane protein 40 isoform 3" /protein_id="NP_001178502.1" /db_xref="GeneID:680858" /db_xref="RGD:1587025" /translation="MEASGSSSQSPNSSAVHRETEDLNHPETEFHKQHGKARERYERDKGADHGELEVLKDELQLYGGAAGEMVLAGESGLRRRGSGSAEGEVEASQLNRLNIKKDDEFFHFVLLCFAIGALLVCYHYYSDWFMSLGVGLLTFASLETIGIYFGLVYRIHSVLQGFIPLLQKFRLPGFRRTN" misc_feature 288..647 /gene="Tmem40" /gene_synonym="RGD1306976" /note="Transmembrane protein 40 family; Region: TMEM40; pfam15817" /db_xref="CDD:374141" exon 118..252 /gene="...
AA_position 80
Synonym: RGD1306976
NM_001191573.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus glycosylation dependent cell adhesion molecule 1 (Glycam1), mRNA. (584 bp)
gene="Glycam1" /note="SGP50; glyCAM-1; sulfated 50 kDa glycoprotein; endothelial ligand FOR L-selectin" /codon_start=1 /product="glycosylation-dependent cell adhesion molecule 1 precursor" /protein_id="NP_036926.2" /db_xref="GeneID:25258" /db_xref="RGD:2712" /translation="MKFFTVLLFASLAATSLAAVPGSKDELHLRTQPTDAIPASQFTPSSHISKESTSSKDLSKESSIFNEELVSEDNVGTESTKPQSQEAQDGLRSGSSQQEETTSAATSEGKLTMLSQAVQKELGKVIEGFISGVEDIISGASGTVRP" sig_peptide 22..78 /gene="Glycam1" /note="/evidence=ECO:0000255; propagated from UniProtKB/Swiss-Prot (Q04807.1)" mat_peptide 79..459 /gene="Glycam1" /product="Glycosylation-...
AA_position 24
NM_012794.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus ring finger protein 122 (Rnf122), transcript variant 1, mRNA. (1744 bp)
is encoded by transcript variant 1" /codon_start=1 /product="RING finger protein 122 isoform 1" /protein_id="NP_001386200.1" /db_xref="GeneID:502091" /db_xref="RGD:1561238" /translation="MHPFQWCNGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFISKLRNQAQSERYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIAGPTETSQSIGILLDELV" misc_feature 603..743 /gene="Rnf122" /gene_synonym="RGD1561238" /note="RING finger, H2 subclass, found in RING finger protein 122 (RNF122) and similar proteins; Region: RING-H2_RNF122; cd16676" /db_xref="CDD:438338" misc_feature order...
AA_position 103
Synonym: RGD1561238
NM_001399271.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus microfibril associated protein 5 (Mfap5), mRNA. (881 bp)
codon_start=1 /product="microfibrillar-associated protein 5 precursor" /protein_id="NP_001102114.1" /db_xref="GeneID:362429" /db_xref="RGD:1307919" /translation="MLVFGQKALLLVVALSIPSDWLPLGVSGQRGDDVPETFTDDPNLVNDPSTDDTVLADITPSTDDLASAGDKNTTAECRDEKFACTRLYSVHRPVRQCVHQACFTSLRRMYIINNEICSRLVCKEHEAMKDELCRQMAGLPPRRLRRSNYFRLPPCENMNLQRPDGP" sig_peptide 148..195 /gene="Mfap5" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 151..555 /gene="Mfap5" /note="Microfibril-associated glycoprotein (MAGP); Region: MAGP; pfam05507" /db_xref="CDD:428500" exon 206..241 /gene="Mfap5" /inference="...
AA_position 129
NM_001108644.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus stem-loop binding protein like (Slbpl), mRNA. (941 bp)
uncharacterized protein LOC100363294" /protein_id="NP_001257345.2" /db_xref="GeneID:100363294" /db_xref="RGD:2323347" /translation="MSLSSRMEMVSVGVTTEPCHARWEVETDEVVLRRRQKQIDYGKCTPGYQSFLQQVPRAQRQPGFHPQTPNKNRRYSRRSWDAQIRQWRRALHTWDPPSQPLHDRQAEGKAAGNFLRPVDTAPLDDLLDNWPQDPESSENWDRGEKEAQFAYLKVPASCPPQLKDELLHH" misc_feature 344..553 /gene="Slbpl" /gene_synonym="SLBP2" /note="Histone RNA hairpin-binding protein RNA-binding domain; Region: SLBP_RNA_bind; pfam15247" /db_xref="CDD:434569" exon 331..435 /gene="Slbpl" /gene_synonym="SLBP2" /inference="alignment:Splign:2.1.0" exon 436..588 /gene="Slbpl" /gene_...
AA_position 163
Synonym: SLBP2
NM_001270416.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus ribosomal protein S5 (Rps5), transcript variant 2, mRNA. (666 bp)
small ribosomal subunit protein uS7 isoform 2" /protein_id="NP_001264173.1" /db_xref="GeneID:25538" /db_xref="RGD:3601" /translation="MTEWETATPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQGSSNSYAIKKKDELERVAKSNR" misc_feature 150..611 /gene="Rps5" /note="Eukaryota homolog of Ribosomal Protein S7; Region: uS7_Eukaryote; cd14867" /db_xref="CDD:271246" misc_feature order(150..152,237..245,249..260,357..359,369..371) /gene="Rps5" /note="S9 interface [polypeptide binding]; other site" /db_xref="CDD...
AA_position 160
NM_001277244.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), mRNA. (2604 bp)
hand calcium-binding domain-containing protein 2-like" /codon_start=1 /product="dynein regulatory complex protein 8" /protein_id="NP_001099447.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGEPFSQEEMEEMLSAAIDPESNTINYRDYITMMVIDEN" misc_feature <355..639 /gene="Efcab2" /gene_synonym="RGD1308593" /note="Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]; Region: FRQ1; COG5126" /db_xref="CDD:227455" exon 257..336 /gene="Efcab2" /gene_synonym="RGD1308593" /...
AA_position 90
Synonym: RGD1308593
NM_001105977.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus ring finger protein 122 (Rnf122), transcript variant 2, mRNA. (1514 bp)
variant 2" /codon_start=1 /product="RING finger protein 122 isoform 2" /protein_id="NP_001386201.1" /db_xref="GeneID:502091" /db_xref="RGD:1561238" /translation="MVNVERILALFQHQIFLWQDEGRRLLAVEGGPVGPEGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFISKLRNQAQSERYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIAGPTETSQSIGILLDELV" misc_feature 373..513 /gene="Rnf122" /gene_synonym="RGD1561238" /note="RING finger, H2 subclass, found in RING finger protein 122 (RNF122) and similar proteins; Region: RING-H2_RNF122; cd16676" /db_xref="CDD:438338" misc_feature order...
AA_position 131
Synonym: RGD1561238
NM_001399272.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus similar to human chromosome 5 open reading frame 24 (C17h5orf24), mRNA. (4397 bp)
Splign:2.1.0" CDS 230..799 /gene="C17h5orf24" /gene_synonym="RGD1566359" /codon_start=1 /product="UPF0461 protein C5orf24 homolog" /protein_id="NP_001387699.1" /db_xref="GeneID:498701" /db_xref="RGD:1566359" /translation="MMHPVAGGNPAFCGPGKPPCLSDDAAMRAADQFDLYSSQQSKYSHTVSHKPMLCQRQDPLNEAHLQPTSGRNTEIKDELKKKKNLNRSGKRGRPSGTTKSAGYRTSTGRPLGTTKAAGFKTSPGRPLGTTKAAGYKVSPGRPPGSIKALSRLADLGYGCGTAAFPYPMMHSRVVHGVQETSGEVKPPSE" misc_feature 230..796 /gene="C17h5orf24" /gene_synonym="RGD1566359" /note="Family of unknown function (DUF5568); Region: DUF5568; pfam17724" /db_xref="CDD:435992" ORIGIN // REFERENCE 1...
AA_position 76
Synonym: RGD1566359
NM_001400770.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus trafficking protein particle complex subunit 6B (Trappc6b), mRNA. (1165 bp)
gene_synonym="RGD1309325" /note="trafficking protein particle complex 6B" /codon_start=1 /product="trafficking protein particle complex subunit 6B" /protein_id="NP_001100203.1" /db_xref="GeneID:299075" /db_xref="RGD:1309325" /translation="MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQKL" misc_feature 185..646 /gene="Trappc6b" /gene_synonym="RGD1309325" /note="Trs33 subunit of the TRAPP complex; Region: TRAPPC6A_Trs33; cd14944" /db_xref="CDD:271347" misc_feature order...
AA_position 59
Synonym: RGD1309325
NM_001106733.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus ribosomal protein S5 (Rps5), transcript variant 1, mRNA. (765 bp)
uS7 isoform 1" /protein_id="NP_001264172.1" /db_xref="GeneID:25538" /db_xref="RGD:3601" /translation="MTEWETATPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR" misc_feature 99..101 /gene="Rps5" /note="N-acetylmethionine. /evidence=ECO:0000250|UniProtKB:P46782; propagated from UniProtKB/Swiss-Prot (P24050.3); acetylation site" misc_feature 102..104 /gene="Rps5" /note="N-acetylthreonine, in 40S ribosomal protein S5, N-terminally processed. /evidence=...
AA_position 193
NM_001277243.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus TPD52 like 1 (Tpd52l1), mRNA. (1272 bp)
exon 1..122 /gene="Tpd52l1" /inference="alignment:Splign:2.1.0" CDS 104..595 /gene="Tpd52l1" /note="tumor protein D52-like 1" /codon_start=1 /product="tumor protein D53" /protein_id="NP_001037760.1" /db_xref="GeneID:689256" /db_xref="RGD:1594796" /translation="MEAQAQGLLETEPLQGRDGDAIGSADLSSMLSEEEKDELKAELVQLEEEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSRSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTAISRKFGDMRYSIRHSISMPAMRNSPTFKSFEERVETTVTSLKV" misc_feature 194..556 /gene="Tpd52l1" /note="tumor protein D52 family; Region: TPD52; pfam04201" /db_xref="CDD:427780" exon 123..238 /gene="Tpd52l1" /inference="alignment:...
AA_position 36
NM_001044295.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus chromatin modifying protein 4B-like 1 (Chmp4bl1), mRNA. (1050 bp)
chromatin modifying protein 4B-like 1" /protein_id="NP_001263385.1" /db_xref="GeneID:679886" /db_xref="RGD:1583604" /translation="MSVFGKLFGAGWGKAGKGDPTPQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEQTSTAISKPVGFGEEFDKDELMAELEELEQEELDKNLLEISGPETVPLPNVPSVALPSKPAKKKEEEDDDMKELENWAGSM" misc_feature 170..694 /gene="Chmp4bl1" /note="Region: Snf7; pfam03357" /db_xref="CDD:397437" ORIGIN // REFERENCE 1 (bases 1 to 1050) AUTHORS Chassefeyre R, Martinez-Hernandez J, Bertaso F, Bouquier N, Blot B, Laporte M, Fraboulet S, Coute Y,...
AA_position 161
NM_001276456.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus transmembrane protein 40 (Tmem40), transcript variant 2, mRNA. (1258 bp)
RGD1306976" /note="isoform 2 is encoded by transcript variant 2" /codon_start=1 /product="transmembrane protein 40 isoform 2" /protein_id="NP_001399833.1" /db_xref="GeneID:680858" /db_xref="RGD:1587025" /translation="MEASGSSSQSPNSSAVHRETEDLNHPETEFHKQHGKARERYERDKDSSDEDKHSRGPRKHRRKSHRDSSPGADHGELEVLKDELQLYGGAAGEMVLAGESGLRRRGSGSAEGEVEASQLNRLNIKKDDEFFHFVLLCFAIGALLVCYHYYSDWFMSLGVGLLTFASLETIGIYFGLVYRIHSVLQGFIPLLQKFRLPGFRRTN" misc_feature 363..722 /gene="Tmem40" /gene_synonym="RGD1306976" /note="Transmembrane protein 40 family; Region: TMEM40; pfam15817" /db_xref="CDD:374141" exon 118..252 /gene="...
AA_position 105
Synonym: RGD1306976
NM_001412904.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus solute carrier family 25 member 2 (Slc25a2), mRNA; nuclear gene for mitochondrial product. (3382 bp)
mitochondrial ornithine transporter 2" /protein_id="NP_001099622.1" /db_xref="GeneID:291640" /db_xref="RGD:1310667" /translation="MQTFPYMYKGLADCFLKTYNQVGVHGLYRGTSPALLAYVAQGSVLFLCYGFCQQFVRKVARVEQSAELNDFETATAGSLASAFAALVLCPTELVKCRLQTMHEMRVAGKTKHSHNTIWSMVKSIFMKDGPLGFYRGLSTTLAQEIPGYFFYFGGYEISRSFFASGGSKDELGPVPLMLSGSFAGVCLWLIIFPVDCIKSRIQVLSMFGKPAGLIKTFINVVRNEGILALYSGLKATLIRAIPSNAALFVVYEYSRKMMMNVVEEY" misc_feature <243..416 /gene="Slc25a2" /note="Mitochondrial carrier protein; Region: Mito_carr; pfam00153" /db_xref="CDD:395101" misc_feature 441..728 /gene="Slc25a2" /note="Mitochondrial carrier protein...
AA_position 168
NM_001106152.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus B-cell receptor-associated protein 31 (Bcap31), mRNA. (1231 bp)
protein 31" /protein_id="NP_001004224.1" /db_xref="GeneID:293852" /db_xref="RGD:1302944" /translation="MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFVVLIVILVLLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLVTLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGTAEDGGKLDVGSPEMKLEENKILKTDLKKLKDELASTKKKLEKAENEALAMQKQSEGLTKEYDRLLEEHAKLQASVRGPSDKKEE" misc_feature 89..496 /gene="Bcap31" /gene_synonym="Bap31" /note="B-cell receptor-associated protein 31-like; Region: Bap31; pfam05529" /db_xref="CDD:428511" misc_feature 662..823 /gene="Bcap31" /gene_synonym="Bap31" /note="Bap31/Bap29 cytoplasmic...
AA_position 191
Synonym: Bap31
NM_001004224.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus ring finger protein 41 (Rnf41), transcript variant 4, mRNA. (2015 bp)
protein ligase NRDP1" /codon_start=1 /product="E3 ubiquitin-protein ligase NRDP1 isoform 2" /protein_id="NP_001012195.1" /db_xref="GeneID:362814" /db_xref="RGD:1309557" /translation="MGYDVTRFQGDVDEDLICPICSGVLEEPVQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDSLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLEETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVEEI" misc_feature 168..236 /gene="Rnf41" /note="RING finger (Really Interesting New Gene) domain and U-box domain...
AA_position 106
NM_001012195.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus C-type lectin domain family 12, member A (Clec12a), mRNA. (1441 bp)
domain family 12 member A" /protein_id="NP_001128188.1" /db_xref="GeneID:680338" /db_xref="RGD:1592991" /translation="MSEEIVYADLKFQDSDKKEESQKSDKCGRKVPSAGSYSQHKTVLILILLCLLLFIGVVALGCIFYTTLETEMIKSNQLQRVKEELQENVSLQLMHNLNNSKKIKTLSAMLQNIATQLCQELSKKEPGHKCKPCPKASDWYKDSCYSRFQKYATWQESVEFCSARNASLLKVKNKDELEFIKSKELYNYWLALPPSKMYRSYELLSEKMFLSEGFKRSTYDITKMSCGFIRGEYVYYTNCDEEKYTMCEETASKVQVESVLSDLPEGSIL" misc_feature 598..945 /gene="Clec12a" /note="C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs); Region: CLECT_NK_receptors_like; cd03593" /db_xref="CDD:153063" misc_...
AA_position 174
NM_001134716.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus hematopoietically expressed homeobox (Hhex), mRNA. (1602 bp)
HHEX" /protein_id="NP_077361.1" /db_xref="GeneID:79237" /db_xref="RGD:619932" /translation="MQFPHPGPAAAPAVGVPLYAPTPLLQPAHPTPFYIDDILGRGPAAPTPTPTLPSPNSSFTSLVSSYRTPVYEPTPVHPAFSHHPAAALAAAYGPGGFGGPLYPFPRTVNDYTHALLRHDPLGKPLLWNPFLQRPLHKRKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRLKQENPQSNKKDELDSLDTSCDQGQDLPSEQNKGASLDSSQCSPSPASPEDPESEISEDSDQEVDIEGDKGYFNAG" misc_feature order(426..440,444..446,495..497,513..515,552..554, 558..563,570..575,579..587,591..596) /gene="Hhex" /gene_synonym="Hex" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order...
AA_position 206
Synonym: Hex
NM_024385.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus ring finger protein 41 (Rnf41), transcript variant 1, mRNA. (2297 bp)
NRDP1" /codon_start=1 /product="E3 ubiquitin-protein ligase NRDP1 isoform 1" /protein_id="NP_001387996.1" /db_xref="GeneID:362814" /db_xref="RGD:1309557" /translation="MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDSLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLEETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVEEI" misc_feature 421..549 /gene="Rnf41" /note="Modified RING finger, HC subclass (C3HC3D-type), found in neuregulin...
AA_position 126
NM_001401067.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus ring finger protein 41 (Rnf41), transcript variant 3, mRNA. (2307 bp)
NRDP1" /codon_start=1 /product="E3 ubiquitin-protein ligase NRDP1 isoform 1" /protein_id="NP_001387998.1" /db_xref="GeneID:362814" /db_xref="RGD:1309557" /translation="MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDSLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLEETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVEEI" misc_feature 431..559 /gene="Rnf41" /note="Modified RING finger, HC subclass (C3HC3D-type), found in neuregulin...
AA_position 126
NM_001401069.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus ring finger protein 41 (Rnf41), transcript variant 2, mRNA. (2389 bp)
NRDP1" /codon_start=1 /product="E3 ubiquitin-protein ligase NRDP1 isoform 1" /protein_id="NP_001387997.1" /db_xref="GeneID:362814" /db_xref="RGD:1309557" /translation="MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDSLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLEETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVEEI" misc_feature 513..641 /gene="Rnf41" /note="Modified RING finger, HC subclass (C3HC3D-type), found in neuregulin...
AA_position 126
NM_001401068.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus Ly-49 stimulatory receptor 3 (Ly49s3), mRNA. (1420 bp)
stimulatory receptor 3" /protein_id="NP_714948.1" /db_xref="GeneID:266768" /db_xref="RGD:628683" /translation="MSKQDVPCSTVRFKKSSGLQYQVRPEETQRPREAGWRVPWQLTVIATGILLSLRLVAVAMLVTNIFQYSNENHELQKTHKRQHNSSTMEKDIKLKEEMLRNMSVESVHYNAFLDLINREQNRWYKKTKTVLASPQHTGGCDEMHWFCYGIKCYYFTMDIRIWRECKQTCQNYSLSFLKIDDKDELKFLQDHIIRDNYWIGSSYNNKKKEWAWIDNSPFDLDFVARTLLRKTGYCLYFSMSGLHDDDCGKRYLCICEKGMDKFPAPLCSVKETSHSAV" misc_feature 249..602 /gene="Ly49s3" /note="Ly49-like protein, N-terminal region; Region: Ly49; pfam08391" /db_xref="CDD:429969" misc_feature 561..908 /gene="Ly49s3" /note="C-type lectin-like domain (CTLD) of...
AA_position 182
NM_153726.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus Ly49 stimulatory receptor 5 (Ly49s5), mRNA. (1443 bp)
stimulatory receptor 5" /protein_id="NP_001012767.1" /db_xref="GeneID:503662" /db_xref="RGD:1359728" /translation="MSEQEVPCSTVRFKKSSGLRYQVRPKETQRPREAGCRVPWQLTVIAIGILLSLRLVAVAMLVTNIFQFSHEKHELQKTRNRHPNCSTMEKDINLKEETLRTMSVECTSSNALLDLFNREQNRWYKKTKTVLASPQHPARCVEMHWFCHGIKCYYFIMDIRTWHECKQTCQNYNLSFLKIDDKDELKFLQDHIIRDSYWVGLSYNNIKKEWSWIDSSPLNCDLLACKPLQKTGYCIYFSMTGLHYDDCGKRHLCICEKGMDKIPAPLCSVKERSQSAV" misc_feature 282..635 /gene="Ly49s5" /note="Ly49-like protein, N-terminal region; Region: Ly49; pfam08391" /db_xref="CDD:429969" misc_feature 594..941 /gene="Ly49s5" /note="C-type lectin-like domain (CTLD)...
AA_position 182
NM_001012749.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus Ly49 inhibitory receptor 4 (Ly49i4), mRNA. (1588 bp)
receptor 4" /protein_id="NP_001009495.1" /db_xref="GeneID:494204" /db_xref="RGD:1549758" /translation="MTEQEVTYTTVRFHKSSVFQNKVRSEDTRSAKENGHRESSVPWKLIVIALGILCSVLMVTVAALVTNIFQYSNEKHELQKTQNRQHNCSTMEKDINLKEETLRNMSVESVHYNALLDLINREQNRWYKKTKTVLASPQHTGGCDEMHWFCYGIKCYYFTMDIRIWHECKQTCQNYSLSFLKIDDKDELKFLQDHIIRDNYWIGSSYNNKKKEWSWIDNSPFNLDFVARNSLRKTGYCMYFSMAGLHDDDCGKRYLCICEKGMDKIPAPLCSVKETSHSAV" misc_feature 440..796 /gene="Ly49i4" /note="Ly49-like protein, N-terminal region; Region: Ly49; pfam08391" /db_xref="CDD:429969" misc_feature 755..1102 /gene="Ly49i4" /note="C-type lectin-like domain (CTLD) of the...
AA_position 185
NM_001009495.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus Ly49 inhibitory receptor 3 (Ly49i3), mRNA. (1353 bp)
receptor 3" /protein_id="NP_001009499.1" /db_xref="GeneID:494208" /db_xref="RGD:1359730" /translation="MTEQEVTYTTVRFHKSSVFHNKVRSKETLSAKENGHRESSVPWKLIVIALAILCSVLMVTVAALVTNIFQYSNEKHELQKTQNCHHNCSTIENDIKLKEEMLRNISVESVHYNAFLDLINREQKRWYKKTKTVLASPQHTGRCDEMHWFCYGIKCYYFTMDIRIWRECKQICQNYSLSFLKIDDKDELKFLQDHIIRDNYWIGSSYNNKKKEWSWIDNSPFNLDFVARTLLRKTGYCLYFSMSGLHDDDCGKRYLCICEKGMDKIPAPLCSVKETSHSAV" misc_feature 206..562 /gene="Ly49i3" /note="Ly49-like protein, N-terminal region; Region: Ly49; pfam08391" /db_xref="CDD:429969" misc_feature 521..868 /gene="Ly49i3" /note="C-type lectin-like domain (CTLD) of the...
AA_position 185
NM_001009499.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus Ly49 inhibitory receptor 2 (Ly49i2), mRNA. (1516 bp)
inhibitory receptor 2" /protein_id="NP_690061.2" /db_xref="GeneID:260324" /db_xref="RGD:628669" /translation="MTEQEVTYTTVRFHKSSVFQNEVRSEETQSAKEIGHRESSVPWKLIVIALGILCSVLLVTVAVLVTNCLQYNHETHELQETQNSQHNCSTMENDIKLKEEMLRNMSIESTRYNALLDLINREQKRWYNKTKTVLAAPQHTGGCVEMHWLCYGIKCYYFIIDKRTWRKCIQTCQNYSLSFLKIHDKDELKFLQDHIIRDSYWIGLSYNNNKKEWSWIDNTTLNCDLVAMISLHKTGNCKYFSMTGLHDDDCGKRHLCICEKGIEKYPAPLCSVNERSQSAL" misc_feature 320..676 /gene="Ly49i2" /note="Ly49-like protein, N-terminal region; Region: Ly49; pfam08391" /db_xref="CDD:429969" misc_feature 635..982 /gene="Ly49i2" /note="C-type lectin-like domain (CTLD) of...
AA_position 185
NM_152848.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus aldo-keto reductase family 1, member D1 (Akr1d1), mRNA. (3255 bp)
xref="GeneID:192242" /db_xref="RGD:620752" /translation="MNLSTANHHIPLNDGNSIPIIGLGTYSDPRPVPGKTFIAVKTAIDEGYRHIDGAYVYRNEHEVGEAIREKVAEGKVKREEIFYCGKLWSTDHDPEMVRPALERTLQTLKLDYIDLYIIEMPMAFKPGEEFYPKDENGRVIYHKSNLCATWEALEACKDAGLVKSLGVSNFNRRQLEVILNKPGLKYKPVTNQVECHPYFTQTKLLKFCQQHDIVIVAYSPLGTCRNPLWVNVSSPPLLKDELLTSLGKKYNKTQAQIVLRFDIQRGLVVIPKSTTPERIKENFQIFDFSLTKEEMKDIEALNKNVRFVEMLMWSDHPEYPFHDEY" misc_feature 103..1023 /gene="Akr1d1" /note="AKR1D family of aldo-keto reductase (AKR); Region: AKR_AKR1D1-3; cd19109" /db_xref="CDD:381335" misc_feature order...
AA_position 239
NM_138884.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus GTPase, IMAP family member 7 (Gimap7), mRNA. (1297 bp)
synonym="Ian3" /codon_start=1 /product="GTPase, IMAP family member 7" /protein_id="NP_001019499.1" /db_xref="GeneID:500113" /db_xref="RGD:1565750" /translation="MAELDDDSLRIVLVGKTGSGKSATANTILGQKIFTSRIAPHAVTQTCQKASRRWKERDLLVVDTPGLFDTKVNLETTSIEISRCVLQSCPGPHAIILVLQLNRFTIEEQETVTRIKAIFGKAVMKYLIILFTRKDELEDQNLNDFIEDSDTNLKSIIKECDSRYLAINNKAEGAEGEMQVQELMGFVESLVRSNGGLYFSDPIYKYAEQRLKKQVGILREIYTDVLEKEIRIVEEECGLGKLSTQEGEEKIQAIREKYNLKIGNLREAAEKNIFTWIVEEVKKVLLKIWHFFS" misc_feature 135..737 /gene="Gimap7" /gene_synonym="Ian3" /note="AvrRpt2-Induced Gene 1 (AIG1); Region: AIG1; cd01852" /db_xref="CDD:206651"...
AA_position 134
Synonym: Ian3
NM_001024328.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus LRAT domain containing 1 (Lratd1), mRNA. (3719 bp)
Lratd1" /gene_synonym="Fam84a; RGD1305779" /note="protein FAM84A; family with sequence similarity 84, member A" /codon_start=1 /product="protein LRATD1" /protein_id="NP_001120771.1" /db_xref="GeneID:313969" /db_xref="RGD:1305779" /translation="MPANQSVIVQGAVRDGISVPGPGLAASLMGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEDLDERGQPDKFGVKGPPGCSPCPESPSRHHHHLLHQLVLNETQFSAFRGQECIFSKVTGGPQGADLSVYAVTALPAICEPGDLLELLWLQPATEQPAPAPHWAVYVGGGQIIHLHQGEIRQDSLYQAGAANVGRVVNSWYRYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREFKAGGEVPAGTQPPQQQYYLKVHLEENKVHTARFHSLEDLIREKRRIDASGRLRVLQELEDFVDDKE" misc_feature 1030..1272 /gene="...
AA_position 54
Synonym: Fam84a; RGD1305779
NM_001127299.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus twinfilin actin-binding protein 2 (Twf2), mRNA. (1582 bp)
in-frame stop codon" CDS 153..1202 /gene="Twf2" /codon_start=1 /product="twinfilin-2" /protein_id="NP_001128710.1" /db_xref="GeneID:684352" /db_xref="RGD:1591460" /translation="MAHQTGIHATEELKEFFAKARAGSIRLIKVIIEDEQLVLGASQEPVGRWDQDYDRAVLPLLDAQEPCYLLFRLDSQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDELFGTVKDDLSLAGYQKHLSSCAAPAPLTSAERELQQIRINEVKTEISVESKHQTLQGLAFPLQPEAQRALQQLKQKTVNYIQLKLDLERETIELVHTEPTNVAQLPSRVPRDAARYHFFLYKHTHEGDSLESVVFIYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFQLEIAKKIEIGDGAELTAEFLYDEVHPKQHAFKQAFAKPKGPGGKRGHKRLIRGPGENGEDS" misc_feature 162..578 /gene="Twf2" /note="N-terminal ADF domain of...
AA_position 118
NM_001135238.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X34, mRNA. (1999 bp)
gene="Efcab2" /gene_synonym="RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X32" /protein_id="XP_063128233.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQSIQVFP" polyA_site 1999 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 90
Synonym: RGD1308593
XM_063272163.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus glia maturation factor, beta (Gmfb), transcript variant X2, mRNA. (1129 bp)
includes similarity to: 3 long SRA reads" /db_xref="GeneID:81661" /db_xref="RGD:70910" CDS 511..864 /gene="Gmfb" /codon_start=1 /product="glia maturation factor beta isoform X2" /protein_id="XP_063130762.1" /db_xref="GeneID:81661" /db_xref="RGD:70910" /translation="MKIDKDKRLVVLDEELEGVSPDELKDELPERQPRTFIVYSYKYQHDDGRVSYPLCFIFSSPLGCKPEQQMMYAGSKNKLVQTAELTKVLSRSDVLIDFPSQYSGRAKQPDAQVFSCS" polyA_site 1129 /gene="Gmfb" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 25
XM_063274692.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus trafficking protein particle complex subunit 6B (Trappc6b), transcript variant X2, mRNA. (1113 bp)
CDS 222..587 /gene="Trappc6b" /gene_synonym="RGD1309325" /codon_start=1 /product="trafficking protein particle complex subunit 6B isoform X2" /protein_id="XP_038967906.1" /db_xref="GeneID:299075" /db_xref="RGD:1309325" /translation="MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLSAGKQYLEHASKANSR" misc_feature 228..>572 /gene="Trappc6b" /gene_synonym="RGD1309325" /note="Trs33 subunit of the TRAPP complex; Region: TRAPPC6A_Trs33; cd14944" /db_xref="CDD:271347" misc_feature order(234..236,243..245,255..257,528..533,561..563) /gene="...
AA_position 59
Synonym: RGD1309325
XM_039111978.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus thioredoxin domain containing 5 (Txndc5), mRNA. (2631 bp)
AQGVRGYPTLKFFKPGQEAVKYQGPRDFETLENWMLQTLNEEPATPEPEAEPPRAPELKQGLYELSANNFELHVSQGNHFIKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQHYAVCSEHQVRGYPTLLWFRDGKKVDQYKGKRDLESLRDYVQSQLQGSEAAPETVEPSEAPVLAAEPPGDKGTVLALTEKSFEDTIAQGITFVKFYAPWCGHCKNLAPTWEELSKKEFPGLADVTIAEVDCTAERGVCSKYSVRGYPTLLLFRGGEKVGEHNGGRDLDSLHSFVLRQAKDEL" sig_peptide 71..169 /gene="Txndc5" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 209..520 /gene="Txndc5" /note="PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast...
AA_position 414
NM_001271330.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus protein prenyltransferase alpha subunit repeat containing 1 (Ptar1), mRNA. (1596 bp)
receptor subunit (Rho2)" /codon_start=1 /product="protein prenyltransferase alpha subunit repeat-containing protein 1" /protein_id="NP_001099230.2" /db_xref="GeneID:286972" /db_xref="RGD:708369" /translation="MAETNEEVAVLVQRVVKDITNAFRRNPHIDEIGLIPCPEARYNRSPIVLVENKLGVESWCVKFLLPYVHNKLLLYRTRKQWLHKDELIDVTCTLLLLNPDFTTAWNVRKELILSGTLSPVKDLHLGKLALTKFPKSPETWIHRRWVLQQLSQETSLPSSVAKGSLGVVPAERTQRIIQEEMEVCSEAAGRYPSNYNAWSHRIWVLQNVAKLDLKILLDELSSTKHWASVHVSDHSGFHYRQFLLKSLISQTTTDNAVPQHNSLKCEPKESAEEPSVSLPQLLEEEVEFCTDLIDSYPGHETLWCHRRHVFYLQHHLNGRLPPSLTPLSPADCSGAALNDLHQIPTSPQLSQAMEVDGLSDSSKQGYSQETKRLKRTPAPDSLGLEMEHKFI...
AA_position 84
NM_001105760.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus TPD52 like 1 (Tpd52l1), transcript variant X6, mRNA. (1205 bp)
to: 6 ESTs, 80 long SRA reads" /db_xref="GeneID:689256" /db_xref="RGD:1594796" CDS 204..599 /gene="Tpd52l1" /codon_start=1 /product="tumor protein D53 isoform X6" /protein_id="XP_063130668.1" /db_xref="GeneID:689256" /db_xref="RGD:1594796" /translation="MEAQAQGLLETEPLQGRDGDAIGSADLSSMLSEEEKDELKAELVQLEEEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSRSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTAISRKFGDMRRK" polyA_site 1205 /gene="Tpd52l1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 36
XM_063274598.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X31, mRNA. (1919 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X29" /protein_id="XP_063128230.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MTPLGPKNAGLSSWGVGRRPPRVEGLPPPRPPRAARRVCDGISQATGSAPRWRRKRTRRVQVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQSIQVFP" polyA_site 1919 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 114
Synonym: RGD1308593
XM_063272160.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X29, mRNA. (2077 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X27" /protein_id="XP_038946475.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQSIQVFP" misc_feature 1319..>1639 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" polyA_site 2077 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 116
Synonym: RGD1308593
XM_039090547.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus tRNA nucleotidyl transferase 1 (Trnt1), mRNA; nuclear gene for mitochondrial product. (2330 bp)
RIDVSTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDRETLEAIAENAKGLAGISGERIWVELKKILTGDHVNHLIHLIYDLDVASHIGLPANANLEEFNKVSKNVEGFSPKPMTVLASLFKVQDDVTKLDLRLKISKEEKNLGLFIVKNRKDLIKATDSSEPLKPYQDFVIDSREPDATARVCELLKYQGEHALLKEMQQWSVPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKKT" misc_feature 314..1447 /gene="Trnt1" /note="tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]; Region: PcnB; COG0617" /db_xref="CDD:223690" exon 345..538 /gene="Trnt1" /inference="alignment:Splign:2.1.0" exon 539..677 /gene="Trnt1" /inference...
AA_position 424
NM_001024261.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus nuclear factor I/C (Nfic), mRNA. (1565 bp)
db_xref="RGD:62016" CDS 1..1320 /gene="Nfic" /note="olfactory epithelium nuclear factor I-C" /codon_start=1 /product="nuclear factor 1 C-type" /protein_id="NP_113755.1" /db_xref="GeneID:29228" /db_xref="RGD:62016" /translation="MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKAEVKQKWASRLLAKLRKDIRPECREDFVLAVTGKKAPGCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAACAHPVLCVQPHHIGVAVKELDLYLAYFVRERDAEQSSSPRTGVGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTGPNFSLGELQGHLAYDLNPASAGMRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYTSPNSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVHSGIARSPHPSSA...
AA_position 58
NM_031567.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus nuclear factor I X (Nfix), mRNA. (1445 bp)
Nf1x" /note="NF1-X1 protein; nuclear factor 1 X; nuclear factor I/X (CCAAT-binding transcription factor)" /codon_start=1 /product="nuclear factor 1 X-type" /protein_id="NP_110493.1" /db_xref="GeneID:81524" /db_xref="RGD:69080" /translation="MYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRP...
AA_position 57
Synonym: Nf1x
NM_030866.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus methyltransferase 14, N6-adenosine-methyltransferase subunit (Mettl14), mRNA. (2649 bp)
subunit METTL14; methyltransferase like 14" /codon_start=1 /product="N6-adenosine-methyltransferase non-catalytic subunit" /protein_id="NP_001386178.1" /db_xref="GeneID:295428" /db_xref="RGD:1304822" /translation="MDSRLQEIRERQKLRRQLLAQQLGAESADSIGAVLNSKDEQREIAETRETCRASYDTSAPNSKRKCLDEGETDEDKVEEYKDELEMQQEEENLPYEEEIYKDSSTFLKGTQSLNPHNDYCQHFVDTGHRPQNFIRDVGLADRFEEYPKLRELIRLKDELIAKSNTPPMYLQADIEAFDIRELTPKFDVILLEPPLEEYYRETGIAANEKCWTWDDIMKLEIDEIAAPRSFIFLWCGSGEGLDLGRVCLRKWGYRRCEDICWIKTNKNNPGKTKTLDPKAVFQRTKEHCLMGIKGTVKRSTDGDFIHANVDIDLIITEEPEIGNIEKPVEIFHIIEHFCLGRRRLHLFGRDSTIRPGWLTVGPTLTNSNYNAETYASYFSAPNSYLT...
AA_position 81
Synonym: RGD1304822
NM_001399249.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus protein disulfide isomerase family A, member 6 (Pdia6), mRNA. (1744 bp)
LGGRSGGYSSGKQGRGDSSSKKDVVELTDDTFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDIAKKTCEEHQLCVVAVLPHILDTGATGRNSYLEVLLKLADKYKKKMWGWLWTEAGAQYELENALGIGGFGYPAMAAINARKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVGGGSFPNITPREPWDGKDGELPVEDDIDLSDVELDDLEKDEL" sig_peptide 19..90 /gene="Pdia6" /gene_synonym="CaBP1; P5; Txndc7" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 109..417 /gene="Pdia6" /gene_synonym="CaBP1; P5; Txndc7" /note="PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related...
AA_position 442
Synonym: CaBP1; P5; Txndc7
NM_001004442.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus glia maturation factor, beta (Gmfb), mRNA. (1424 bp)
CDS 84..512 /gene="Gmfb" /note="GMF-beta; DNA for thyroid hormone receptor binding site (276bp)" /codon_start=1 /product="glia maturation factor beta" /protein_id="NP_112294.1" /db_xref="GeneID:81661" /db_xref="RGD:70910" /translation="MSESLVVCDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDKRLVVLDEELEGVSPDELKDELPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPLGCKPEQQMMYAGSKNKLVQTAELTKVFEIRNTEDLTEEWLREKLGFFH" misc_feature 87..89 /gene="Gmfb" /note="N-acetylserine. /evidence=ECO:0000269|Ref.4; propagated from UniProtKB/Swiss-Prot (Q63228.2); acetylation site" misc_feature 108..473 /gene="Gmfb" /note="ADF-homology domain of...
AA_position 58
NM_031032.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus MPN domain containing (Mpnd), mRNA. (1566 bp)
gene="Mpnd" /inference="alignment:Splign:2.1.0" CDS 22..1485 /gene="Mpnd" /codon_start=1 /product="MPN domain-containing protein" /protein_id="NP_001078875.1" /db_xref="GeneID:681944" /db_xref="RGD:1589335" /translation="MAAPESLSSTATAEEAPEEDEDEAETEDPERGTGSGGRSGSLGGSGGSTAGPGLALGGALTRRAVTLRVLLKDELLEPGEGVLSIYYLGRKFIGDLKLDGRIVWQENGQVFNSPSAWATHCKKLVNPAKKSGCGWASVKYKGQKLDKYKAAWLRRHQLHMPVAAADESPTSEGEEEELLLEEEEEDVLAGVSSEYKGHRPPGKGSLEPEATPPGKRVDKVRVPVRYCMLGSRDSARNPHTLVEVTSFAAINKFQPFNVAVSSNVLFLLDFHCHLTRSEVVGYLGGRWDINNQMLTVLRAFPCRSRLGDPDTAATVEEEIHQVLFLRGLSLVGWYHSHPHSPAAPSLQDIDAQMEYQLRLQGSNNGFQPCLALLCSPYYS...
AA_position 72
NM_001085406.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X28, mRNA. (1964 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X26" /protein_id="XP_063128229.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MTPLGPKNAGLSSWGVGRRPPRVEGLPPPRPPRAARRVCDGISQATGSAPRWRRKRTRRVQVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGVLFPWRLPLELELHGQSIQVFP" polyA_site 1964 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 114
Synonym: RGD1308593
XM_063272159.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X27, mRNA. (1924 bp)
gene_synonym="RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X25" /protein_id="XP_063128228.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MGSPRRRAPHQDGGGKGPGEYREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGEPFSQEEMEEMLSAAIDPESNTINYRDYITMMVIDEN" polyA_site 1924 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 99
Synonym: RGD1308593
XM_063272158.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X26, mRNA. (2122 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X24" /protein_id="XP_038946473.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGVLFPWRLPLELELHGQSIQVFP" misc_feature 1319..>1636 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" polyA_site 2122 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 116
Synonym: RGD1308593
XM_039090545.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

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Redirect URI : http://ggrna.dbcls.jp/ja/rn/aa%3aKDEL
lang : ja | div : | spe : rn | query_string : aa:KDEL | format : html | download :

0.000 | 0.000 | search_start;
0.084 | 0.084 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(aa:KDEL)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.121 | 0.037 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=(aa:KDEL)?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.127 | 0.005 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]