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2024-05-06 03:23:50, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Danio rerio odorant receptor, family D, subfamily 111, member 1 (or111-1), transcript variant X1, mRNA. (1931 bp)
acgtgatttaagtgaccaatcattgccatagtatgttgacatattttatacaaccttaaacacatcattcactgtgatttacttgtatttttggttgataaaatcaacttaaaagtgtgattaaaataaatattatttcaaaatgtttttctttttttccataagctaatgttataatgagcatgttggtctccacatttcccattcttctctgtatagtatacataacatgaaagcataatacacacaaatgtaagtttccatttattgtgtctgtttttaaaggtcatcaaaggtcataatgacctctttgatactgaaaggtaataacacacatcaatgtaaagtctcagcctcataatggtcttttactgccctctactggtatcttcaagtaggtgcataatgtttgagtctatgtatcttaacccagacagtgtcatataattattatttcttcaaaatgtctttaaatttggaaaccaatgtttatcctgaaatatgcttgttggtgtaactttaatatgtttaactctaaaattttgtaagaatataactgttgtaaaaataaaagtcttctaatcttta
position 1637
Synonym: olfr2.6; or2.6; orzf1i; ZF1I; ZF1l; zgc:194674; zgc:194699
XM_005157696.2 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio E3 ubiquitin-protein ligase TRIM39-like (LOC100149991), mRNA. (4073 bp)
gagcggatgtcagcgctggagcaggagatctctgagctggagagcagaaacactgagctggagcagctctcacacactgaagatcatctacacctcatacagattcactcttcactcagcagcttcagaaacaccaggagcaggtctgagatcagctggaagactcacgagactctaaagagagctctgattaaactgaaggagtccatagatgagaaactcgagcaaactgcctctgaagagctgaagtggatgcagcagtatgcagtggatgtgactctggatcctgataaaggtcatagtgacctcaaactttctgatgatggaaaacaagtacgatttagagacattttgccgaattattcatccaaaccacagagatttgacagaaatttatttgttttgggaagggagggattctcctcggggagattttattttgaggtgctggtgaaggaaaagacggactggactttaggagtggccagagaatccactgacaggaataaagagattacagtgagtccccgaactggatgctggactgtggctctgattaatggaaatgattatcgtgcctgcaatgatcctccagtctct...
position 1287
XM_003200506.5 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio follistatin-like 3 (secreted glycoprotein) (fstl3), mRNA. (1442 bp)
agcagggaagagtgctgtgctgctggccgtctggacactgcctggtccaatgctagtctgcccatcaatgaagtcagcctgctgggattcctgggaatagtttcctgtaagccgtgtaaagagaactgtgaaggagtgaactgtggccttggaaaggtgtgtagaatgaagtcaggacgcccacagtgcgtttgctctccagactgttccaacatctccactaaacacgcagtgtgtgggagcgatgggaattcctacaaagacgagtgcgcgctcctgatggctcgctgcaaaggtcatcctgacctggagataatgtaccagggggaatgcaaaaagtcctgctcaaatgtggtatgtcctggtactcatacctgtgtgacggaccagactaacagtgcccactgtgtcatgtgccgcactgcaccttgtccgatgcccatgatcaccgagcaaaccatctgcggcaatgataacatcacttaccaaagtgcttgccacctgcgtagggcaacctgctttttgggtcgatccataggagttcgccactatggacactgcagaagtaatgaagcaagtgaggaaaattcactcttctga...
position 534
Synonym: si:dkey-28h18.3; zgc:114170
NM_001030111.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio peter pan homolog (ppan), mRNA. (1873 bp)
Isolation and expression patterns of genes for three angiopoietin-like proteins, Angptl1, 2 and 6 in zebrafish JOURNAL Gene Expr Patterns 5 (5), 679-685 (2005) PUBMED 15939380 acatggctacacaggattttcaagatggacgtagtttaaaaaggcttgtgagatattttagctgagattttcgaattaaaaacagttttagctttccaccatcgacagggaaaggtcatactgaccttacaatatggggaaaaataagactaagaaccagaagaaagcccgtggagatgcgacacgtgtggcggaggagagttactcaactgtcccgcacacattcgtgtttcaccgcggacaggtcggcaagaatgtcggacagctgatgctggacatgagacgggtcatggagcctttcactgccagatctctaaaggtacggaagaaaaacgtcttgaaagattttgttgctgtggccggaccgttaggaatcacacacttctcaatatttaccaaaacagaaaatactgtaaacatgagg...
position 113
Synonym: cb642
NM_201463.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio zgc:161973 (zgc:161973), mRNA. (1822 bp)
actgtacaccagcagagtggggttgcaaggagagtatgtgcagctaaacgctgttgatttctctgattcttccgaacacatgcctgtggtgaggatctgtctaccatggcaagcagagggactgaagggaaatgttgagcgttgctgtatgatgactctgacagtcctggatgaggctcagcgccccttctggtgtgtgagttcacctgtgaggatgtccagtaatccgagagtggtggacgtggagtacgaaggtgagcagttcatcatcctttatgaggacgcggaggggaaggtcaaaatgacctttgtgtggatggaggagttccagcacttcttcttggtgcagttgtttactgtgttctcagtagccaaagtgaaaaagcacttttgggggtgaatgactttgattgtgctttgagctcgaagatcatttagaatatttttattttcctattttatttattttttgctctttgttgatggagatatctgaaatgttttgttgtggagtttcaagggcattaacgtttccaaatgaagaaaaaaaaacagcaaatctcaaagcacttaatttttcatcaatttaaaattggtaaa...
position 1384
NM_001082806.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio iroquois homeobox 6a (irx6a), mRNA. (2175 bp)
acatggctttatgagcaccgcaaaaacccttatcctacaaagggtgaaaagatcatgctggccattatcaccaaaatgaccctcacgcaagtgtctacctggtttgccaatgctagaagacgactaaaaaaagaaaacaagatgacttggtcccccaaaaacaaagcaggcgatgacaggaaggaagacctcgactccaaagacagtaaggatgagcaggacctgcagttcagtgacctggatgatatggaggatgaggactgtgacaagctggacagtgactgtgaaaaatcaggtcaggatgacctcccgacctcctcccctccaaagagagactgtaaccctgacatccctctccactccaacttcccatcttttccctgtggtctgaagagtttggggcctctgaacccagactacctagatcatctgggctccaaaccacagcagcaacagccctcacctcagtccacctccataaacactgtggcactctctcactttgagtcatcggagaagccccggatctggtcgttggcacgtacggccgcagcaggggttgtactaggcacacagcatgttggggatgtacggactggg...
position 931
Synonym: zgc:109993; ziro6a
NM_001023575.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio shisa family member 8b (shisa8b), mRNA. (1924 bp)
caatgggaccccccttttaactgtaatgctggtatcttcttgtactgttgcggcacctgtttctaccggttctgctgccagttccgtcaacagcgactggatcagacctcctgctccaactatgatactccaatttgggcaaatactggaaaacctgtggccaccaacactgaggtgcagccagaccacgagcgggatcgaactcatatgattgtatacattatctgtggtgtggtggccatcatggtcctggtgggcatcttcaccaaactgggtctggagaagagccgtggaggtcagaatgacctaagtaactccaggactctccaggagttaatgaagcagccaggtggagaggcgaatgctgtggatggacctctgagcaacagctcctctattggagcaaatggcatctctgccaggatgcttcgcagccgcagtgagcagtaccatctaaacaacgctggcttttcttttggtgcactggctggactctctcatcctcaaagcaacctcagcataccaggccttgcactcaacaaatacaactctctgaaagcagttgctgacactgcaaaccggagctactacaagagttat...
position 812
XM_021472515.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio shisa family member 8b (shisa8b), mRNA. (1938 bp)
caatgggaccccccttttaattgtaacgctggtatcttcttgtactgttgcggcacctgtttctaccggttctgctgccagttccgtcaacagcgactggatcagacctcctgctccaactatgatactccaatttgggcaaatactggaaaacctgtggccaccaacactgaggtgcagccagaccacgagcgggatcgaactcatatgattgtatacattatctgtggtgtggtggccatcatggtcctggtgggcatcttcaccaaactgggtctggagaagagccgtggaggtcagaatgacctaagtaactccaggactctccaggagttaatgaagcagccaggtggagaggcgaatgctgtggatggacctctgagcaacagctcctctattggagcaaatggcatctctgccaggatgcttcgcagccgcagtgagcagtaccatctaaacaacgctggcttttcttttggtgcaccggctggactctctcatcctcaaagcaacctcagcataccaggccttgcactcaacaaatacaactctctgaaagcagttgctgacactgcaaaccggagctactacaagagttat...
position 802
XM_005156170.4 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio shisa family member 8b (shisa8b), mRNA. (1948 bp)
caatgggaccccccttttaactgtaatgctggtatcttcttgtactgttgcggcacctgtttctaccggttctgctgccagttccgtcaacagcgactggatcagacctcctgctccaactatgatactccaatttgggcaaatactggaaaacctgtggccaccaacactgaggtgcagccagaccacgagcgggatcgaactcatatgattgtatacattatctgtggtgtggtggccatcatggtcctggtgggcatcttcaccaaactgggtctggagaagagccgtggaggtcagaatgacctaagtaactccaggactctccaggagttaatgaagcagccaggtggagaggcgaatgctgtggatggacctctgagcaacagctcctctattggagcaaatggcatctctgccaggatgcttcgcagccgcagtgagcagtaccatctaaacaacgctggcttttcttttggtgcaccggctggactctctcatcctcaaagcaacctcagcataccaggccttgcactcaacaaatacaactctctgaaagcagttgctgacactgcaaaccggagctactacaagagttat...
position 812
XM_021480293.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio iroquois homeobox 6a (irx6a), transcript variant X2, mRNA. (2507 bp)
acatggctttatgagcaccgcaaaaacccttatcctacaaagggtgaaaagatcatgctggccattatcaccaaaatgaccctcacgcaagtgtctacctggtttgccaatgctagaagacgactaaaaaaagaaaacaagatgacttggtcccccaaaaacaaagcaggcgatgacaggaaggaagacctcgactccaaagacagtaaggatgagcaggacctgcagttcagtgacctggatgatatggaggatgaggactgtgacaagctggacagtgactgtgaaaaatcaggtcaggatgacctcccgacctcctcccctccaaagagagactgtaaccctgacatccctctccactccaacttcccatcttttccctgtggtctgaagagtttggggcctctgaacccagactacctagatcatctgggctccaaaccacagcagcaacagccctcacctcagtccacctccataaacactgtggcactctctcactttgagtcatcggagaagccccggatctggtcgttggcacgtacggccgcagcaggggttgtactaggcacacagcatgttggggatgtacggactggg...
position 1336
Synonym: zgc:109993; ziro6a
XM_021477513.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio iroquois homeobox 6a (irx6a), transcript variant X1, mRNA. (2531 bp)
ccttatcctacaaagggtgaaaagatcatgctggccattatcaccaaaatgaccctcacgcaagtgtctacctggtttgccaatgctagaagacgactaaaaaaagaaaacaagatgacttggtcccccaaaaacaaagcaggcgatgacaggaaggaagacctcggtaagagtgacccagacattaccaaagactccaaagacagtaaggatgagcaggacctgcagttcagtgacctggatgatatggaggatgaggactgtgacaagctggacagtgactgtgaaaaatcaggtcaggatgacctcccgacctcctcccctccaaagagagactgtaaccctgacatccctctccactccaacttcccatcttttccctgtggtctgaagagtttggggcctctgaacccagactacctagatcatctgggctccaaaccacagcagcaacagccctcacctcagtccacctccataaacactgtggcactctctcactttgagtcatcggagaagccccggatctggtcgttggcacgtacggccgcagcaggggttgtactaggcacacagcatgttggggatgtacggactggg...
position 1360
Synonym: zgc:109993; ziro6a
XM_005168976.4 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio iroquois homeobox 6a (irx6a), transcript variant X3, mRNA. (2539 bp)
ccttatcctacaaagggtgaaaagatcatgctggccattatcaccaaaatgaccctcacgcaagtgtctacctggtttgccaatgctagaagacgactaaaaaaagaaaacaagatgacttggtcccccaaaaacaaagcaggcgatgacaggaaggaagacctcggtaagagtgacccagacattaccaaagactccaaagacagtaaggatgagcaggacctgcagttcagtgacctggatgatatggaggatgaggactgtgacaagctggacagtgactgtgaaaaatcaggtcaggatgacctcccgacctcctcccctccaaagagagactgtaaccctgacatccctctccactccaacttcccatcttttccctgtggtctgaagagtttggggcctctgaacccagactacctagatcatctgggctccaaaccacagcagcaacagccctcacctcagtccacctccataaacactgtggcactctctcactttgagtcatcggagaagccccggatctggtcgttggcacgtacggccgcagcaggggttgtactaggcacacagcatgttggggatgtacggactggg...
position 1359
Synonym: zgc:109993; ziro6a
XM_009303318.3 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio mitogen-activated protein kinase 8b (mapk8b), transcript variant X2, mRNA. (3160 bp)
gcggatctctgtagacgaggcgcttcagcacccctacatcaacgtttggtacgacccatcagaagtggaggcgccgccaccagcgatcacggataaacagctcgatgagagagaacactcagtggaagagtggaaagagctcatatacaaggaagtgctggaatgggaggagcgaacaaaaaatggagtgatcagaggacagccggcctcgctaggtgcagcagtgagcagtgactcccatgagccctcgacgtcgtcctcctccataaacgatgtgtcgtccatgtccaccgaggtcacgctgacctcagacaccgacagcagtcaggagacgtccaacggagcgctgcactgctgcagatgaccatccttcttcaacctccgtcaccctctgaaatccttcatcaccttccattgtcttctgtcatgattcttcatcctccaaaatgcttcatcaccttccaaaatcatctattgttctctgtcatggttcttcatcctccaaaatcctcccattggccttttaaaatcctccatcctcccctgtcaccttccaaaatcctctagccccctcaaatatgctctgttaccctctaaaat...
position 1440
Synonym: JNK; JNK1; jnk1a-1; mapk8; zgc:112379
XM_017358486.2 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio mitogen-activated protein kinase 8b (mapk8b), transcript variant X1, mRNA. (3160 bp)
gcggatctctgtagacgaggcgcttcagcacccctacatcaacgtttggtacgacccatcagaagtggaggcgccgccaccagcgatcacggataaacagctcgatgagagagaacactcagtggaagagtggaaagagctcatatacaaggaagtgctggaatgggaggagcgaacaaaaaatggagtgatcagaggacagccggcctcgctaggtgcagcagtgagcagtgactcccatgagccctcgacgtcgtcctcctccataaacgatgtgtcgtccatgtccaccgaggtcacgctgacctcagacaccgacagcagtcaggagacgtccaacggagcgctgcactgctgcagatgaccatccttcttcaacctccgtcaccctctgaaatccttcatcaccttccattgtcttctgtcatgattcttcatcctccaaaatgcttcatcaccttccaaaatcatctattgttctctgtcatggttcttcatcctccaaaatcctcccattggccttttaaaatcctccatcctcccctgtcaccttccaaaatcctctagccccctcaaatatgctctgttaccctctaaaat...
position 1440
Synonym: JNK; JNK1; jnk1a-1; mapk8; zgc:112379
XM_017358485.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio nucleoporin 205 (nup205), mRNA. (6108 bp)
gcaggatgacgtttctttgcaaactcttctcacgcctcagccgccgctgcttaaaccgttgtacatctacgagtccaaaatggctctgctgacccgcgtggccaagaccgctcagggtgcgatggagctgctgcgctgtggtctggtcgctcagctggtggagtgtcaggtgtttcacatgctccctcagaatgacgcgctcagagtgtttgggcagagagatccttcagggtttattcctagtcctctggagcgatacaggcagatcctgcttcctacactcagactgatgcaggtcatcttgacctccaccaccgcacagcaccagcagggggcagcacaggtgctccagtggcttatcgttcattcggatgtcattcagtctattctgcatggtcaggacatgagcatgggctctttacaggaactgtctctgctcactgccatcatcagcaagacggcactgccaggagcacttgagatgggacaggaaatcaacagcgctgccctcatggagttacagggacacatcggcagattccagcggcagtcgttgtctctgctggtgcgtctggtgggcactgatcgcgctcgctacct...
position 4838
Synonym: zgc:111802
NM_001313687.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio nucleoporin 205 (nup205), transcript variant X1, mRNA. (6250 bp)
gcaggatgacgtttctttgcaaactcttctcacgcctcagccgccgctgcttaaaccgttgtacatctacgagtccaaaatggctctgctgacccgcgtggccaagaccgctcagggtgcgatggagctgctgcgctgtggtctggtcgctcagctggtggagtgtcaggtgtttcacatgctccctcagaatgacgcgctcagagtgtttgggcagagagatccttcagggtttattcctagtcctctggagcgatacaggcagatcctgcttcctacactcagactgatgcaggtcatcttgacctccaccaccgcacagcaccagcagggggcagcacaggtgctccagtggcttatcgttcattcggatgtcattcagtctattctgcatggtcaggacatgagcatgggctctttacaggaactgtctctgctcactgccatcatcagcaagacggcactgccaggagcacttgagatgggacaggaaatcaacagcgctgccctcatggagttacagggacacatcggcagattccagcggcagtcgttgtctctgctggtgcgtctggtgggcactgatcgcgctcgctacct...
position 4899
Synonym: zgc:111802
XM_021467634.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio cell adhesion molecule L1-like b (chl1b), transcript variant X9, mRNA. (6429 bp)
tcacaaggacaaaatacatggacatctgggtggctacagggtgagctggtggaggcttcgtagtctgctggactcaaagaaaacacacggcgacaagcacacattgacattctcaggcgagaggaaccatgcggtggtcacaggtcttaagccgttctccgaatacagcctcattgtcatggcctttaacagcagaggaaacggtcctggcagtcattcggtcaacttcaaaacccctgagggagttcctggtcaagcagctgctttcagtgctacaaacatccagaagcacaaggtcaccttgacctggtctcctccagttgacgcaaatggagtcctaattggctacatcctccaatatcagctaataaacaacacagaggaactaggccctctgatgacactcaacatctccgccgacagcaataagcagcacctcgaaaacctggaagccctgagcaaatacaaattttaccttcggtgttgcacgcgggtgggctgcggtcctgcggtcagcgaggagcgcaccaccgtccctgaagccagtctggccagcattcatggaagcatctcaaaccagggatggttcatcggactcat...
position 3202
XM_017356694.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio mitogen-activated protein kinase 8b (mapk8b), mRNA. (7896 bp)
tctctgtagacgaggcgcttcagcacccctacatcaacgtttggtacgacccatcagaagtggaggcgccgccaccagcgatcacggataaacagctcgatgagagagaacactcagtggaagagtggaaagagctcatatacaaggaagtgctggaatgggaggagcgaacaaaaaatggagtgatcagaggacagccggcctcgctagcacaggtgcagcagtgagcagtgactcccatgagccctcgacgtcgtcctcctccataaacgatgtgtcgtccatgtccaccgaggtcacgctgacctcagacaccgacagcagtcaggagacgtccaacggagcgctgcactgctgcagatgaccatccttcttcaacctccgtcaccctctgaaatccttcatcaccttccattgtcttctgtcatgattcttcatcctccaaaatgcttcatcaccttccaaaatcatctattgttctctgtcatggttcttcatcctccaaaatcctcccattggccttttaaaatcctccatcctcccctgtcaccttccaaaatcctctagccccctcaaatatgctctgttaccctctaaaat...
position 1398
Synonym: JNK; JNK1; jnk1a-1; jnk1b; mapk8; zgc:112379
NM_131721.2 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio cell adhesion molecule L1-like b (chl1b), transcript variant X8, mRNA. (6534 bp)
tcacaaggacaaaatacatggacatctgggtggctacagggtgagctggtggaggcttcgtagtctgctggactcaaagaaaacacacggcgacaagcacacattgacattctcaggcgagaggaaccatgcggtggtcacaggtcttaagccgttctccgaatacagcctcattgtcatggcctttaacagcagaggaaacggtcctggcagtcattcggtcaacttcaaaacccctgagggagttcctggtcaagcagctgctttcagtgctacaaacatccagaagcacaaggtcaccttgacctggtctcctccagttgacgcaaatggagtcctaattggctacatcctccaatatcagctaataaacaacacagaggaactaggccctctgatgacactcaacatctccgccgacagcaataagcagcacctcgaaaacctggaagccctgagcaaatacaaattttaccttcggtgttgcacgcgggtgggctgcggtcctgcggtcagcgaggagcgcaccaccgtccctgaagccacttcaacagatgtggcctctttcaacatcagaaaatccagctcacgatttcctcc...
position 3202
XM_017356693.2 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio cell adhesion molecule L1-like b (chl1b), transcript variant X6, mRNA. (6700 bp)
tcacaaggacaaaatacatggacatctgggtggctacagggtgagctggtggaggcttcgtagtctgctggactcaaagaaaacacacggcgacaagcacacattgacattctcaggcgagaggaaccatgcggtggtcacaggtcttaagccgttctccgaatacagcctcattgtcatggcctttaacagcagaggaaacggtcctggcagtcattcggtcaacttcaaaacccctgagggagttcctggtcaagcagctgctttcagtgctacaaacatccagaagcacaaggtcaccttgacctggtctcctccagttgacgcaaatggagtcctaattggctacatcctccaatatcagctaataaacaacacagaggaactaggccctctgatgacactcaacatctccgccgacagcaataagcagcacctcgaaaacctggaagccctgagcaaatacaaattttaccttcggtgttgcacgcgggtgggctgcggtcctgcggtcagcgaggagcgcaccaccgtccctgaagccacggtgttgaatattagcacctcagttagtcacaactatgcaaatatcagctggat...
position 3203
XM_017356691.2 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio cell adhesion molecule L1-like b (chl1b), transcript variant X5, mRNA. (6742 bp)
tcacaaggacaaaatacatggacatctgggtggctacagggtgagctggtggaggcttcgtagtctgctggactcaaagaaaacacacggcgacaagcacacattgacattctcaggcgagaggaaccatgcggtggtcacaggtcttaagccgttctccgaatacagcctcattgtcatggcctttaacagcagaggaaacggtcctggcagtcattcggtcaacttcaaaacccctgagggagttcctggtcaagcagctgctttcagtgctacaaacatccagaagcacaaggtcaccttgacctggtctcctccagttgacgcaaatggagtcctaattggctacatcctccaatatcagctaataaacaacacagaggaactaggccctctgatgacactcaacatctccgccgacagcaataagcagcacctcgaaaacctggaagccctgagcaaatacaaattttaccttcggtgttgcacgcgggtgggctgcggtcctgcggtcagcgaggagcgcaccaccgtccctgaagccacttcaacagatgtggcctctttcaacatcagaaaatccagctcacgatttcctcc...
position 3140
XM_017356690.2 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio cell adhesion molecule L1-like b (chl1b), transcript variant X2, mRNA. (6756 bp)
tcacaaggacaaaatacatggacatctgggtggctacagggtgagctggtggaggcttcgtagtctgctggactcaaagaaaacacacggcgacaagcacacattgacattctcaggcgagaggaaccatgcggtggtcacaggtcttaagccgttctccgaatacagcctcattgtcatggcctttaacagcagaggaaacggtcctggcagtcattcggtcaacttcaaaacccctgagggagttcctggtcaagcagctgctttcagtgctacaaacatccagaagcacaaggtcaccttgacctggtctcctccagttgacgcaaatggagtcctaattggctacatcctccaatatcagctaataaacaacacagaggaactaggccctctgatgacactcaacatctccgccgacagcaataagcagcacctcgaaaacctggaagccctgagcaaatacaaattttaccttcggtgttgcacgcgggtgggctgcggtcctgcggtcagcgaggagcgcaccaccgtccctgaagccacttcaacagatgtggcctctttcaacatcagaaaatccagctcacgatttcctcc...
position 3154
XM_017356687.2 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio cell adhesion molecule L1-like b (chl1b), transcript variant X4, mRNA. (6760 bp)
tcacaaggacaaaatacatggacatctgggtggctacagggtgagctggtggaggcttcgtagtctgctggactcaaagaaaacacacggcgacaagcacacattgacattctcaggcgagaggaaccatgcggtggtcacaggtcttaagccgttctccgaatacagcctcattgtcatggcctttaacagcagaggaaacggtcctggcagtcattcggtcaacttcaaaacccctgagggagttcctggtcaagcagctgctttcagtgctacaaacatccagaagcacaaggtcaccttgacctggtctcctccagttgacgcaaatggagtcctaattggctacatcctccaatatcagctaataaacaacacagaggaactaggccctctgatgacactcaacatctccgccgacagcaataagcagcacctcgaaaacctggaagccctgagcaaatacaaattttaccttcggtgttgcacgcgggtgggctgcggtcctgcggtcagcgaggagcgcaccaccgtccctgaagccacttcaacagatgtggcctctttcaacatcagaaaatccagctcacgatttcctcc...
position 3158
XM_017356689.2 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio cell adhesion molecule L1-like b (chl1b), transcript variant X3, mRNA. (6787 bp)
tcacaaggacaaaatacatggacatctgggtggctacagggtgagctggtggaggcttcgtagtctgctggactcaaagaaaacacacggcgacaagcacacattgacattctcaggcgagaggaaccatgcggtggtcacaggtcttaagccgttctccgaatacagcctcattgtcatggcctttaacagcagaggaaacggtcctggcagtcattcggtcaacttcaaaacccctgagggagttcctggtcaagcagctgctttcagtgctacaaacatccagaagcacaaggtcaccttgacctggtctcctccagttgacgcaaatggagtcctaattggctacatcctccaatatcagctaataaacaacacagaggaactaggccctctgatgacactcaacatctccgccgacagcaataagcagcacctcgaaaacctggaagccctgagcaaatacaaattttaccttcggtgttgcacgcgggtgggctgcggtcctgcggtcagcgaggagcgcaccaccgtccctgaagccacttcaacagatgtggcctctttcaacatcagaaaatccagctcacgatttcctcc...
position 3185
XM_017356688.2 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio cell adhesion molecule L1-like b (chl1b), transcript variant X1, mRNA. (6805 bp)
tcacaaggacaaaatacatggacatctgggtggctacagggtgagctggtggaggcttcgtagtctgctggactcaaagaaaacacacggcgacaagcacacattgacattctcaggcgagaggaaccatgcggtggtcacaggtcttaagccgttctccgaatacagcctcattgtcatggcctttaacagcagaggaaacggtcctggcagtcattcggtcaacttcaaaacccctgagggagttcctggtcaagcagctgctttcagtgctacaaacatccagaagcacaaggtcaccttgacctggtctcctccagttgacgcaaatggagtcctaattggctacatcctccaatatcagctaataaacaacacagaggaactaggccctctgatgacactcaacatctccgccgacagcaataagcagcacctcgaaaacctggaagccctgagcaaatacaaattttaccttcggtgttgcacgcgggtgggctgcggtcctgcggtcagcgaggagcgcaccaccgtccctgaagccacttcaacagatgtggcctctttcaacatcagaaaatccagctcacgatttcctcc...
position 3203
XM_017356686.2 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio cell adhesion molecule L1-like b (chl1b), transcript variant X7, mRNA. (6863 bp)
tcacaaggacaaaatacatggacatctgggtggctacagggtgagctggtggaggcttcgtagtctgctggactcaaagaaaacacacggcgacaagcacacattgacattctcaggcgagaggaaccatgcggtggtcacaggtcttaagccgttctccgaatacagcctcattgtcatggcctttaacagcagaggaaacggtcctggcagtcattcggtcaacttcaaaacccctgagggagttcctggtcaagcagctgctttcagtgctacaaacatccagaagcacaaggtcaccttgacctggtctcctccagttgacgcaaatggagtcctaattggctacatcctccaatatcagctaataaacaacacagaggaactaggccctctgatgacactcaacatctccgccgacagcaataagcagcacctcgaaaacctggaagccctgagcaaatacaaattttaccttcggtgttgcacgcgggtgggctgcggtcctgcggtcagcgaggagcgcaccaccgtccctgaagccacttcaacagatgtggcctctttcaacatcagaaaatccagctcacgatttcctcc...
position 3204
XM_017356692.2 - Danio rerio (zebrafish) - NCBI - UCSC

Data Export:

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Debug Info:

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0.000 | 0.000 | search_start;
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0.646 | 0.503 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((nt:aggtcaaaatgacct)%7C(nt:aggtcaatatgacct)%7C(nt:aggtcaagatgacct)%7C(nt:aggtcaacatgacct)%7C(nt:aggtcataatgacct)%7C(nt:aggtcattatgacct)%7C(nt:aggtcatgatgacct)%7C(nt:aggtcatcatgacct)%7C(nt:aggtcagaatgacct)%7C(nt:aggtcagtatgacct)%7C(nt:aggtcaggatgacct)%7C(nt:aggtcagcatgacct)%7C(nt:aggtcacaatgacct)%7C(nt:aggtcactatgacct)%7C(nt:aggtcacgatgacct)%7C(nt:aggtcaccatgacct)%7C(nt:aggtcaaagtgacct)%7C(nt:aggtcaatgtgacct)%7C(nt:aggtcaaggtgacct)%7C(nt:aggtcaacgtgacct)%7C(nt:aggtcatagtgacct)%7C(nt:aggtcattgtgacct)%7C(nt:aggtcatggtgacct)%7C(nt:aggtcatcgtgacct)%7C(nt:aggtcagagtgacct)%7C(nt:aggtcagtgtgacct)%7C(nt:aggtcagggtgacct)%7C(nt:aggtcagcgtgacct)%7C(nt:aggtcacagtgacct)%7C(nt:aggtcactgtgacct)%7C(nt:aggtcacggtgacct)%7C(nt:aggtcaccgtgacct)%7C(nt:aggtcataatgacct)%7C(nt:aggtcatattgacct)%7C(nt:aggtcatagtgacct)%7C(nt:aggtcatactgacct)%7C(nt:aggtcattatgacct)%7C(nt:aggtcattttgacct)%7C(nt:aggtcattgtgacct)%7C(nt:aggtcattctgacct)%7C(nt:aggtcatgatgacct)%7C(nt:aggtcatgttgacct)%7C(nt:aggtcatggtgacct)%7C(nt:aggtcatgctgacct)%7C(nt:aggtcatcatgacct)%7C(nt:aggtcatcttgacct)%7C(nt:aggtcatcgtgacct)%7C(nt:aggtcatcctgacct)%7C(nt:aggtcacaatgacct)%7C(nt:aggtcacattgacct)%7C(nt:aggtcacagtgacct)%7C(nt:aggtcacactgacct)%7C(nt:aggtcactatgacct)%7C(nt:aggtcactttgacct)%7C(nt:aggtcactgtgacct)%7C(nt:aggtcactctgacct)%7C(nt:aggtcacgatgacct)%7C(nt:aggtcacgttgacct)%7C(nt:aggtcacggtgacct)%7C(nt:aggtcacgctgacct)%7C(nt:aggtcaccatgacct)%7C(nt:aggtcaccttgacct)%7C(nt:aggtcaccgtgacct)%7C(nt:aggtcaccctgacct))?source=Danio rerio (zebrafish)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.684 | 0.037 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]