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2026-10-05 17:48:00, GGRNA : RefSeq release 233 (Jan, 2026)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Rattus norvegicus methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit (Mettl14), mRNA. (2649 bp)
N6-adenosine-methyltransferase subunit" /codon_start=1 /product="N6-adenosine-methyltransferase non-catalytic subunit" /protein_id="NP_001386178.1" /db_xref="GeneID:295428" /db_xref="RGD:1304822" /translation="MDSRLQEIRERQKLRRQLLAQQLGAESADSIGAVLNSKDEQREIAETRETCRASYDTSAPNSKRKCLDEGETDEDKVEEYKDELEMQQEEENLPYEEEIYKDSSTFLKGTQSLNPHNDYCQHFVDTGHRPQNFIRDVGLADRFEEYPKLRELIRLKDELIAKSNTPPMYLQADIEAFDIRELTPKFDVILLEPPLEEYYRETGIAANEKCWTWDDIMKLEIDEIAAPRSFIFLWCGSGEGLDLGRVCLRKWGYRRCEDICWIKTNKNNPGKTKTLDPKAVFQRTKEHCLMGIKGTVKRSTDGDFIHANVDIDLIITEEPEIGNIEKPVEIFHIIEHFCLGRRRLHLFGRDSTIRPGWLTVGPTLTNSNYNAETYASYFSAPNSYLTGCTE...
AA_position 81
Synonym: RGD1304822
NM_001399249.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus C-type lectin domain family 12, member A (Clec12a), mRNA. (1441 bp)
domain family 12 member A" /protein_id="NP_001128188.1" /db_xref="GeneID:680338" /db_xref="RGD:1592991" /translation="MSEEIVYADLKFQDSDKKEESQKSDKCGRKVPSAGSYSQHKTVLILILLCLLLFIGVVALGCIFYTTLETEMIKSNQLQRVKEELQENVSLQLMHNLNNSKKIKTLSAMLQNIATQLCQELSKKEPGHKCKPCPKASDWYKDSCYSRFQKYATWQESVEFCSARNASLLKVKNKDELEFIKSKELYNYWLALPPSKMYRSYELLSEKMFLSEGFKRSTYDITKMSCGFIRGEYVYYTNCDEEKYTMCEETASKVQVESVLSDLPEGSIL" misc_feature 598..945 /gene="Clec12a" /note="C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs); Region: CLECT_NK_receptors_like; cd03593" /db_xref="CDD:153063" misc_...
AA_position 174
NM_001134716.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus Ly49 stimulatory receptor 5 (Ly49s5), mRNA. (1443 bp)
stimulatory receptor 5" /protein_id="NP_001012767.1" /db_xref="GeneID:503662" /db_xref="RGD:1359728" /translation="MSEQEVPCSTVRFKKSSGLRYQVRPKETQRPREAGCRVPWQLTVIAIGILLSLRLVAVAMLVTNIFQFSHEKHELQKTRNRHPNCSTMEKDINLKEETLRTMSVECTSSNALLDLFNREQNRWYKKTKTVLASPQHPARCVEMHWFCHGIKCYYFIMDIRTWHECKQTCQNYNLSFLKIDDKDELKFLQDHIIRDSYWVGLSYNNIKKEWSWIDSSPLNCDLLACKPLQKTGYCIYFSMTGLHYDDCGKRHLCICEKGMDKIPAPLCSVKERSQSAV" misc_feature 282..635 /gene="Ly49s5" /note="Ly49-like protein, N-terminal region; Region: Ly49; pfam08391" /db_xref="CDD:462461" misc_feature 594..941 /gene="Ly49s5" /note="C-type lectin-like domain (CTLD)...
AA_position 182
NM_001012749.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus Ly-49 stimulatory receptor 3 (Ly49s3), mRNA. (1420 bp)
stimulatory receptor 3" /protein_id="NP_714948.1" /db_xref="GeneID:266768" /db_xref="RGD:628683" /translation="MSKQDVPCSTVRFKKSSGLQYQVRPEETQRPREAGWRVPWQLTVIATGILLSLRLVAVAMLVTNIFQYSNENHELQKTHKRQHNSSTMEKDIKLKEEMLRNMSVESVHYNAFLDLINREQNRWYKKTKTVLASPQHTGGCDEMHWFCYGIKCYYFTMDIRIWRECKQTCQNYSLSFLKIDDKDELKFLQDHIIRDNYWIGSSYNNKKKEWAWIDNSPFDLDFVARTLLRKTGYCLYFSMSGLHDDDCGKRYLCICEKGMDKFPAPLCSVKETSHSAV" misc_feature 249..602 /gene="Ly49s3" /note="Ly49-like protein, N-terminal region; Region: Ly49; pfam08391" /db_xref="CDD:462461" misc_feature 561..908 /gene="Ly49s3" /note="C-type lectin-like domain (CTLD) of...
AA_position 182
NM_153726.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus calreticulin 4 (Calr4), transcript variant 5, mRNA. (1264 bp)
RGD:1591090" /translation="MLRLGKNRPGQMPEPKGPGPAGLSRAQVQTDGEDVSGGCRGPDICGFGNNRLQVILYHRGKYHENNKTLKCRDWQDSEFIPDPDAKKPDDWNEAMDGVWEGPLIPNVKYKGEWKPRIIDNPNYQGEWIHPEIDNPKYRPDPTICHYHNISVLGLDLWQVKSGSIFDNFLLTNDEEFAEEVGNMTWGLRKDVEQQWRELYEEMEKQKEAEEAKKKREKQRAKQEDIWGLDEEDEEENEEDAEEEAEERPKQEGSGERASVDQKEAHFEQKDEL" misc_feature 771 /gene="Calr4" /note="recombination and DNA strand exchange inhibitor protein; Reviewed; Region: PRK00409" /db_xref="CDD:234750" exon 224..318 /gene="Calr4" /inference="alignment:Splign:2.1.0" exon 319..432 /gene="Calr4" /inference="alignment:Splign:2.1.0" exon 433..576 /gene="...
AA_position 269
NM_001431276.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus twinfilin actin-binding protein 2 (Twf2), mRNA. (1582 bp)
in-frame stop codon" CDS 153..1202 /gene="Twf2" /codon_start=1 /product="twinfilin-2" /protein_id="NP_001128710.1" /db_xref="GeneID:684352" /db_xref="RGD:1591460" /translation="MAHQTGIHATEELKEFFAKARAGSIRLIKVIIEDEQLVLGASQEPVGRWDQDYDRAVLPLLDAQEPCYLLFRLDSQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDELFGTVKDDLSLAGYQKHLSSCAAPAPLTSAERELQQIRINEVKTEISVESKHQTLQGLAFPLQPEAQRALQQLKQKTVNYIQLKLDLERETIELVHTEPTNVAQLPSRVPRDAARYHFFLYKHTHEGDSLESVVFIYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFQLEIAKKIEIGDGAELTAEFLYDEVHPKQHAFKQAFAKPKGPGGKRGHKRLIRGPGENGEDS" misc_feature 162..578 /gene="Twf2" /note="N-terminal ADF domain of...
AA_position 118
NM_001135238.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus calreticulin 4 (Calr4), transcript variant 3, mRNA. (1474 bp)
GPDICGFGNNRLQVILYHRGKYHENNKTLKCRINKDTHLYTLILRPNATYEVKIDNEKVTGGELEADWDFLPPKKIKDPYARKPRKWDERLQIEDPEDKKPEDWQDSEFIPDPDAKKPDDWNEAMDGVWEGPLIPNVKYKGEWKPRIIDNPNYQGEWIHPEIDNPKYRPDPTICHYHNISVLGLDLWQVKSGSIFDNFLLTNDEEFAEEVGNMTWGLRKDVEQQWRELYEEMEKQKEAEEAKKKREKQRAKQEDIWGLDEEDEEENEEDAEEEAEERPKQEGSGERASVDQKEAHFEQKDEL" misc_feature 981 /gene="Calr4" /note="recombination and DNA strand exchange inhibitor protein; Reviewed; Region: PRK00409" /db_xref="CDD:234750" exon 224..318 /gene="Calr4" /inference="alignment:Splign:2.1.0" exon 319..528 /gene="Calr4" /inference="alignment:Splign:2.1.0" exon 529..642 /gene="...
AA_position 339
NM_001431274.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X34, mRNA. (1999 bp)
gene="Efcab2" /gene_synonym="RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X32" /protein_id="XP_063128233.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQSIQVFP" misc_feature 1268..>1567 /gene="Efcab2" /gene_synonym="RGD1308593" /note="centrin; Provisional; Region: PTZ00183" /db_xref="CDD:185503" polyA_site 1999 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 90
Synonym: RGD1308593
XM_063272163.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus calreticulin 4 (Calr4), transcript variant 4, mRNA. (1570 bp)
DKGLQTTEDAKFYALSARFKPFSNENETLVVQFSVKHEQGIDCGGGYVKLFPATLNQEDMHSESQYYIMFGPDICGFGNNRLQVILYHRGKYHENNKTLKCRDWQDSEFIPDPDAKKPDDWNEAMDGVWEGPLIPNVKYKGEWKPRIIDNPNYQGEWIHPEIDNPKYRPDPTICHYHNISVLGLDLWQVKSGSIFDNFLLTNDEEFAEEVGNMTWGLRKDVEQQWRELYEEMEKQKEAEEAKKKREKQRAKQEDIWGLDEEDEEENEEDAEEEAEERPKQEGSGERASVDQKEAHFEQKDEL" misc_feature 223..918 /gene="Calr4" /note="Calreticulin family; Region: Calreticulin; pfam00262" /db_xref="CDD:459737" misc_feature 1077 /gene="Calr4" /note="recombination and DNA strand exchange inhibitor protein; Reviewed; Region: PRK00409" /db_xref="CDD:234750" exon 224..325 /gene="Calr4" /...
AA_position 371
NM_001431275.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus nuclear factor I/C (Nfic), mRNA. (1565 bp)
db_xref="RGD:62016" CDS 1..1320 /gene="Nfic" /note="olfactory epithelium nuclear factor I-C" /codon_start=1 /product="nuclear factor 1 C-type" /protein_id="NP_113755.1" /db_xref="GeneID:29228" /db_xref="RGD:62016" /translation="MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKAEVKQKWASRLLAKLRKDIRPECREDFVLAVTGKKAPGCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAACAHPVLCVQPHHIGVAVKELDLYLAYFVRERDAEQSSSPRTGVGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTGPNFSLGELQGHLAYDLNPASAGMRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYTSPNSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVHSGIARSPHPSSA...
AA_position 58
NM_031567.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus glia maturation factor, beta (Gmfb), transcript variant X2, mRNA. (1129 bp)
includes similarity to: 3 long SRA reads" /db_xref="GeneID:81661" /db_xref="RGD:70910" CDS 511..864 /gene="Gmfb" /codon_start=1 /product="glia maturation factor beta isoform X2" /protein_id="XP_063130762.1" /db_xref="GeneID:81661" /db_xref="RGD:70910" /translation="MKIDKDKRLVVLDEELEGVSPDELKDELPERQPRTFIVYSYKYQHDDGRVSYPLCFIFSSPLGCKPEQQMMYAGSKNKLVQTAELTKVLSRSDVLIDFPSQYSGRAKQPDAQVFSCS" misc_feature <511..792 /gene="Gmfb" /note="ADF-homology domain of glia maturation factor beta and related proteins; Region: ADF_GMF-beta_like; cd11283" /db_xref="CDD:200439" polyA_site 1129 /gene="Gmfb" /experiment...
AA_position 25
XM_063274692.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus trafficking protein particle complex subunit 6B (Trappc6b), transcript variant X2, mRNA. (1113 bp)
CDS 222..587 /gene="Trappc6b" /gene_synonym="RGD1309325" /codon_start=1 /product="trafficking protein particle complex subunit 6B isoform X2" /protein_id="XP_038967906.1" /db_xref="GeneID:299075" /db_xref="RGD:1309325" /translation="MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLSAGKQYLEHASKANSR" misc_feature 228..>572 /gene="Trappc6b" /gene_synonym="RGD1309325" /note="Trs33 subunit of the TRAPP complex; Region: TRAPPC6A_Trs33; cd14944" /db_xref="CDD:271347" misc_feature order(234..236,243..245,255..257,528..533,561..563) /gene="...
AA_position 59
Synonym: RGD1309325
XM_039111978.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X31, mRNA. (1919 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X29" /protein_id="XP_063128230.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MTPLGPKNAGLSSWGVGRRPPRVEGLPPPRPPRAARRVCDGISQATGSAPRWRRKRTRRVQVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQSIQVFP" misc_feature 1383..>1487 /gene="Efcab2" /gene_synonym="RGD1308593" /note="EF-hand domain pair; Region: EF-hand_7; pfam13499" /db_xref="CDD:463900" polyA_site 1919 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 114
Synonym: RGD1308593
XM_063272160.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X29, mRNA. (2077 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X27" /protein_id="XP_038946475.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQSIQVFP" misc_feature 1319..>1639 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" polyA_site 2077 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 116
Synonym: RGD1308593
XM_039090547.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus MPN domain containing (Mpnd), mRNA. (1566 bp)
gene="Mpnd" /inference="alignment:Splign:2.1.0" CDS 22..1485 /gene="Mpnd" /codon_start=1 /product="MPN domain-containing protein" /protein_id="NP_001078875.1" /db_xref="GeneID:681944" /db_xref="RGD:1589335" /translation="MAAPESLSSTATAEEAPEEDEDEAETEDPERGTGSGGRSGSLGGSGGSTAGPGLALGGALTRRAVTLRVLLKDELLEPGEGVLSIYYLGRKFIGDLKLDGRIVWQENGQVFNSPSAWATHCKKLVNPAKKSGCGWASVKYKGQKLDKYKAAWLRRHQLHMPVAAADESPTSEGEEEELLLEEEEEDVLAGVSSEYKGHRPPGKGSLEPEATPPGKRVDKVRVPVRYCMLGSRDSARNPHTLVEVTSFAAINKFQPFNVAVSSNVLFLLDFHCHLTRSEVVGYLGGRWDINNQMLTVLRAFPCRSRLGDPDTAATVEEEIHQVLFLRGLSLVGWYHSHPHSPAAPSLQDIDAQMEYQLRLQGSNNGFQPCLALLCSPYYS...
AA_position 72
NM_001085406.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X28, mRNA. (1964 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X26" /protein_id="XP_063128229.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MTPLGPKNAGLSSWGVGRRPPRVEGLPPPRPPRAARRVCDGISQATGSAPRWRRKRTRRVQVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGVLFPWRLPLELELHGQSIQVFP" misc_feature 1481 /gene="Efcab2" /gene_synonym="RGD1308593" /note="Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]; Region: FRQ1; COG5126" /db_xref="CDD:444056" polyA_site 1964 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES:...
AA_position 114
Synonym: RGD1308593
XM_063272159.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X27, mRNA. (1924 bp)
gene_synonym="RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X25" /protein_id="XP_063128228.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MGSPRRRAPHQDGGGKGPGEYREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGEPFSQEEMEEMLSAAIDPESNTINYRDYITMMVIDEN" misc_feature 1255..1650 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" polyA_site 1924 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN...
AA_position 99
Synonym: RGD1308593
XM_063272158.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X26, mRNA. (2122 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X24" /protein_id="XP_038946473.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGVLFPWRLPLELELHGQSIQVFP" misc_feature 1319..>1636 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" polyA_site 2122 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 116
Synonym: RGD1308593
XM_039090545.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus protein prenyltransferase alpha subunit repeat containing 1 (Ptar1), mRNA. (1596 bp)
receptor subunit (Rho2)" /codon_start=1 /product="protein prenyltransferase alpha subunit repeat-containing protein 1" /protein_id="NP_001099230.2" /db_xref="GeneID:286972" /db_xref="RGD:708369" /translation="MAETNEEVAVLVQRVVKDITNAFRRNPHIDEIGLIPCPEARYNRSPIVLVENKLGVESWCVKFLLPYVHNKLLLYRTRKQWLHKDELIDVTCTLLLLNPDFTTAWNVRKELILSGTLSPVKDLHLGKLALTKFPKSPETWIHRRWVLQQLSQETSLPSSVAKGSLGVVPAERTQRIIQEEMEVCSEAAGRYPSNYNAWSHRIWVLQNVAKLDLKILLDELSSTKHWASVHVSDHSGFHYRQFLLKSLISQTTTDNAVPQHNSLKCEPKESAEEPSVSLPQLLEEEVEFCTDLIDSYPGHETLWCHRRHVFYLQHHLNGRLPPSLTPLSPADCSGAALNDLHQIPTSPQLSQAMEVDGLSDSSKQGYSQETKRLKRTPAPDSLGLEMEHKFI...
AA_position 84
NM_001105760.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus glia maturation factor, beta (Gmfb), transcript variant X1, mRNA. (849 bp)
long SRA reads" /db_xref="GeneID:81661" /db_xref="RGD:70910" CDS 132..584 /gene="Gmfb" /codon_start=1 /product="glia maturation factor beta isoform X1" /protein_id="XP_063130761.1" /db_xref="GeneID:81661" /db_xref="RGD:70910" /translation="MSESLVVCDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDKRLVVLDEELEGVSPDELKDELPERQPRTFIVYSYKYQHDDGRVSYPLCFIFSSPLGCKPEQQMMYAGSKNKLVQTAELTKVLSRSDVLIDFPSQYSGRAKQPDAQVFSCS" misc_feature 156..512 /gene="Gmfb" /note="ADF-homology domain of glia maturation factor beta and related proteins; Region: ADF_GMF-beta_like; cd11283" /db_xref="CDD:200439" polyA_site 849 /gene="Gmfb" /...
AA_position 58
XM_063274691.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus TPD52 like 1 (Tpd52l1), transcript variant X5, mRNA. (808 bp)
ESTs, 14 long SRA reads, 7 Proteins" /db_xref="GeneID:689256" /db_xref="RGD:1594796" CDS 206..658 /gene="Tpd52l1" /codon_start=1 /product="tumor protein D53 isoform X5" /protein_id="XP_063130664.1" /db_xref="GeneID:689256" /db_xref="RGD:1594796" /translation="MEAQAQGLLETEPLQGRDGDAIGSADLSSMLSEEEKDELKAELVQLEEEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSRSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTAISRKFGDMRNSPTFKSFEERVETTVTSLKV" misc_feature 296..619 /gene="Tpd52l1" /note="Tumour protein D52 family; Region: TPD52; pfam04201" /db_xref="CDD:461225" ORIGIN //...
AA_position 36
XM_063274594.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus syntrophin, alpha 1 (Snta1), mRNA. (2135 bp)
RGD:1307068" /translation="MASGRRAPRTGLLELRSGAGSGAGGERWQRVLLTLAEDALTVSPADGEPGPEPEPAQLNGAAEPGAASPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSVGWDSPPASPLQRQPSSPGPQPRNLNEAKHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDTLFLRAKDEASARSWAGAIQAQISTFIPWVKDELQALLTATGTAGSQDIKQIGWLTEQLPSGGTAPTLALLTEKELLLYCSLPQTREALSRPARTAPLIATRLVHSGPSKGSVPYDAELSFALRTGTRHGVDTHLFSVESPQELAAWTRQLVDGCHRAAEGVQEVSTACTWNGRPCNLSVHIDKGFTLWAAEPGATRAVLLRQPFEKLQMSSDDGMSLLFLDFGGAEGEIQLDLHSCPKTMVFIIHSFLSAKVTRLGLLA" misc_feature 348..596 /gene="Snta1" /note="PDZ domain of syntrophins,...
AA_position 270
NM_001100901.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus zinc finger and BTB domain containing 43 (Zbtb43), mRNA. (5108 bp)
NP_001012094.1" /db_xref="GeneID:311872" /db_xref="RGD:1310287" /translation="MPTNVYSSQIGHQGQSKVRFHQSPTCRTTLNKIGDEMEPGTNSFQVEFPDFSSTILQKLNQQRQQGQLCDVSIVVQGHIFQAHKAVLAASSPYFCDQVLLKNSRRIVLPDVMNPRVFENILLFSYTGRLVMPAPEIVSYLTAASFLQMWHVVDKCTEVLEGNPTVLCQKLNHGSDHQSPSSSNYNGLAESFELGSGGHTDFPKAQELRDGENEEESTKDELSSQVTEHEYLPSNSSTEHDRLSTEMASQDGEEGTNDSTEFHYTRPLYSKPSIMPHRRWIHVKPERLEQPWDGMDVHAAYDEHQVSESVNTMQTDHSAQPSGAEEEFQIVEKKVEVEFDEHAEGSNYDEQVDFYGSSMEEFSGEKLGGGLIGHKQETALAAGYSENIEMVMGIKEEASHLGFSATDKLYPCQCGKSFTHKSQRDRHMSMHLGLRPYGCSVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTKSYEAAKAGQNTTEAN" misc_feature...
AA_position 218
Synonym: Zfp297b
NM_001012094.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus ring finger protein 122 (Rnf122), transcript variant 1, mRNA. (1744 bp)
is encoded by transcript variant 1" /codon_start=1 /product="RING finger protein 122 isoform 1" /protein_id="NP_001386200.1" /db_xref="GeneID:502091" /db_xref="RGD:1561238" /translation="MHPFQWCNGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFISKLRNQAQSERYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIAGPTETSQSIGILLDELV" misc_feature 603..743 /gene="Rnf122" /gene_synonym="RGD1561238" /note="RING finger, H2 subclass, found in RING finger protein 122 (RNF122) and similar proteins; Region: RING-H2_RNF122; cd16676" /db_xref="CDD:438338" misc_feature order...
AA_position 103
Synonym: RGD1561238
NM_001399271.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X24, mRNA. (1761 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X22" /protein_id="XP_038946471.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGSNIWIVANELQTDQGVSNDDRWGLFEGNG" misc_feature 1319..>1636 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" ORIGIN //...
AA_position 116
Synonym: RGD1308593
XM_039090543.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X23, mRNA. (2019 bp)
gene="Efcab2" /gene_synonym="RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X21" /protein_id="XP_063128227.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQRALFLVSLSKCFPDCKWLGGQSLLPVGTLSLLQLERSSASSAQLPDAQPDLSHVT" misc_feature 1268..>1561 /gene="Efcab2" /gene_synonym="RGD1308593" /note="centrin; Provisional; Region: PTZ00183" /db_xref="CDD:185503" polyA_site 2019 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence...
AA_position 90
Synonym: RGD1308593
XM_063272157.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus trafficking protein particle complex subunit 6B (Trappc6b), mRNA. (1165 bp)
gene_synonym="RGD1309325" /note="trafficking protein particle complex 6B" /codon_start=1 /product="trafficking protein particle complex subunit 6B" /protein_id="NP_001100203.1" /db_xref="GeneID:299075" /db_xref="RGD:1309325" /translation="MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQKL" misc_feature 185..646 /gene="Trappc6b" /gene_synonym="RGD1309325" /note="Trs33 subunit of the TRAPP complex; Region: TRAPPC6A_Trs33; cd14944" /db_xref="CDD:271347" misc_feature order...
AA_position 59
Synonym: RGD1309325
NM_001106733.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus calreticulin 4 (Calr4), transcript variant 1, mRNA. (1764 bp)
GPDICGFGNNRLQVILYHRGKYHENNKTLKCRINKDTHLYTLILRPNATYEVKIDNEKVTGGELEADWDFLPPKKIKDPYARKPRKWDERLQIEDPEDKKPEDWQDSEFIPDPDAKKPDDWNEAMDGVWEGPLIPNVKYKGEWKPRIIDNPNYQGEWIHPEIDNPKYRPDPTICHYHNISVLGLDLWQVKSGSIFDNFLLTNDEEFAEEVGNMTWGLRKDVEQQWRELYEEMEKQKEAEEAKKKREKQRAKQEDIWGLDEEDEEENEEDAEEEAEERPKQEGSGERASVDQKEAHFEQKDEL" sig_peptide 102..164 /gene="Calr4" /inference="COORDINATES: ab initio prediction:SignalP:6.0" misc_feature 183..1112 /gene="Calr4" /note="Calreticulin family; Region: Calreticulin; pfam00262" /db_xref="CDD:459737" misc_feature 1271 /gene="Calr4" /note="recombination and DNA strand exchange...
AA_position 436
NM_001431272.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X22, mRNA. (1871 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X20" /protein_id="XP_063128226.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MTPLGPKNAGLSSWGVGRRPPRVEGLPPPRPPRAARRVCDGISQATGSAPRWRRKRTRRVQVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQRALFLASLFPKRKWKKCCLLQLILNQTPLITETT" polyA_site 1871 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 114
Synonym: RGD1308593
XM_063272156.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus nuclear factor I X (Nfix), mRNA. (1445 bp)
Nf1x" /note="NF1-X1 protein; nuclear factor 1 X; nuclear factor I/X (CCAAT-binding transcription factor)" /codon_start=1 /product="nuclear factor 1 X-type" /protein_id="NP_110493.1" /db_xref="GeneID:81524" /db_xref="RGD:69080" /translation="MYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRP...
AA_position 57
Synonym: Nf1x
NM_030866.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X20, mRNA. (1851 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X18" /protein_id="XP_063128224.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MTPLGPKNAGLSSWGVGRRPPRVEGLPPPRPPRAARRVCDGISQATGSAPRWRRKRTRRVQVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGEPFSQEEMEEMLSAAIDPESNTINYRDYITMMVIDEN" misc_feature <1305..1577 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" polyA_site 1851 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN...
AA_position 114
Synonym: RGD1308593
XM_063272154.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X19, mRNA. (1969 bp)
gene_synonym="RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X17" /protein_id="XP_038946466.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MGSPRRRAPHQDGGGKGPGEYREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGVLFPWRLPLELELHGEPFSQEEMEEMLSAAIDPESNTINYRDYITMMVIDEN" misc_feature 1255..1695 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" polyA_site 1969 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence...
AA_position 99
Synonym: RGD1308593
XM_039090538.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus calreticulin 4 (Calr4), transcript variant 2, mRNA. (1780 bp)
GPDICGFGNNRLQVILYHRGKYHENNKTLKCRINKDTHLYTLILRPNATYEVKIDNEKVTGGELEADWDFLPPKKIKDPYARKPRKWDERLQIEDPEDKKPEDWQDSEFIPDPDAKKPDDWNEAMDGVWEGPLIPNVKYKGEWKPRIIDNPNYQGEWIHPEIDNPKYRPDPTICHYHNISVLGLDLWQVKSGSIFDNFLLTNDEEFAEEVGNMTWGLRKDVEQQWRELYEEMEKQKEAEEAKKKREKQRAKQEDIWGLDEEDEEENEEDAEEEAEERPKQEGSGERASVDQKEAHFEQKDEL" misc_feature 223..1128 /gene="Calr4" /note="Calreticulin family; Region: Calreticulin; pfam00262" /db_xref="CDD:459737" misc_feature 1287 /gene="Calr4" /note="recombination and DNA strand exchange inhibitor protein; Reviewed; Region: PRK00409" /db_xref="CDD:234750" exon 224..325 /gene="Calr4" /...
AA_position 441
NM_001431273.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X16, mRNA. (2012 bp)
gene_synonym="RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X14" /protein_id="XP_063128223.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MGSPRRRAPHQDGGGKGPGEYREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQRALFLVSLSKCFPDCKWLGGQSLLPVGTLSLLQLERSSASSAQLPDAQPDLSHVT" misc_feature 1255..>1557 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" polyA_site 2012 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence...
AA_position 99
Synonym: RGD1308593
XM_063272153.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus TPD52 like 1 (Tpd52l1), transcript variant X4, mRNA. (864 bp)
ESTs, 20 long SRA reads, 5 Proteins" /db_xref="GeneID:689256" /db_xref="RGD:1594796" CDS 208..714 /gene="Tpd52l1" /codon_start=1 /product="tumor protein D53 isoform X4" /protein_id="XP_038947273.1" /db_xref="GeneID:689256" /db_xref="RGD:1594796" /translation="MEAQAQGLLETEPLQGRDGDAIGSADLSSMLSEEEKDELKAELVQLEEEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSRSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTAISRKFGDMRSHSIGYSIRHSISMPAMRNSPTFKSFEERVETTVTSLKV" misc_feature 298..675 /gene="Tpd52l1" /note="Tumour protein D52 family; Region: TPD52; pfam04201" /db_xref="CDD:461225" ORIGIN //...
AA_position 36
XM_039091345.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus stem-loop binding protein like (Slbpl), transcript variant X5, mRNA. (1163 bp)
protein LOC100363294 isoform X1" /protein_id="XP_063133117.1" /db_xref="GeneID:100363294" /db_xref="RGD:2323347" /translation="MSLSSRMEMVSVGVTTEPCHARWEVETDEVVLRRRQKQIDYGKCTPGYQSFLQQVPRAQRQPGFHPQTPNKNRRYSRRSWDAQIRQWRRALHTWDPPSQPLHDRQAEGKAAGNFLRPVDTAPLDDLLDNWPQDPESSENWDRGEKEAQFAYLKVPASCPPQLKDELLHH" misc_feature 568..777 /gene="Slbpl" /gene_synonym="SLBP2" /note="Histone RNA hairpin-binding protein RNA-binding domain; Region: SLBP_RNA_bind; pfam15247" /db_xref="CDD:464587" polyA_site 1163 /gene="Slbpl" /gene_synonym="SLBP2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 163
Synonym: SLBP2
XM_063277047.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus trafficking protein particle complex subunit 6B (Trappc6b), transcript variant X1, mRNA. (2012 bp)
CDS 223..738 /gene="Trappc6b" /gene_synonym="RGD1309325" /codon_start=1 /product="trafficking protein particle complex subunit 6B isoform X1" /protein_id="XP_063117748.1" /db_xref="GeneID:299075" /db_xref="RGD:1309325" /translation="MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFNVFVLYIHIYFTFSFKPRGN" misc_feature 229..681 /gene="Trappc6b" /gene_synonym="RGD1309325" /note="Trs33 subunit of the TRAPP complex; Region: TRAPPC6A_Trs33; cd14944" /db_xref="CDD:271347" misc_feature order...
AA_position 59
Synonym: RGD1309325
XM_063261678.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus retinoic acid induced 2 (Rai2), mRNA. (2564 bp)
translation="MDDLQSQNLSMDMTDSPPTLANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILNPPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPVQLPVVLEQHVFQHLNSPLVLPQEAPCSSNAIHNNLFQGAEDSEAQPQLLDLRIPSQPQEPTLPFEAVLQNLFPTQGSLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPLPVPVPIPIPVPVPQSSESKFSPSFPKPPSSFGLHSFKGTQTTLEKDELKPLDILQPKEYFQLSRHTVIKMGGENEALDLSMKSVPWLKAGEASPPVFQEDAALDLSLAAHRKAEVPPETLYNTSGSADIQGHTLLEKRPSGMEMPFAPAKSREASAMMDSHSSSSNGTEMVSQPIHPGSELKPENNIEIVSESQAAKVIVSVEDAVPAIFCGKIKGLSGVSTKNFSFKREDSVLQGYDINSQEDESLGNTEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK" ORIGIN // REFERENCE 1 (bases 1 to 2564) AUTHORS Gaudet P...
AA_position 285
Synonym: RGD1560139
NM_001109316.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus lipocalin Cav p 2.0101-like (LOC134484151), mRNA. (783 bp)
GeneID:134484151" CDS 57..578 /gene="LOC134484151" /codon_start=1 /product="lipocalin Cav p 2.0101-like" /protein_id="XP_063136601.1" /db_xref="GeneID:134484151" /translation="MEALWLALVFTWICSRSGSNGQLNVTQISGDWHTIAIAATEIDVITDDGLLKLFFRHLECSKQCKEIILTFYGEVDEECEKFEVKAQNRYLDWFTFTYSGDRYFKIKYVSSASMIIFGYYLKDELYSKYVFILLGKGNSVSEADQQKFTDAYNSIGMSKENVRYLLDKDICPK" misc_feature 132..569 /gene="LOC134484151" /note="lipocalin/cytosolic fatty acid-binding protein family; Region: lipocalin_FABP; cl10502" /db_xref="CDD:471979" misc_feature order...
AA_position 122
XM_063280531.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X15, mRNA. (1896 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X13" /protein_id="XP_038946463.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MTPLGPKNAGLSSWGVGRRPPRVEGLPPPRPPRAARRVCDGISQATGSAPRWRRKRTRRVQVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGVLFPWRLPLELELHGEPFSQEEMEEMLSAAIDPESNTINYRDYITMMVIDEN" misc_feature <1305..1622 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" polyA_site 1896 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence...
AA_position 114
Synonym: RGD1308593
XM_039090535.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X12, mRNA. (797 bp)
regulatory complex protein 8 isoform X9" /protein_id="XP_063128221.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAASESQKLLVPSFTDSSEVFCSCLQTHQKRTSDPITDGCELPCSCWELNSGPLEEQSVLLTTEPSLQPEISNFISQPAECCNYREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQSIQVFP" misc_feature 579 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" polyA_site 797 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 162
Synonym: RGD1308593
XM_063272151.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X11, mRNA. (2088 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X10" /protein_id="XP_063128220.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQRALFLVSLSKCFPDCKWLGGQSLLPVGTLSLLQLERSSASSAQLPDAQPDLSHVT" misc_feature 1319..>1633 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" polyA_site 2088 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence...
AA_position 113
Synonym: RGD1308593
XM_063272150.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X10, mRNA. (1017 bp)
regulatory complex protein 8 isoform X9" /protein_id="XP_063128219.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAASESQKLLVPSFTDSSEVFCSCLQTHQKRTSDPITDGCELPCSCWELNSGPLEEQSVLLTTEPSLQPEISNFISQPAECCNYREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQSIQVFP" misc_feature 579 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" polyA_site 1017 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 162
Synonym: RGD1308593
XM_063272149.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X9, mRNA. (1939 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X8" /protein_id="XP_063128218.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MTPLGPKNAGLSSWGVGRRPPRVEGLPPPRPPRAARRVCDGISQATGSAPRWRRKRTRRVQVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQRALFLVSLSKCFPDCKWLGGQSLLPVGTLSLLQLERSSASSAQLPDAQPDLSHVT" polyA_site 1939 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 114
Synonym: RGD1308593
XM_063272148.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus ring finger protein 122 (Rnf122), transcript variant 2, mRNA. (1514 bp)
variant 2" /codon_start=1 /product="RING finger protein 122 isoform 2" /protein_id="NP_001386201.1" /db_xref="GeneID:502091" /db_xref="RGD:1561238" /translation="MVNVERILALFQHQIFLWQDEGRRLLAVEGGPVGPEGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFISKLRNQAQSERYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIAGPTETSQSIGILLDELV" misc_feature 373..513 /gene="Rnf122" /gene_synonym="RGD1561238" /note="RING finger, H2 subclass, found in RING finger protein 122 (RNF122) and similar proteins; Region: RING-H2_RNF122; cd16676" /db_xref="CDD:438338" misc_feature order...
AA_position 131
Synonym: RGD1561238
NM_001399272.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), transcript variant X8, mRNA. (2097 bp)
RGD1308593" /codon_start=1 /product="dynein regulatory complex protein 8 isoform X7" /protein_id="XP_063128217.1" /db_xref="GeneID:289280" /db_xref="RGD:1308593" /translation="MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVREIGTIIRSLGCSPTEGELHDFIAEVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGQRALFLVSLSKCFPDCKWLGGQSLLPVGTLSLLQLERSSASSAQLPDAQPDLSHVT" misc_feature 1319..>1642 /gene="Efcab2" /gene_synonym="RGD1308593" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" polyA_site 2097 /gene="Efcab2" /gene_synonym="RGD1308593" /experiment="COORDINATES: polyA evidence...
AA_position 116
Synonym: RGD1308593
XM_063272147.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus PMS1 protein homolog 1 pseudogene (LOC108351648), mRNA. (4901 bp)
/product="LOW QUALITY PROTEIN: PMS1 protein homolog 1-like" /protein_id="XP_063122427.1" /db_xref="GeneID:108351648" /db_xref="RGD:11422529" /translation="MDGQQSVCILITPYGELKNYGFDKMEIQDNGEGIEAVDVPVTALKYTLKINSHEDLKNLTTCGFPGEALGSICNAAEVVVTASAAAGDFSTQYVLDGTGHILSQNPSHLGQGTTVTALKNLLVRKQFYSTAKKCKDELKEMDRIFSXATAETXHKDYFVHTKAVIWQKSRVPDHRMALMWFWDLL" misc_feature 46..>435 /gene="LOC108351648" /note="DNA mismatch repair protein MutL; Region: mutl; TIGR00585" /db_xref="CDD:273155" polyA_site 4901 /gene="LOC108351648" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 135
XM_063266357.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus 60S ribosomal protein L9 pseudogene (LOC103692829), mRNA. (720 bp)
start=1 /product="large ribosomal subunit protein uL6-like" /protein_id="XP_038936008.1" /db_xref="GeneID:103692829" /db_xref="RGD:9187595" /translation="MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQ" misc_feature 41..601 /gene="LOC103692829" /note="60S ribosomal protein L6; Provisional; Region: PTZ00027" /db_xref="CDD:240234" polyA_site 720 /gene="LOC103692829" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 141
XM_039080080.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus similar to human chromosome 5 open reading frame 24 (C17h5orf24), mRNA. (4397 bp)
Splign:2.1.0" CDS 230..799 /gene="C17h5orf24" /gene_synonym="RGD1566359" /codon_start=1 /product="UPF0461 protein C5orf24 homolog" /protein_id="NP_001387699.1" /db_xref="GeneID:498701" /db_xref="RGD:1566359" /translation="MMHPVAGGNPAFCGPGKPPCLSDDAAMRAADQFDLYSSQQSKYSHTVSHKPMLCQRQDPLNEAHLQPTSGRNTEIKDELKKKKNLNRSGKRGRPSGTTKSAGYRTSTGRPLGTTKAAGFKTSPGRPLGTTKAAGYKVSPGRPPGSIKALSRLADLGYGCGTAAFPYPMMHSRVVHGVQETSGEVKPPSE" misc_feature 230..796 /gene="C17h5orf24" /gene_synonym="RGD1566359" /note="Family of unknown function (DUF5568); Region: DUF5568; pfam17724" /db_xref="CDD:465471" ORIGIN // REFERENCE 1...
AA_position 76
Synonym: RGD1566359
NM_001400770.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus 60S ribosomal protein L9 pseudogene (LOC103692519), mRNA. (1686 bp)
start=1 /product="large ribosomal subunit protein uL6-like" /protein_id="XP_038967503.1" /db_xref="GeneID:103692519" /db_xref="RGD:9461644" /translation="MKTILSNQTVNIPENVDITLKGCTVIVKGPKGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFCYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVQMRTGVARSVSQAQKDELILEGNDIELVSNSAAVIQQATTVKNKDIRKFLDGIYVSEKGTMQQPDK" misc_feature 1011..1577 /gene="LOC103692519" /note="60S ribosomal protein L6; Provisional; Region: PTZ00027" /db_xref="CDD:240234" ORIGIN //...
AA_position 141
XM_039111575.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

Data Export:

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Redirect URI : https://172.18.8.233:20082/rn/aa%3aKDEL
lang : en | div : | spe : rn | query_string : aa:KDEL | format : html | download : 

0.000 | 0.000 | search_start;
0.071 | 0.071 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(aa:KDEL)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.120 | 0.049 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=(aa:KDEL)?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.125 | 0.005 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]