2024-11-01 16:23:52, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NM_001259385 7888 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster Argonaute-1 (AGO1), transcript variant D, mRNA. ACCESSION NM_001259385 VERSION NM_001259385.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 7888) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7888) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 7888) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 7888) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 7888) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 7888) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 7888) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 7888) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 7888) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 7888) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 7888) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 7888) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 7888) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 7888) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 7888) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 7888) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 7888) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 7888) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 7888) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 7888) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 7888) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 7888) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 7888) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 7888) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7888 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..7888 /gene="AGO1" /locus_tag="Dmel_CG6671" /gene_synonym="Ago; ago-1; Ago-1; AGO-1; ago1; Ago1; ago1-1; Agp1; anon-WO0257455.29; argonaute1; CG6671; dAgo1; dAGO1; Dm Ago1; dmAgo1; DmAgo1; Dmel\CG6671; l(2)04845; l(2)4845; l(2)k00208; l(2)k08121; MRE20" /note="Argonaute-1" /map="50C9-50C17" /db_xref="FLYBASE:FBgn0262739" /db_xref="GeneID:36544" CDS 349..3303 /gene="AGO1" /locus_tag="Dmel_CG6671" /gene_synonym="Ago; ago-1; Ago-1; AGO-1; ago1; Ago1; ago1-1; Agp1; anon-WO0257455.29; argonaute1; CG6671; dAgo1; dAGO1; Dm Ago1; dmAgo1; DmAgo1; Dmel\CG6671; l(2)04845; l(2)4845; l(2)k00208; l(2)k08121; MRE20" /note="CG6671 gene product from transcript CG6671-RD; CG6671-PD; AGO1-PD; argonaute-1; argonaute protein 1; Argonaute1; mRNA-like ncRNA in embryogenesis 20; argonaute 1" /codon_start=1 /product="Argonaute-1, isoform D" /protein_id="NP_001246314.1" /db_xref="FLYBASE:FBpp0294043" /db_xref="GeneID:36544" /db_xref="FLYBASE:FBgn0262739" /translation="
MSTERELAPGGPAQLHPHTLPLTFPDLQMTSTVGIIGKVYESQWTPSPTRPQSPSQAQTSFDTLTSPPAPGSSVNPTAVTSPSAQNVAAGGATVAGAAATAAQVASALGATTGSVTPAIATATPATQPDMPVFTCPRRPNLGREGRPIVLRANHFQVTMPRGYVHHYDINIQPDKCPRKVNREIIETMVHAYSKIFGVLKPVFDGRNNLYTRDPLPIGNERLELEVTLPGEGKDRIFRVTIKWQAQVSLFNLEEALEGRTRQIPYDAILALDVVMRHLPSMTYTPVGRSFFSSPEGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKAQPVIDFMCEVLDIRDINEQRKPLTDSQRVKFTKEIKGLKIEITHCGQMRRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYRMKLRYPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREINNLVKRADFNNDSYVQEFGLTISNSMMEVRGRVLPPPKLQYGGRVSTGLTGQQLFPPQNKVSLASPNQGVWDMRGKQFFTGVEIRIWAIACFAPQRTVREDALRNFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKITFPGLQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFLGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVRELLIMFYKSTGGYKPHRIILYRDGVSEGQFPHVLQHELTAIREACIKLEPEYRPGITFIVVQKRHHTRLFCAEKKEQSGKSGNIPAGTTVDVGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDSDELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSHQSGCSEDRTPGAMARAITVHADTKKVMYFA"
misc_feature 784..1173 /gene="AGO1" /locus_tag="Dmel_CG6671" /gene_synonym="Ago; ago-1; Ago-1; AGO-1; ago1; Ago1; ago1-1; Agp1; anon-WO0257455.29; argonaute1; CG6671; dAgo1; dAGO1; Dm Ago1; dmAgo1; DmAgo1; Dmel\CG6671; l(2)04845; l(2)4845; l(2)k00208; l(2)k08121; MRE20" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 1201..1353 /gene="AGO1" /locus_tag="Dmel_CG6671" /gene_synonym="Ago; ago-1; Ago-1; AGO-1; ago1; Ago1; ago1-1; Agp1; anon-WO0257455.29; argonaute1; CG6671; dAgo1; dAGO1; Dm Ago1; dmAgo1; DmAgo1; Dmel\CG6671; l(2)04845; l(2)4845; l(2)k00208; l(2)k08121; MRE20" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1354..1716 /gene="AGO1" /locus_tag="Dmel_CG6671" /gene_synonym="Ago; ago-1; Ago-1; AGO-1; ago1; Ago1; ago1-1; Agp1; anon-WO0257455.29; argonaute1; CG6671; dAgo1; dAGO1; Dm Ago1; dmAgo1; DmAgo1; Dmel\CG6671; l(2)04845; l(2)4845; l(2)k00208; l(2)k08121; MRE20" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1510..1512,1555..1557,1597..1599,1609..1611, 1663..1665,1684..1686,1690..1692) /gene="AGO1" /locus_tag="Dmel_CG6671" /gene_synonym="Ago; ago-1; Ago-1; AGO-1; ago1; Ago1; ago1-1; Agp1; anon-WO0257455.29; argonaute1; CG6671; dAgo1; dAGO1; Dm Ago1; dmAgo1; DmAgo1; Dmel\CG6671; l(2)04845; l(2)4845; l(2)k00208; l(2)k08121; MRE20" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1852..3174 /gene="AGO1" /locus_tag="Dmel_CG6671" /gene_synonym="Ago; ago-1; Ago-1; AGO-1; ago1; Ago1; ago1-1; Agp1; anon-WO0257455.29; argonaute1; CG6671; dAgo1; dAGO1; Dm Ago1; dmAgo1; DmAgo1; Dmel\CG6671; l(2)04845; l(2)4845; l(2)k00208; l(2)k08121; MRE20" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2305..2307,2317..2319,2353..2364,2371..2373, 2395..2397,2404..2406,2416..2418,2428..2430) /gene="AGO1" /locus_tag="Dmel_CG6671" /gene_synonym="Ago; ago-1; Ago-1; AGO-1; ago1; Ago1; ago1-1; Agp1; anon-WO0257455.29; argonaute1; CG6671; dAgo1; dAGO1; Dm Ago1; dmAgo1; DmAgo1; Dmel\CG6671; l(2)04845; l(2)4845; l(2)k00208; l(2)k08121; MRE20" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2509..2511,2515..2517,2728..2730,3142..3144) /gene="AGO1" /locus_tag="Dmel_CG6671" /gene_synonym="Ago; ago-1; Ago-1; AGO-1; ago1; Ago1; ago1-1; Agp1; anon-WO0257455.29; argonaute1; CG6671; dAgo1; dAGO1; Dm Ago1; dmAgo1; DmAgo1; Dmel\CG6671; l(2)04845; l(2)4845; l(2)k00208; l(2)k08121; MRE20" /note="active site" /db_xref="CDD:240015" ORIGIN
caaataagttgtgtttgtgcaaaactcgcgcgttcgcaattttccgaagctgactctcaattctcatacataacgatctcaagcgatctccgccaggcgaatcaaacccggatatatccagatctgcacgctggaaaagtaacgtccgcaacggtttaaatccagtcgagacgcaaaccccactcaactccttaatgagttcccctccattaaacggaattcaccaaaaaaaacgattgatttgccgctgataaagctgataaaagcgcacacacacaccaaagtcagctgcaattttgcgataaggagcagcgacgccgcctcaaactgacgccgacaccgactaaaatgtccacggagcgtgagctggctcccggtgggccagctcagctccatccgcacacgctgccgctgacttttccggatctccagatgacctccaccgtgggcatcattgggaaagtctacgagtcacagtggaccccctcgcccactcggcctcagagtccctctcaggcgcagactagcttcgacacgctcacatcaccaccagcgcccggctcgtcggtcaatcccaccgccgtcaccagcccaagtgcccagaatgtggccgctggtggagcaactgtggccggtgcagcagcaactgccgcccaggtggcctccgccttgggtgccaccaccggcagcgtgacgccagcaattgccaccgcaacgccagccacgcagccggatatgcccgtctttacgtgtccacgacgcccgaatctcggacgagagggtcgcccgattgtgctgcgcgccaatcacttccaggtgacaatgccgcgtggctatgtgcatcactatgacatcaatatacagccggacaagtgtccgcgaaaggtgaaccgtgagattatcgagactatggtgcatgcctatagcaagatcttcggagtgctcaagccggtgttcgatggtcgcaacaatctgtatacccgcgatcccctgcccattggcaacgagcgtctagagctggaggttactctacccggcgagggcaaagatcgaatctttcgcgtgacgatcaagtggcaggctcaggtctcgctcttcaatttggaggaagctctcgaaggccgcacgcggcagataccctatgatgccattttggcgctcgatgtggtcatgcgccatctgcccagcatgacgtacacgccagtgggacgtagcttcttcagttccccggagggttactaccatcccctgggtggtggacgcgaggtttggttcggtttccatcagagcgtaaggccctcgcagtggaagatgatgctcaatatcgatgtctcggccaccgctttctacaaggctcaaccagtcattgacttcatgtgcgaggtgctggacattcgcgacatcaacgagcagcgcaaaccgctcaccgattcgcagcgcgtcaagttcacgaaggagatcaagggtttgaagatcgagatcacccactgcggccagatgcgtcgcaagtatcgtgtgtgcaacgtcactcgccgccccgctcagatgcaatcattcccactgcagctggagaacggacagaccgtagagtgcaccgtggccaagtacttcctggacaagtaccgcatgaaattgcgctacccgcacttgccctgcctgcaggttggccaagagcacaagcacacttacctgcctctagaggtgtgcaacattgtggccggacagcggtgcattaaaaagctgaccgatatgcagacgtcgaccatgatcaaggccacagctcgttcagctccggatcgtgagcgtgagattaacaacttggtaaagcgcgccgacttcaacaacgattcgtatgtgcaagagtttggcctgaccatctccaattcgatgatggaggtacgaggacgcgtcttgcctcctcccaagcttcagtatgggggacgtgtgtctaccggcctcaccggccagcagctgttcccgccacagaacaaggtgagcttggcctcgcccaaccagggtgtatgggatatgcgaggcaagcagttcttcactggcgtcgagatccgcatctgggccatcgcctgttttgccccacagcgcacggtgcgcgaggatgcgctgcgtaatttcacccagcagctgcagaagatctcaaacgatgcaggcatgccgataattggacagccgtgcttctgtaagtacgccaccgggccggatcaagtggaacccatgttccgttacctgaagatcaccttccccggcctgcaactcgtcgtggttgtgctgcccggcaagactccagtatacgccgaggtgaagcgtgtaggtgacaccgttctgggtatggccacccagtgtgtgcaggccaagaacgtgaacaagacatcgccacagacgctctctaatctgtgtctgaagatcaacgtcaagttgggcggcatcaattcaattctggtcccctccattcggccaaaggtcttcaatgagccggtcatctttttgggtgccgatgtgacacacccaccagctggcgacaacaagaaaccatcgattgccgccgtcgtgggctccatggatgcccatccatcgcggtatgccgccaccgttcgcgtacagcagcaccgacaggagatcatccaggagctgagcagcatggtgcgcgagctgttgatcatgttctacaagtcgacgggcggctacaagccccaccgcatcatactctatcgtgacggagtctccgagggacaattcccacatgtcctgcaacacgaattgaccgccattcgcgaggcctgcattaagctagagccagagtatcggccgggcatcacattcattgtggtgcagaagcgccatcacactcgactcttctgcgcggagaagaaggagcagagcggcaaatcgggcaatattcccgcaggcaccaccgtcgatgtgggcatcacacatcccaccgaatttgatttctatctatgcagccatcagggcatccagggcaccagtcgcccctcgcactaccacgttctgtgggacgacaatcactttgactcggacgagctgcagtgcctcacgtatcagctatgccatacgtacgtgcgctgcacccgatccgtcagtataccggcgccagcctactacgcccatttagtggccttccgtgccagatatcatctggtggagaaggagcacgattcgggcgagggttcgcaccagagcggctgctcagaggatcgtacgccaggtgccatggccagggccatcactgtgcacgcggataccaagaaggtcatgtactttgcctaaaaagtatcgcccctccccaataccaacaccaaaaagctaaagaatacaaaatcagtttcgaatttcgattcgaataagcaactccccacttccttccctcaaatcagaaagcggaaagcggatgaaagccaagcatagaagtttagaattaagttacgttttacgttgagagagcgcggatgggtggaaaaaccaatcagaatacgaagatcttgcatgcattagttacgtacacgtacatatatagtaagcagagtaatgaaaatcccacaaacaccatccacacactcactcatccacacacacacaaatcagatagccacacagtgagaaatgataactaatcgaatgtcaggcacaagtttgcgaaatcaaagaaatgtgagaattctcaaaaacaagcgtagcaaacaaattgaaagcaaataggaaatcaactaaagggaacaaaaactacgacagcaacaccaaccaacaccagaaaaacaaaacaaattaaaacataaccaaaatggaagtgaaattacgtgaaaagcgagcgtcatcagcacgagagagagagacaagttttgtaatagaaattacgattaaattgtacaatatatttttacacgatacgaaatgaagacatgatgaatgataatgaatgaatgcatacaaccaaaggtttttagtatacaaaatgaatacgttgctgatcgactcacacagcaaacaccacatgaacaccaaccactcggattctctgtactgtgaacgaagaccaccaccaaaatataaacaaaaaccacaagcgacattaaagcgacaagcattgaaagagtgtgtagacacaacttagcatgtactaatgaattacttcaatacttcaactagggcgctgacaaaaccaagcaagaacatttaatagtttgtaagttgggctctaccaaaaaccgaacacaaaatgagagagagagagagagagaaaaatgcaagcaaggccagataagttaagtgggcaatgaataacgagaactgcaatttcaacaagggacaaacttttggtcaaaacaatagctatacttatagagcagagcctaatatatacatacataattagaatctaaaactaaaatttaaagtttttacgaaacgataaccaagcggatggagctgttgtaacaatgtagattacttaaattcaaaagtgcaaataacacggtagcagacacgttacgttggcagtgctgatattttatgttagtccttagtttaccctcttttatgcaccacaccaccacacaatcagactccgaacttcttcaaccctcctcgagtccaaggcatatcactcaatgtcctcttatttatgtacctcctacaataagccttatgatatatttagttgtaccttatatatatatatatatattttttaaaacgaatgcctaacgaaatttgttgatttcttcatgttgatgcttcgaattggcttcttcgctgcttttcgttgtaataatttcgtattaattaactttagatcaaagtggtgtacgggtaataataaacaaggtaactcttctccaccgtccgccggagggaggtggcaacaacatttcaatattttacaaagtagttttagtttcgccaaaatcaacaagcaaacaaacaatatcaatatcaatatgaaacgtatgcttagtaattgtactatatcgaggacacagttcaagttaacattataatgagttgttatttatgcggcgcgggcgacgacgttctatccactcggaatcgcccgggccaaacctaatttataattgtatacatccttcttcacagaacctttaatttagatttagtttccaagtttgcaagctgttttgccaatcgtacattatgtgagcattataaaatacataatatatataaatctatatgcttatatttaatcatttactgcacttacaaattagttggtaatcctcaagaatatatgtataaagaaaaaaagggaacagaacggaagaaaggaggtcgcacgcggtccctcaaaatgttgaatcgaacttatagaaatctctttggatttgaaatcatatacaaactggtggaacttcacgaatgatttcaaatcccttgatatttcagtggtggcaaaaaatttttaaatctgcattctcaatgcctgtttttaaacttctcgatgtttatcatttagtcaactacttcgagtgcaatgatatcttttgcagaaattttaaaaccagagttaatatttaaaagtcttcaaataaagttttttttttgtctaaattttgactagtccttccaacgaggctcaacatagctgatattaatagcttattaattaattaatattaattggtaatgcgtttaaatgcgattaacattttgtggggctgtgcaattaattgtgtgggcgtatttgtggacttattcattttccatttttttttctaataacgtttctacacaagggattaaaattttaaacttatgtcttaatttttacttaaagcaacccgatgcaaaaaaaaacaaacaaacaaaaaccaacaaaaaaacgaatcaaacaattttagttttaagaaaaaaaaaaacaagaaaacgaaaacgaaacaatgcaaaggagttcgcgattcggggctcgatttttgagatcggccagaaagaaccaacatttacattatatattcacttagtttaagctgaagctgaaatgtgtgccgacaatgaatgcatctcgtagttgtaaaatgagcgaaatattcaacaataatttactttaccacacaatacatgagaaagtccaaagctttaacttactcgcaagatgaatgaagcggaaatatcggtgggaaaacccttatcactaatgaaaatgccaataacaagctgctatctcctcccatccaagaaaaatgggctgtaacagttgtccctatatacacgcgtaaaacttatacatatatagtaaagctggataactccgattttcccaagaactcaagaaaactactcacacacgctacaatttcaatggtttcttcagtgtcgtgcagctaagtaaaaggaaaacaagttggaggagaagattgaagatcgtggatggccttagatatcatttccaaactatgttctgctcagaggcaaggcccaaataaaaagacaaaaagccgggatatccaaatgggaacttacatttttatctgtcaaaattcaattgagctttaaactaaagatagatcgagaaaaaacgaaaataaaaaaaaaacaaaaaaaaaatggaagtaaaaacttgaacaaaaaaaagaagagaagagtaagaaatacagaaaggaatcgcattgtttctacatattacttataaatgtgccgtttatagatgtctacaattatatacaacaaatatagatatatacctagatatataatcagatcgaaatcgaagctagaacagcaatttgcacaactcttcctaaaggaaataaaaagataaaaatacaaatctaaatctaactaacgattaaattacatatatgccacaattaccgagatttcaagaagtgacggactaactccaagcaattaaaacgttatatttgaaataacttatgaacttatgataccatatatgtatgtgtgtactctatactcttccaactagacccagagtcccactcgaacccggaccacatgcgcgatccacatagccattagcccacaaacactcaatccacacaatacacacaatccacactcgacttagtgttccaaatgcgcatcggatcagatcggataacgaaccccttagctgaaattcgactagcaaaatcaatacgttagtaacacttattcgtgcgttaagattagggagatcatctggtacataccttactttaaaaatcaaccaaaatgccgggtaattaatcaataaaatacatattattagttctaatctaagaggagtaaacaaaaacaaaacaaaaacaaaaggaaaacaaaaatacatcaacattatgaataaagaaaaataagcaacgtgagcaacgtaatatgggaaatctgtaactttggtgatctttttaaatgttattagtaaaagaaggcaaaacaaaatcaagtttaatgacgaatacaaatcaaaccagttttaaatgtgacttaaattacgacgtaaacgacatttttccacaacattatatgtgtaaacaagacgaaaaacaaaacaaaaaatgcaaaatgcgagtttgtgaaatatgcaatttaatgaaagttgatgatcttttcgatataattctgtcaagctgtcttaacaattagttataagcgcttcaatacaagaaaccatcaaacaaaaatcaacaaactcaattaagttatggaaaacacaattatatataacaacaaatcgtatatgttttatacaaattgtaattatttttatcgatttcgatttgattttttaaacccacgaaatgtacccatcccttgtaaaacaaaaacgattttagtttgcgtttaaaataagaaaacagcatatacaattcatttttgttcaataaaaatatatttaact
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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