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2017-11-23 18:24:35, GGRNA : RefSeq release 85 (Nov, 2017)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Homo sapiens Nanog homeobox (NANOG), transcript variant X2, mRNA. (1284 bp)
LOCUS XM_011520852 1284 bp mRNA linear PRI 06-JUN-2016 DEFINITION PREDICTED: Homo sapiens Nanog homeobox (NANOG), transcript variant X2, mRNA. ACCESSION XM_011520852 VERSION XM_011520852.1 DBLINK BioProject: PRJNA168 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000012.12) annotated...
XM_011520852.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens Nanog homeobox (NANOG), transcript variant X1, mRNA. (1356 bp)
LOCUS XM_011520850 1356 bp mRNA linear PRI 06-JUN-2016 DEFINITION PREDICTED: Homo sapiens Nanog homeobox (NANOG), transcript variant X1, mRNA. ACCESSION XM_011520850 VERSION XM_011520850.1 DBLINK BioProject: PRJNA168 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000012.12) annotated...
XM_011520850.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens Nanog homeobox pseudogene 8 (NANOGP8), mRNA. (1999 bp)
LOCUS NM_001355281 1999 bp mRNA linear PRI 14-SEP-2017 DEFINITION Homo sapiens Nanog homeobox pseudogene 8 (NANOGP8), mRNA. ACCESSION NM_001355281 VERSION NM_001355281.1 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC021231.8. Summary: This gene represents a transcribed retrogene of...
Synonym: NANOGP1; PN8
NM_001355281.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens NANOG neighbor homeobox (NANOGNB), mRNA. (907 bp)
LOCUS NM_001145465 907 bp mRNA linear PRI 02-OCT-2017 DEFINITION Homo sapiens NANOG neighbor homeobox (NANOGNB), mRNA. ACCESSION NM_001145465 XR_040558 XR_040559 XR_040560 VERSION NM_001145465.1 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AY151139.1. On or before Mar 1, 2009 this...
NM_001145465.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens Nanog homeobox (NANOG), transcript variant 2, mRNA. (2055 bp)
LOCUS NM_001297698 2055 bp mRNA linear PRI 03-OCT-2017 DEFINITION Homo sapiens Nanog homeobox (NANOG), transcript variant 2, mRNA. ACCESSION NM_001297698 XM_005253484 VERSION NM_001297698.1 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from DC425336.1, AY578089.1, AC006517.46 and AI656990.1. On Jul 10, 2014...
NM_001297698.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens Nanog homeobox (NANOG), transcript variant 1, mRNA. (2103 bp)
LOCUS NM_024865 2103 bp mRNA linear PRI 03-OCT-2017 DEFINITION Homo sapiens Nanog homeobox (NANOG), transcript variant 1, mRNA. ACCESSION NM_024865 VERSION NM_024865.3 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from DC425336.1, AK290896.1, AC006517.46 and AI656990.1. On Jul 10, 2014 this sequence version...
NM_024865.3 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens microRNA 612 (MIR612), microRNA. (100 bp)
synonym="hsa-mir-612; MIRN612" /replace="a" /replace="c" /db_xref="dbSNP:778486713" ORIGIN // REFERENCE 1 (bases 1 to 100) AUTHORS Liu Y, Liu DL, Dong LL, Wen D, Shi DM, Zhou J, Fan J and Wu WZ. TITLE miR-612 suppresses stem cell-like property of hepatocellular carcinoma cells by modulating Sp1/Nanog signaling JOURNAL Cell Death Dis 7 (9), E2377 (2016) PUBMED 27685621 REMARK GeneRIF: miR-612 has a suppressive role on hepatocellular carcinoma cell stemness via Sp1/Nanog signaling pathway. Publication Status: Online-Only REFERENCE 2 (bases 1 to 100) AUTHORS Sheng L, He P, Yang X, Zhou M and Feng...
Synonym: hsa-mir-612; MIRN612
NR_030343.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens microRNA 760 (MIR760), microRNA. (80 bp)
PHLPP2 expression, promoting proliferation. REFERENCE 3 (bases 1 to 80) AUTHORS Han ML, Wang F, Gu YT, Pei XH, Ge X, Guo GC, Li L, Duan X, Zhu MZ and Wang YM. TITLE MicroR-760 suppresses cancer stem cell subpopulation and breast cancer cell proliferation and metastasis: By down-regulating NANOG JOURNAL Biomed. Pharmacother. 80, 304-310 (2016) PUBMED 27133070 REMARK GeneRIF: miR-760 was proved to be functional associated with NANOG via regulating its expression. REFERENCE 4 (bases 1 to 80) AUTHORS Lv J, Fu Z, Shi M, Xia K, Ji C, Xu P, Lv M, Pan B, Dai L and Xie H. TITLE Systematic analysis of...
Synonym: hsa-mir-760; mir-760; MIRN760
NR_030621.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens microRNA 302a (MIR302A), microRNA. (69 bp)
Amyloid-beta-Induced Neurotoxicity through Activation of Akt Signaling JOURNAL J. Alzheimers Dis. 50 (4), 1083-1098 (2016) PUBMED 26890744 REMARK GeneRIF: Results demonstrated that miR-302 is able to inhibit Abeta-induced cytotoxicity via activating Akt signaling to upregulate Nrf2 and Nanog expressions, leading to a marked restoration of insulin signaling in Alzheimer's disease neurons REFERENCE 4 (bases 1 to 69) AUTHORS Gui S, Chen X, Zhang M, Zhao F, Wan Y, Wang L, Xu G, Zhou L, Yue X, Zhu Y and Liu S. TITLE Mir-302c mediates influenza A virus-induced IFNbeta expression by targeting NF-...
Synonym: hsa-mir-302; mir-302a; MIRN302; MIRN302A
NR_029835.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens developmental pluripotency associated 5 (DPPA5), mRNA. (660 bp)
variation complement(655) /gene="DPPA5" /gene_synonym="ESG1" /replace="a" /replace="g" /db_xref="dbSNP:76770796" ORIGIN // REFERENCE 1 (bases 1 to 660) AUTHORS Qian X, Kim JK, Tong W, Villa-Diaz LG and Krebsbach PH. TITLE DPPA5 Supports Pluripotency and Reprogramming by Regulating NANOG Turnover JOURNAL Stem Cells 34 (3), 588-600 (2016) PUBMED 26661329 REMARK GeneRIF: Our study provides new insight into the function of DPPA5 and NANOG regulation in human pluripotent stem cell . REFERENCE 2 (bases 1 to 660) AUTHORS Aoki T, Ohnishi H, Oda Y, Tadokoro M, Sasao M, Kato H, Hattori K and Ohgushi H....
Synonym: ESG1
NM_001025290.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens frizzled class receptor 9 (FZD9), mRNA. (2342 bp)
corresponded to that of a candidate tumorsuppressor gene in acute myeloid leukemia. REFERENCE 4 (bases 1 to 2342) AUTHORS Trubiani O, Zalzal SF, Paganelli R, Marchisio M, Giancola R, Pizzicannella J, Buhring HJ, Piattelli M, Caputi S and Nanci A. TITLE Expression profile of the embryonic markers nanog, OCT-4, SSEA-1, SSEA-4, and frizzled-9 receptor in human periodontal ligament mesenchymal stem cells JOURNAL J. Cell. Physiol. 225 (1), 123-131 (2010) PUBMED 20458727 REMARK GeneRIF: The presence of nanog, Oct-4, SSEA-1, and SSEA-4 suggests that periodontal ligament mesenchymal stem cells are...
Synonym: CD349; FZD3
NM_003508.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens growth differentiation factor 3 (GDF3), mRNA. (1267 bp)
African Americans JOURNAL Pharmacogenomics J. 14 (1), 35-40 (2014) PUBMED 23400010 REFERENCE 4 (bases 1 to 1267) AUTHORS Park SW, Lim HY, Do HJ, Sung B, Huh SH, Uhm SJ, Song H, Chung HJ, Kim JH, Kim NH and Kim JH. TITLE Regulation of human growth and differentiation factor 3 gene expression by NANOG in human embryonic carcinoma NCCIT cells JOURNAL FEBS Lett. 586 (19), 3529-3535 (2012) PUBMED 22963770 REMARK GeneRIF: first evidence that NANOG is a transcriptional activator of the expression of the oncogenic growth factor GDF3 in embryonic carcinoma cells REFERENCE 5 (bases 1 to 1267) AUTHORS Li...
Synonym: KFS3; MCOP7; MCOPCB6
NM_020634.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens ETS variant 4 (ETV4), transcript variant 5, mRNA. (1613 bp)
module more likely contributes more generally to the cancer phenotype. In keeping with this observation, depletion of ETV1 and/or ETV4 causes an OAC cell growth defect Publication Status: Online-Only REFERENCE 3 (bases 1 to 1613) AUTHORS Park SW, Do HJ, Choi W, Song H, Chung HJ and Kim JH. TITLE NANOG gene expression is regulated by the ETS transcription factor ETV4 in human embryonic carcinoma NCCIT cells JOURNAL Biochem. Biophys. Res. Commun. 487 (3), 532-538 (2017) PUBMED 28412366 REMARK GeneRIF: The data provide the molecular details of ETV4-mediated NANOG gene expression. REFERENCE 4...
Synonym: E1A-F; E1AF; PEA3; PEAS3
NM_001261439.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens tudor domain containing 12 (TDRD12), mRNA. (1617 bp)
TITLE New loci associated with kidney function and chronic kidney disease JOURNAL Nat. Genet. 42 (5), 376-384 (2010) PUBMED 20383146 REFERENCE 3 (bases 1 to 1617) AUTHORS Mitsui K, Tokuzawa Y, Itoh H, Segawa K, Murakami M, Takahashi K, Maruyama M, Maeda M and Yamanaka S. TITLE The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells JOURNAL Cell 113 (5), 631-642 (2003) PUBMED 12787504...
Synonym: ECAT8
NM_001110822.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens ubiquitin specific peptidase 21 (USP21), transcript variant 5, mRNA. (2175 bp)
and identifies p38-USP21 axis as an important pathway that DNA virus adopts to avoid innate immunity responses. REFERENCE 2 (bases 1 to 2175) AUTHORS Kwon SK, Lee DH, Kim SY, Park JH, Choi J and Baek KH. TITLE Ubiquitin-specific protease 21 regulating the K48-linked polyubiquitination of NANOG JOURNAL Biochem. Biophys. Res. Commun. 482 (4), 1443-1448 (2017) PUBMED 27956178 REMARK GeneRIF: USP21 specifically regulates the Lys48-linked polyubiquitination and stability of NANOG REFERENCE 3 (bases 1 to 2175) AUTHORS Heride C, Rigden DJ, Bertsoulaki E, Cucchi D, De Smaele E, Clague MJ and Urbe S....
Synonym: USP16; USP23
NM_001319848.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens ubiquitin specific peptidase 21 (USP21), transcript variant 1, mRNA. (2217 bp)
and identifies p38-USP21 axis as an important pathway that DNA virus adopts to avoid innate immunity responses. REFERENCE 2 (bases 1 to 2217) AUTHORS Kwon SK, Lee DH, Kim SY, Park JH, Choi J and Baek KH. TITLE Ubiquitin-specific protease 21 regulating the K48-linked polyubiquitination of NANOG JOURNAL Biochem. Biophys. Res. Commun. 482 (4), 1443-1448 (2017) PUBMED 27956178 REMARK GeneRIF: USP21 specifically regulates the Lys48-linked polyubiquitination and stability of NANOG REFERENCE 3 (bases 1 to 2217) AUTHORS Heride C, Rigden DJ, Bertsoulaki E, Cucchi D, De Smaele E, Clague MJ and Urbe S....
Synonym: USP16; USP23
NM_012475.4 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens ubiquitin specific peptidase 21 (USP21), transcript variant 3, mRNA. (2358 bp)
and identifies p38-USP21 axis as an important pathway that DNA virus adopts to avoid innate immunity responses. REFERENCE 2 (bases 1 to 2358) AUTHORS Kwon SK, Lee DH, Kim SY, Park JH, Choi J and Baek KH. TITLE Ubiquitin-specific protease 21 regulating the K48-linked polyubiquitination of NANOG JOURNAL Biochem. Biophys. Res. Commun. 482 (4), 1443-1448 (2017) PUBMED 27956178 REMARK GeneRIF: USP21 specifically regulates the Lys48-linked polyubiquitination and stability of NANOG REFERENCE 3 (bases 1 to 2358) AUTHORS Heride C, Rigden DJ, Bertsoulaki E, Cucchi D, De Smaele E, Clague MJ and Urbe S....
Synonym: USP16; USP23
NM_001014443.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens ubiquitin specific peptidase 21 (USP21), transcript variant 4, mRNA. (2305 bp)
and identifies p38-USP21 axis as an important pathway that DNA virus adopts to avoid innate immunity responses. REFERENCE 2 (bases 1 to 2305) AUTHORS Kwon SK, Lee DH, Kim SY, Park JH, Choi J and Baek KH. TITLE Ubiquitin-specific protease 21 regulating the K48-linked polyubiquitination of NANOG JOURNAL Biochem. Biophys. Res. Commun. 482 (4), 1443-1448 (2017) PUBMED 27956178 REMARK GeneRIF: USP21 specifically regulates the Lys48-linked polyubiquitination and stability of NANOG REFERENCE 3 (bases 1 to 2305) AUTHORS Heride C, Rigden DJ, Bertsoulaki E, Cucchi D, De Smaele E, Clague MJ and Urbe S....
Synonym: USP16; USP23
NM_001319847.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens acrosin binding protein (ACRBP), mRNA. (1886 bp)
of cell cycle-regulated protein cyclin E, migration/invasion-regulated proteins MMP2 and MMP9. Publication Status: Online-Only REFERENCE 2 (bases 1 to 1886) AUTHORS Hu Q, Fu J, Luo B, Huang M, Guo W, Lin Y, Xie X and Xiao S. TITLE OY-TES-1 may regulate the malignant behavior of liver cancer via NANOG, CD9, CCND2 and CDCA3: a bioinformatic analysis combine with RNAi and oligonucleotide microarray JOURNAL Oncol. Rep. 33 (4), 1965-1975 (2015) PUBMED 25673160 REMARK GeneRIF: OY-TES-1 downregulation in liver cancer cells caused 2 opposite effects on cell proliferation: promotion by upregulating...
Synonym: CT23; OY-TES-1; SP32
NM_032489.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens developmental pluripotency associated 3 (DPPA3), mRNA. (1079 bp)
In mice, knockout experiments show this gene may be a maternal factor in cleavage stage embryogenesis. Publication Status: Online-Only REFERENCE 7 (bases 1 to 1079) AUTHORS Clark AT, Rodriguez RT, Bodnar MS, Abeyta MJ, Cedars MI, Turek PJ, Firpo MT and Reijo Pera RA. TITLE Human STELLAR, NANOG, and GDF3 genes are expressed in pluripotent cells and map to chromosome 12p13, a hotspot for teratocarcinoma JOURNAL Stem Cells 22 (2), 169-179 (2004) PUBMED 14990856 REFERENCE 8 (bases 1 to 1079) AUTHORS Payer B, Saitou M, Barton SC, Thresher R, Dixon JP, Zahn D, Colledge WH, Carlton MB, Nakano T and...
Synonym: Pgc7; STELLA
NM_199286.3 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens ETS variant 4 (ETV4), transcript variant 4, mRNA. (2187 bp)
module more likely contributes more generally to the cancer phenotype. In keeping with this observation, depletion of ETV1 and/or ETV4 causes an OAC cell growth defect Publication Status: Online-Only REFERENCE 3 (bases 1 to 2187) AUTHORS Park SW, Do HJ, Choi W, Song H, Chung HJ and Kim JH. TITLE NANOG gene expression is regulated by the ETS transcription factor ETV4 in human embryonic carcinoma NCCIT cells JOURNAL Biochem. Biophys. Res. Commun. 487 (3), 532-538 (2017) PUBMED 28412366 REMARK GeneRIF: The data provide the molecular details of ETV4-mediated NANOG gene expression. REFERENCE 4...
Synonym: E1A-F; E1AF; PEA3; PEAS3
NM_001261438.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens ETS variant 4 (ETV4), transcript variant 3, mRNA. (2358 bp)
module more likely contributes more generally to the cancer phenotype. In keeping with this observation, depletion of ETV1 and/or ETV4 causes an OAC cell growth defect Publication Status: Online-Only REFERENCE 3 (bases 1 to 2358) AUTHORS Park SW, Do HJ, Choi W, Song H, Chung HJ and Kim JH. TITLE NANOG gene expression is regulated by the ETS transcription factor ETV4 in human embryonic carcinoma NCCIT cells JOURNAL Biochem. Biophys. Res. Commun. 487 (3), 532-538 (2017) PUBMED 28412366 REMARK GeneRIF: The data provide the molecular details of ETV4-mediated NANOG gene expression. REFERENCE 4...
Synonym: E1A-F; E1AF; PEA3; PEAS3
NM_001261437.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens ETS variant 4 (ETV4), transcript variant 1, mRNA. (2298 bp)
module more likely contributes more generally to the cancer phenotype. In keeping with this observation, depletion of ETV1 and/or ETV4 causes an OAC cell growth defect Publication Status: Online-Only REFERENCE 3 (bases 1 to 2298) AUTHORS Park SW, Do HJ, Choi W, Song H, Chung HJ and Kim JH. TITLE NANOG gene expression is regulated by the ETS transcription factor ETV4 in human embryonic carcinoma NCCIT cells JOURNAL Biochem. Biophys. Res. Commun. 487 (3), 532-538 (2017) PUBMED 28412366 REMARK GeneRIF: The data provide the molecular details of ETV4-mediated NANOG gene expression. REFERENCE 4...
Synonym: E1A-F; E1AF; PEA3; PEAS3
NM_001986.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens cell division cycle associated 3 (CDCA3), transcript variant 2, mRNA. (1733 bp)
variation 1714 /gene="CDCA3" /gene_synonym="GRCC8; TOME-1" /replace="a" /replace="t" /db_xref="dbSNP:3180416" ORIGIN // REFERENCE 1 (bases 1 to 1733) AUTHORS Hu Q, Fu J, Luo B, Huang M, Guo W, Lin Y, Xie X and Xiao S. TITLE OY-TES-1 may regulate the malignant behavior of liver cancer via NANOG, CD9, CCND2 and CDCA3: a bioinformatic analysis combine with RNAi and oligonucleotide microarray JOURNAL Oncol. Rep. 33 (4), 1965-1975 (2015) PUBMED 25673160 REMARK GeneRIF: OY-TES-1 downregulation in liver cancer cells promotes cell proliferation by upregulating CCND2 and CDCA3. REFERENCE 2...
Synonym: GRCC8; TOME-1
NM_001297602.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens cell division cycle associated 3 (CDCA3), transcript variant 6, mRNA. (1524 bp)
variation 1505 /gene="CDCA3" /gene_synonym="GRCC8; TOME-1" /replace="a" /replace="t" /db_xref="dbSNP:3180416" ORIGIN // REFERENCE 1 (bases 1 to 1524) AUTHORS Hu Q, Fu J, Luo B, Huang M, Guo W, Lin Y, Xie X and Xiao S. TITLE OY-TES-1 may regulate the malignant behavior of liver cancer via NANOG, CD9, CCND2 and CDCA3: a bioinformatic analysis combine with RNAi and oligonucleotide microarray JOURNAL Oncol. Rep. 33 (4), 1965-1975 (2015) PUBMED 25673160 REMARK GeneRIF: OY-TES-1 downregulation in liver cancer cells promotes cell proliferation by upregulating CCND2 and CDCA3. REFERENCE 2...
Synonym: GRCC8; TOME-1
NM_001331019.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens ETS variant 4 (ETV4), transcript variant 2, mRNA. (2469 bp)
module more likely contributes more generally to the cancer phenotype. In keeping with this observation, depletion of ETV1 and/or ETV4 causes an OAC cell growth defect Publication Status: Online-Only REFERENCE 3 (bases 1 to 2469) AUTHORS Park SW, Do HJ, Choi W, Song H, Chung HJ and Kim JH. TITLE NANOG gene expression is regulated by the ETS transcription factor ETV4 in human embryonic carcinoma NCCIT cells JOURNAL Biochem. Biophys. Res. Commun. 487 (3), 532-538 (2017) PUBMED 28412366 REMARK GeneRIF: The data provide the molecular details of ETV4-mediated NANOG gene expression. REFERENCE 4...
Synonym: E1A-F; E1AF; PEA3; PEAS3
NM_001079675.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens KH domain containing 3 like, subcortical maternal complex member (KHDC3L), mRNA. (1027 bp)
family JOURNAL Genomics 90 (5), 583-594 (2007) PUBMED 17913455 REMARK GeneRIF: This paper states that ECAT1 is not found in rodents. REFERENCE 10 (bases 1 to 1027) AUTHORS Mitsui K, Tokuzawa Y, Itoh H, Segawa K, Murakami M, Takahashi K, Maruyama M, Maeda M and Yamanaka S. TITLE The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells JOURNAL Cell 113 (5), 631-642 (2003) PUBMED 12787504...
Synonym: C6orf221; ECAT1; HYDM2
NM_001017361.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens paired related homeobox 1 (PRRX1), transcript variant pmx-1b, mRNA. (3999 bp)
AGOTC; PHOX1; PMX1; PRX-1; PRX1" /replace="c" /replace="t" /db_xref="dbSNP:1038431279" ORIGIN // REFERENCE 1 (bases 1 to 3999) AUTHORS Wang B, Chen Q, Cao Y, Ma X, Yin C, Jia Y, Zang A and Fan W. TITLE LGR5 Is a Gastric Cancer Stem Cell Marker Associated with Stemness and the EMT Signature Genes NANOG, NANOGP8, PRRX1, TWIST1, and BMI1 JOURNAL PLoS ONE 11 (12), E0168904 (2016) PUBMED 28033430 REMARK GeneRIF: LGR5-expressing fraction of CD54+ cells represents gastric cancer CSCs, in which LGR5 is closely associated with stemness and EMT core genes Publication Status: Online-Only REFERENCE 2...
Synonym: AGOTC; PHOX1; PMX1; PRX-1; PRX1
NM_022716.3 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens cell division cycle associated 3 (CDCA3), transcript variant 3, mRNA. (1489 bp)
complement(1488) /gene="CDCA3" /gene_synonym="GRCC8; TOME-1" /replace="a" /replace="g" /db_xref="dbSNP:782182483" ORIGIN // REFERENCE 1 (bases 1 to 1489) AUTHORS Hu Q, Fu J, Luo B, Huang M, Guo W, Lin Y, Xie X and Xiao S. TITLE OY-TES-1 may regulate the malignant behavior of liver cancer via NANOG, CD9, CCND2 and CDCA3: a bioinformatic analysis combine with RNAi and oligonucleotide microarray JOURNAL Oncol. Rep. 33 (4), 1965-1975 (2015) PUBMED 25673160 REMARK GeneRIF: OY-TES-1 downregulation in liver cancer cells promotes cell proliferation by upregulating CCND2 and CDCA3. REFERENCE 2...
Synonym: GRCC8; TOME-1
NM_001297603.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens paired related homeobox 1 (PRRX1), transcript variant pmx-1a, mRNA. (4071 bp)
AGOTC; PHOX1; PMX1; PRX-1; PRX1" /replace="c" /replace="t" /db_xref="dbSNP:1038431279" ORIGIN // REFERENCE 1 (bases 1 to 4071) AUTHORS Wang B, Chen Q, Cao Y, Ma X, Yin C, Jia Y, Zang A and Fan W. TITLE LGR5 Is a Gastric Cancer Stem Cell Marker Associated with Stemness and the EMT Signature Genes NANOG, NANOGP8, PRRX1, TWIST1, and BMI1 JOURNAL PLoS ONE 11 (12), E0168904 (2016) PUBMED 28033430 REMARK GeneRIF: LGR5-expressing fraction of CD54+ cells represents gastric cancer CSCs, in which LGR5 is closely associated with stemness and EMT core genes Publication Status: Online-Only REFERENCE 2...
Synonym: AGOTC; PHOX1; PMX1; PRX-1; PRX1
NM_006902.4 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens cell division cycle associated 3 (CDCA3), transcript variant 1, mRNA. (1808 bp)
variation 1789 /gene="CDCA3" /gene_synonym="GRCC8; TOME-1" /replace="a" /replace="t" /db_xref="dbSNP:3180416" ORIGIN // REFERENCE 1 (bases 1 to 1808) AUTHORS Hu Q, Fu J, Luo B, Huang M, Guo W, Lin Y, Xie X and Xiao S. TITLE OY-TES-1 may regulate the malignant behavior of liver cancer via NANOG, CD9, CCND2 and CDCA3: a bioinformatic analysis combine with RNAi and oligonucleotide microarray JOURNAL Oncol. Rep. 33 (4), 1965-1975 (2015) PUBMED 25673160 REMARK GeneRIF: OY-TES-1 downregulation in liver cancer cells promotes cell proliferation by upregulating CCND2 and CDCA3. REFERENCE 2...
Synonym: GRCC8; TOME-1
NM_031299.6 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens long intergenic non-protein coding RNA, regulator of reprogramming (LINC-ROR), long non-coding RNA. (2591 bp)
a lincRNA as a MicroRNA sponge in embryonic stem cell self-renewal JOURNAL Dev. Cell 25 (1), 1-2 (2013) PUBMED 23597480 REFERENCE 7 (bases 1 to 2591) AUTHORS Wang Y, Xu Z, Jiang J, Xu C, Kang J, Xiao L, Wu M, Xiong J, Guo X and Liu H. TITLE Endogenous miRNA sponge lincRNA-RoR regulates Oct4, Nanog, and Sox2 in human embryonic stem cell self-renewal JOURNAL Dev. Cell 25 (1), 69-80 (2013) PUBMED 23541921 REMARK GeneRIF: Linc-RoR expression is positively correlated with the undifferentiated embryonic stem cell state. REFERENCE 8 (bases 1 to 2591) AUTHORS Zhang A, Zhou N, Huang J, Liu Q, Fukuda K...
Synonym: lincRNA-RoR; ROR
NR_048536.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens cell division cycle associated 3 (CDCA3), transcript variant 7, non-coding RNA. (1615 bp)
variation 1596 /gene="CDCA3" /gene_synonym="GRCC8; TOME-1" /replace="a" /replace="t" /db_xref="dbSNP:3180416" ORIGIN // REFERENCE 1 (bases 1 to 1615) AUTHORS Hu Q, Fu J, Luo B, Huang M, Guo W, Lin Y, Xie X and Xiao S. TITLE OY-TES-1 may regulate the malignant behavior of liver cancer via NANOG, CD9, CCND2 and CDCA3: a bioinformatic analysis combine with RNAi and oligonucleotide microarray JOURNAL Oncol. Rep. 33 (4), 1965-1975 (2015) PUBMED 25673160 REMARK GeneRIF: OY-TES-1 downregulation in liver cancer cells promotes cell proliferation by upregulating CCND2 and CDCA3. REFERENCE 2...
Synonym: GRCC8; TOME-1
NR_138531.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens cell division cycle associated 3 (CDCA3), transcript variant 4, mRNA. (1701 bp)
variation 1682 /gene="CDCA3" /gene_synonym="GRCC8; TOME-1" /replace="a" /replace="t" /db_xref="dbSNP:3180416" ORIGIN // REFERENCE 1 (bases 1 to 1701) AUTHORS Hu Q, Fu J, Luo B, Huang M, Guo W, Lin Y, Xie X and Xiao S. TITLE OY-TES-1 may regulate the malignant behavior of liver cancer via NANOG, CD9, CCND2 and CDCA3: a bioinformatic analysis combine with RNAi and oligonucleotide microarray JOURNAL Oncol. Rep. 33 (4), 1965-1975 (2015) PUBMED 25673160 REMARK GeneRIF: OY-TES-1 downregulation in liver cancer cells promotes cell proliferation by upregulating CCND2 and CDCA3. REFERENCE 2...
Synonym: GRCC8; TOME-1
NM_001297604.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens LINE1 type transposase domain containing 1 (L1TD1), transcript variant 2, mRNA. (3894 bp)
PUBMED 25702638 REMARK GeneRIF: we show that L1TD1 is a part of the pluripotency interactome network of OCT4, SOX2, and NANOG, bridging nuclear and cytoplasmic regulation and highlighting the importance of RNA biology in pluripotency. REFERENCE 4 (bases 1 to 3894) AUTHORS McLaughlin RN Jr, Young JM...undifferentiated human embryonic stem cells JOURNAL PLoS ONE 6 (4), E19355 (2011) PUBMED 21559406 REMARK GeneRIF: L1TD1 is a downstream target of Nanog and represents a useful marker for identifying undifferentiated hESC Publication Status: Online-Only REFERENCE 10 (bases 1 to 3894) AUTHORS Yamamoto...
Synonym: ECAT11
NM_019079.4 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens LINE1 type transposase domain containing 1 (L1TD1), transcript variant 1, mRNA. (4005 bp)
PUBMED 25702638 REMARK GeneRIF: we show that L1TD1 is a part of the pluripotency interactome network of OCT4, SOX2, and NANOG, bridging nuclear and cytoplasmic regulation and highlighting the importance of RNA biology in pluripotency. REFERENCE 4 (bases 1 to 4005) AUTHORS McLaughlin RN Jr, Young JM...undifferentiated human embryonic stem cells JOURNAL PLoS ONE 6 (4), E19355 (2011) PUBMED 21559406 REMARK GeneRIF: L1TD1 is a downstream target of Nanog and represents a useful marker for identifying undifferentiated hESC Publication Status: Online-Only REFERENCE 10 (bases 1 to 4005) AUTHORS Yamamoto...
Synonym: ECAT11
NM_001164835.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens cell division cycle associated 3 (CDCA3), transcript variant 5, non-coding RNA. (1792 bp)
variation 1773 /gene="CDCA3" /gene_synonym="GRCC8; TOME-1" /replace="a" /replace="t" /db_xref="dbSNP:3180416" ORIGIN // REFERENCE 1 (bases 1 to 1792) AUTHORS Hu Q, Fu J, Luo B, Huang M, Guo W, Lin Y, Xie X and Xiao S. TITLE OY-TES-1 may regulate the malignant behavior of liver cancer via NANOG, CD9, CCND2 and CDCA3: a bioinformatic analysis combine with RNAi and oligonucleotide microarray JOURNAL Oncol. Rep. 33 (4), 1965-1975 (2015) PUBMED 25673160 REMARK GeneRIF: OY-TES-1 downregulation in liver cancer cells promotes cell proliferation by upregulating CCND2 and CDCA3. REFERENCE 2...
Synonym: GRCC8; TOME-1
NR_123727.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens heart and neural crest derivatives expressed 1 (HAND1), mRNA. (1749 bp)
overexpression inhibits medulloblastoma metastasis JOURNAL Biochem. Biophys. Res. Commun. 477 (2), 215-221 (2016) PUBMED 27297109 REMARK GeneRIF: Strikingly, human pluripotent stem cell antibody array showed that Hand1 overexpression resulted in substantial decrease in pluripotency markers (Nanog, Oct3/4, Otx2, Flk1) suggesting that Hand1 expression may be essential to attenuate the EMT and our findings underscore a novel role for Hand1 in medulloblastoma metastasis. REFERENCE 4 (bases 1 to 1749) AUTHORS Zhou,Y.M., Dai,X.Y., Qiu,X.B., Yuan,F., Li,R.G., Xu,Y.J., Qu,X.K., Huang,R.T., Xue,S. and...
Synonym: bHLHa27; eHand; Hxt; Thing1
NM_004821.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens POU class 5 homeobox 1B (POU5F1B), mRNA. (1599 bp)
transcriptional activator and regulates the expression in a similar way to the POU5F1 isoform 1 REFERENCE 6 (bases 1 to 1599) AUTHORS Firsova,N.V., Markintantova,Iu.V., Smirnova,Iu.A., Panova,I.G., Sukhikh,G.T., Zinov'eva,R.D. and Mitashov,V.I. TITLE [Identification of the OCT4-pg1 retrogene and NANOG gene expression in the human embryonic eye] JOURNAL Izv. Akad. Nauk. Ser. Biol. 2, 134-138 (2008) PUBMED 18946985 REFERENCE 7 (bases 1 to 1599) AUTHORS Suo G, Han J, Wang X, Zhang J, Zhao Y, Zhao Y and Dai J. TITLE Oct4 pseudogenes are transcribed in cancers JOURNAL Biochem. Biophys. Res. Commun...
Synonym: OCT4-PG1; OCT4PG1; OTF3C; OTF3P1; POU5F1P1; POU5F1P4; POU5FLC20; POU5FLC8
NM_001159542.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens estrogen related receptor beta (ESRRB), mRNA. (3029 bp)
misc_feature 648..1004 /gene="ESRRB" /gene_synonym="DFNB35; ERR2; ERRb; ESRL2; NR3B2" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (O95718.3); Region: Interaction with NANOG. {ECO:0000250|UniProtKB:Q61539}" misc_feature 663..950 /gene="ESRRB" /gene_synonym="DFNB35; ERR2; ERRb; ESRL2; NR3B2" /note="DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers; Region: NR_DBD_ERR; cd07170" /db_xref="CDD:143544" misc_feature order...
Synonym: DFNB35; ERR2; ERRb; ESRL2; NR3B2
NM_004452.3 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens alkB homolog 5, RNA demethylase (ALKBH5), mRNA. (3449 bp)
like cells and predicts poor survival in glioblastoma patients. REFERENCE 2 (bases 1 to 3449) AUTHORS Zhang C, Samanta D, Lu H, Bullen JW, Zhang H, Chen I, He X and Semenza GL. TITLE Hypoxia induces the breast cancer stem cell phenotype by HIF-dependent and ALKBH5-mediated m(6)A-demethylation of NANOG mRNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 113 (14), E2047-E2056 (2016) PUBMED 27001847 REMARK GeneRIF: HIF-dependent ALKBH5 expression mediates enrichment of BCSCs in the hypoxic tumor microenvironment REFERENCE 3 (bases 1 to 3449) AUTHORS Du T, Rao S, Wu L, Ye N, Liu Z, Hu H, Xiu J, Shen Y and...
Synonym: ABH5; OFOXD; OFOXD1
NM_017758.3 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens Y-box binding protein 1 (YBX1), transcript variant 2, non-coding RNA. (2978 bp)
PUBMED 28782557 REMARK GeneRIF: YB-1 expression promotes pancreatic cancer metastasis that is inhibited by microRNA-216a. REFERENCE 2 (bases 1 to 2978) AUTHORS Guo T, Kong J, Liu Y, Li Z, Xia J, Zhang Y, Zhao S, Li F, Li J and Gu C. TITLE Transcriptional activation of NANOG by YBX1 promotes lung cancer stem-like properties and metastasis JOURNAL Biochem. Biophys. Res. Commun. 487 (1), 153-159 (2017) PUBMED 28400280 REMARK GeneRIF: Collectively, these findings demonstrate a novel role of YBX1 in maintaining the stemness of CSCs and metastasis, unveiling YBX1 as promising therapeutic target for...
Synonym: BP-8; CBF-A; CSDA2; CSDB; DBPB; EFI-A; MDR-NF1; NSEP-1; NSEP1; YB-1; YB1
NR_132737.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens Y-box binding protein 1 (YBX1), transcript variant 1, mRNA. (3160 bp)
PUBMED 28782557 REMARK GeneRIF: YB-1 expression promotes pancreatic cancer metastasis that is inhibited by microRNA-216a. REFERENCE 2 (bases 1 to 3160) AUTHORS Guo T, Kong J, Liu Y, Li Z, Xia J, Zhang Y, Zhao S, Li F, Li J and Gu C. TITLE Transcriptional activation of NANOG by YBX1 promotes lung cancer stem-like properties and metastasis JOURNAL Biochem. Biophys. Res. Commun. 487 (1), 153-159 (2017) PUBMED 28400280 REMARK GeneRIF: Collectively, these findings demonstrate a novel role of YBX1 in maintaining the stemness of CSCs and metastasis, unveiling YBX1 as promising therapeutic target for...
Synonym: BP-8; CBF-A; CSDA2; CSDB; DBPB; EFI-A; MDR-NF1; NSEP-1; NSEP1; YB-1; YB1
NM_004559.4 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)

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Redirect URI : http://ggrna.dbcls.jp/hs/nanog
lang : en | div : | spe : hs | query_string : nanog | format : html | download :

0.000 | 0.000 | search_start;
0.070 | 0.070 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:nanog)%7C(nt:nanog)%7C(aa:nanog))?source=Homo sapiens (human)?to=0&format=json
0.293 | 0.223 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:nanog)%7C(nt:nanog)%7C(aa:nanog))?source=Homo sapiens (human)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.298 | 0.004 | cgi_end;

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]