2024-05-19 11:06:28, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001030111 1442 bp mRNA linear VRT 17-OCT-2021 DEFINITION Danio rerio follistatin-like 3 (secreted glycoprotein) (fstl3), mRNA. ACCESSION NM_001030111 VERSION NM_001030111.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 1442) AUTHORS Gu L, Tian L, Gao G, Peng S, Zhang J, Wu D, Huang J, Hua Q, Lu T, Zhong L, Fu Z, Pan X, Qian H and Sun L. TITLE Inhibitory effects of polystyrene microplastics on caudal fin regeneration in zebrafish larvae JOURNAL Environ Pollut 266 (Pt 3), 114664 (2020) PUBMED 32768670 REFERENCE 2 (bases 1 to 1442) AUTHORS Giffen KP, Liu H, Kramer KL and He DZ. TITLE Expression of Protein-Coding Gene Orthologs in Zebrafish and Mouse Inner Ear Non-sensory Supporting Cells JOURNAL Front Neurosci 13, 1117 (2019) PUBMED 31680844 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1442) AUTHORS Saunders LM, Mishra AK, Aman AJ, Lewis VM, Toomey MB, Packer JS, Qiu X, McFaline-Figueroa JL, Corbo JC, Trapnell C and Parichy DM. TITLE Thyroid hormone regulates distinct paths to maturation in pigment cell lineages JOURNAL Elife 8, e45181 (2019) PUBMED 31140974 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 1442) AUTHORS Wagner DE, Weinreb C, Collins ZM, Briggs JA, Megason SG and Klein AM. TITLE Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo JOURNAL Science 360 (6392), 981-987 (2018) PUBMED 29700229 REFERENCE 5 (bases 1 to 1442) AUTHORS Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and Bobe J. TITLE Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database JOURNAL BMC Genomics 17, 368 (2016) PUBMED 27189481 REMARK Publication Status: Online-Only REFERENCE 6 (bases 1 to 1442) AUTHORS Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and Hertzano R. TITLE RFX transcription factors are essential for hearing in mice JOURNAL Nat Commun 6, 8549 (2015) PUBMED 26469318 REMARK Publication Status: Online-Only COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC134879.1. On Apr 1, 2007 this sequence version replaced NM_001030111.1. ##Evidence-Data-START## Transcript exon combination :: BC134879.1, BC097220.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1442 /organism="Danio rerio" /mol_type="mRNA" /db_xref="taxon:7955" /chromosome="22" /map="22" gene 1..1442 /gene="fstl3" /gene_synonym="si:dkey-28h18.3; zgc:114170" /note="follistatin-like 3 (secreted glycoprotein)" /db_xref="GeneID:557352" /db_xref="ZFIN:ZDB-GENE-050913-111" exon 1..175 /gene="fstl3" /gene_synonym="si:dkey-28h18.3; zgc:114170" /inference="alignment:Splign:2.1.0" CDS 100..840 /gene="fstl3" /gene_synonym="si:dkey-28h18.3; zgc:114170" /codon_start=1 /product="follistatin-related protein 3 precursor" /protein_id="NP_001025282.2" /db_xref="GeneID:557352" /db_xref="ZFIN:ZDB-GENE-050913-111" /translation="
MNVLAVLHCVILISVCEILGEHRTSAGMCWLQQGPEHRCDMVLMRGVSREECCAAGRLDTAWSNASLPINEVSLLGFLGIVSCKPCKENCEGVNCGLGKVCRMKSGRPQCVCSPDCSNISTKHAVCGSDGNSYKDECALLMARCKGHPDLEIMYQGECKKSCSNVVCPGTHTCVTDQTNSAHCVMCRTAPCPMPMITEQTICGNDNITYQSACHLRRATCFLGRSIGVRHYGHCRSNEASEENSLF"
sig_peptide 100..159 /gene="fstl3" /gene_synonym="si:dkey-28h18.3; zgc:114170" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 430..573 /gene="fstl3" /gene_synonym="si:dkey-28h18.3; zgc:114170" /note="Kazal type serine protease inhibitors; Region: KAZAL; smart00280" /db_xref="CDD:197624" misc_feature 700..801 /gene="fstl3" /gene_synonym="si:dkey-28h18.3; zgc:114170" /note="Kazal type serine protease inhibitors and follistatin-like domains. Kazal inhibitors inhibit serine proteases, such as, trypsin, chyomotrypsin, avian ovomucoids, and elastases. The inhibitory domain has one reactive site peptide bond, which serves the...; Region: KAZAL_FS; cd00104" /db_xref="CDD:238052" exon 176..361 /gene="fstl3" /gene_synonym="si:dkey-28h18.3; zgc:114170" /inference="alignment:Splign:2.1.0" exon 362..577 /gene="fstl3" /gene_synonym="si:dkey-28h18.3; zgc:114170" /inference="alignment:Splign:2.1.0" exon 578..805 /gene="fstl3" /gene_synonym="si:dkey-28h18.3; zgc:114170" /inference="alignment:Splign:2.1.0" exon 806..1417 /gene="fstl3" /gene_synonym="si:dkey-28h18.3; zgc:114170" /inference="alignment:Splign:2.1.0" ORIGIN
ccacgtcccagtctgcagacttcttatcagtacaagtacttcagaggaaagccgctggttccttcaaacatctgtgttaaagaagctttcggcagcatcatgaacgttttggctgtcctgcactgtgtgatacttatttcagtttgtgaaatacttggagaacatcgaacgagcgctggcatgtgctggttgcagcagggtccggagcaccgctgtgacatggtgctcatgaggggtgtgagcagggaagagtgctgtgctgctggccgtctggacactgcctggtccaatgctagtctgcccatcaatgaagtcagcctgctgggattcctgggaatagtttcctgtaagccgtgtaaagagaactgtgaaggagtgaactgtggccttggaaaggtgtgtagaatgaagtcaggacgcccacagtgcgtttgctctccagactgttccaacatctccactaaacacgcagtgtgtgggagcgatgggaattcctacaaagacgagtgcgcgctcctgatggctcgctgcaaaggtcatcctgacctggagataatgtaccagggggaatgcaaaaagtcctgctcaaatgtggtatgtcctggtactcatacctgtgtgacggaccagactaacagtgcccactgtgtcatgtgccgcactgcaccttgtccgatgcccatgatcaccgagcaaaccatctgcggcaatgataacatcacttaccaaagtgcttgccacctgcgtagggcaacctgctttttgggtcgatccataggagttcgccactatggacactgcagaagtaatgaagcaagtgaggaaaattcactcttctgaggatgtcaagacagatcctctccttgtatatattatgatggcacataagacgtgagagaacctgtttgaaaccatatcacaacacggtcctctgtaccaaagaaccactagtattttataggcatgcaattcaatacttaaaggaaacgtgtggtttttaacaggagaattgaactgatgaattgacagtgtgcatattgtaaatatactacaagctactatttattggagaaaagttaggaagtcggtgttatttatgtgttaacacgtttgagacaccatatattcgtacatcagctgcctttctctatgtatttattgtgggttttgcttcagttttcatgtatttgtcagaactgaataatgtaaacgtgcacgacagggtttccgtacctttgaatcctcataattactgaacagaaatgactaaaacattttttttgttttcacaaagagctatttcttgccaaataaatgtttttttacattacattttatggtatttatattatttttgtactaaatgtattatattattttatgtttttatttaaatgataataaataataattcacaaaaaaaaaaaaaaaaaaaaaaaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]